Wall clock time and date at job start Tue Mar 31 2020 19:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46925 * 2 1 4 4 N 1.46501 * 109.47221 * 119.99732 * 2 1 3 5 5 N 1.40081 * 126.03517 * 294.35699 * 4 2 1 6 6 C 1.30842 * 108.20057 * 180.23437 * 5 4 2 7 7 C 1.39864 * 108.20509 * 359.78141 * 6 5 4 8 8 C 1.34946 * 126.03688 * 114.20283 * 4 2 1 9 9 C 1.50698 * 126.12515 * 0.03841 * 8 4 2 10 10 H 1.09002 * 110.42234 * 332.16046 * 9 8 4 11 11 O 1.44430 * 110.37338 * 209.84854 * 9 8 4 12 12 C 1.44418 * 105.27665 * 200.65681 * 11 9 8 13 13 C 1.54791 * 104.85930 * 40.46164 * 12 11 9 14 14 C 1.54480 * 110.37670 * 94.46930 * 9 8 4 15 15 H 1.08998 * 110.51189 * 261.59364 * 14 9 8 16 16 C 1.50703 * 110.50765 * 24.16097 * 14 9 8 17 17 O 1.21282 * 119.99858 * 83.69861 * 16 14 9 18 18 N 1.34776 * 120.00096 * 263.69276 * 16 14 9 19 19 C 1.46499 * 119.99808 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47012 * 180.02562 * 19 18 16 21 21 C 1.53002 * 109.47279 * 180.02562 * 20 19 18 22 22 C 1.50696 * 109.47415 * 179.97438 * 21 20 19 23 23 H 1.08004 * 119.99432 * 359.72894 * 22 21 20 24 24 C 1.37878 * 120.00236 * 180.02562 * 22 21 20 25 25 N 1.31507 * 120.00105 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99919 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47011 * 89.99711 * 26 24 22 28 28 H 1.48494 * 109.47392 * 209.99970 * 26 24 22 29 29 H 1.48503 * 109.47211 * 330.00509 * 26 24 22 30 30 H 1.08999 * 109.46482 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46952 * 299.99713 * 1 2 3 32 32 H 1.08999 * 109.47145 * 60.00335 * 1 2 3 33 33 H 1.08998 * 109.47434 * 240.00425 * 2 1 3 34 34 H 1.08995 * 109.47193 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46936 * 299.99794 * 3 2 1 36 36 H 1.09001 * 109.47106 * 59.99650 * 3 2 1 37 37 H 1.08005 * 125.89990 * 179.74502 * 6 5 4 38 38 H 1.08000 * 126.04462 * 179.97438 * 7 6 5 39 39 H 1.08999 * 110.37543 * 159.34253 * 12 11 9 40 40 H 1.09000 * 110.37101 * 281.56938 * 12 11 9 41 41 H 1.08999 * 110.61462 * 217.51385 * 13 12 11 42 42 H 1.09002 * 110.56068 * 94.69947 * 13 12 11 43 43 H 0.96997 * 120.00125 * 0.02562 * 18 16 14 44 44 H 1.09005 * 109.47290 * 60.00418 * 19 18 16 45 45 H 1.09002 * 109.47439 * 300.00174 * 19 18 16 46 46 H 1.08997 * 109.47402 * 59.99835 * 20 19 18 47 47 H 1.09002 * 109.46777 * 300.00109 * 20 19 18 48 48 H 1.09006 * 109.46686 * 60.00006 * 21 20 19 49 49 H 1.08999 * 109.46833 * 300.00381 * 21 20 19 50 50 H 0.97004 * 120.00417 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.8526 -0.2631 2.5199 6 6 2.4280 -1.1363 3.3063 7 6 2.9734 -2.1487 2.5103 8 6 2.7048 -1.8522 1.2177 9 6 3.1061 -2.6693 0.0167 10 1 2.4039 -2.5123 -0.8020 11 8 3.1718 -4.0705 0.3611 12 6 4.0104 -4.6717 -0.6493 13 6 5.1508 -3.6503 -0.8779 14 6 4.5400 -2.3045 -0.4273 15 1 4.5148 -1.5993 -1.2580 16 6 5.3203 -1.7306 0.7272 17 8 5.8661 -2.4708 1.5178 18 7 5.4118 -0.3948 0.8810 19 6 6.1708 0.1631 2.0030 20 6 6.1161 1.6911 1.9462 21 6 6.9093 2.2737 3.1176 22 6 6.8560 3.7787 3.0613 23 1 6.3144 4.2705 2.2667 24 6 7.5036 4.5279 4.0207 25 7 7.4566 5.8412 3.9719 26 14 8.4477 3.6774 5.3899 27 1 9.8539 3.4639 4.9629 28 1 8.4237 4.5254 6.6086 29 1 7.8161 2.3664 5.6864 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.4744 -1.0839 4.3841 38 1 3.5138 -3.0141 2.8646 39 1 4.4149 -5.6188 -0.2923 40 1 3.4463 -4.8236 -1.5695 41 1 5.4253 -3.6111 -1.9320 42 1 6.0173 -3.9005 -0.2657 43 1 4.9751 0.1973 0.2488 44 1 7.2080 -0.1663 1.9396 45 1 5.7371 -0.1810 2.9419 46 1 5.0789 2.0202 2.0098 47 1 6.5496 2.0355 1.0072 48 1 7.9465 1.9446 3.0534 49 1 6.4763 1.9293 4.0567 50 1 7.9125 6.3683 4.6466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339939589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:13 Heat of formation + Delta-G solvation = -38.219779 kcal Electronic energy + Delta-G solvation = -30804.354726 eV Core-core repulsion = 26832.076753 eV Total energy + Delta-G solvation = -3972.277974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.62068 -41.08101 -39.44542 -36.98373 -36.57150 -35.15697 -33.77755 -33.00117 -32.62163 -30.74020 -29.44229 -28.59645 -28.19203 -25.50323 -24.34839 -23.90160 -22.88344 -22.28747 -21.57969 -21.16703 -20.13392 -19.01651 -18.66912 -17.74324 -17.42336 -16.85240 -16.58562 -16.39178 -16.24218 -15.96850 -15.82330 -15.49603 -15.24076 -15.03559 -14.81025 -14.73811 -14.30512 -13.92330 -13.83649 -13.73657 -13.50940 -13.09187 -13.03323 -12.98015 -12.79039 -12.76845 -12.60556 -12.49554 -12.29688 -12.22818 -12.04289 -11.93136 -11.80241 -11.64987 -11.49583 -11.37393 -10.93664 -10.78711 -10.70102 -10.22315 -10.04606 -9.45414 -8.31929 -6.35535 0.80983 1.33280 1.35664 1.47396 1.47501 1.61133 1.87072 2.17711 2.33689 2.86034 3.03693 3.23037 3.46670 3.58423 3.68090 3.90756 3.94968 4.00338 4.06318 4.10103 4.14075 4.15261 4.18627 4.31447 4.44160 4.45726 4.61772 4.69261 4.69774 4.81500 4.82694 4.83715 4.84721 4.89044 4.91136 4.92466 4.97958 5.14217 5.18219 5.24000 5.28176 5.37757 5.47571 5.50323 5.61948 5.70493 5.75363 6.13730 6.24368 6.56825 6.71463 6.74427 7.28323 7.29284 8.84494 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003516 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.603381 B = 7961.035614 C = 9030.307036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 C -0.159 4.159 4 N -0.347 5.347 5 N -0.303 5.303 6 C 0.026 3.974 7 C -0.249 4.249 8 C 0.071 3.929 9 C 0.161 3.839 10 H 0.127 0.873 11 O -0.380 6.380 12 C 0.044 3.956 13 C -0.137 4.137 14 C -0.136 4.136 15 H 0.145 0.855 16 C 0.521 3.479 17 O -0.571 6.571 18 N -0.713 5.713 19 C 0.135 3.865 20 C -0.094 4.094 21 C -0.008 4.008 22 C -0.528 4.528 23 H 0.037 0.963 24 C 0.008 3.992 25 N -0.948 5.948 26 Si 0.944 3.056 27 H -0.264 1.264 28 H -0.283 1.283 29 H -0.253 1.253 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.186 0.814 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.067 0.933 43 H 0.405 0.595 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.020 0.980 49 H 0.014 0.986 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.887 -20.842 -17.455 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 C -0.217 4.217 4 N -0.132 5.132 5 N -0.125 5.125 6 C -0.158 4.158 7 C -0.279 4.279 8 C -0.057 4.057 9 C 0.101 3.899 10 H 0.144 0.856 11 O -0.298 6.298 12 C -0.032 4.032 13 C -0.175 4.175 14 C -0.158 4.158 15 H 0.163 0.837 16 C 0.308 3.692 17 O -0.450 6.450 18 N -0.364 5.364 19 C 0.011 3.989 20 C -0.132 4.132 21 C -0.046 4.046 22 C -0.566 4.566 23 H 0.055 0.945 24 C -0.189 4.189 25 N -0.589 5.589 26 Si 0.768 3.232 27 H -0.189 1.189 28 H -0.208 1.208 29 H -0.177 1.177 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.151 0.849 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.065 0.935 37 H 0.203 0.797 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.140 0.860 42 H 0.086 0.914 43 H 0.241 0.759 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.038 0.962 49 H 0.032 0.968 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.253 -20.147 -16.799 29.390 hybrid contribution 0.981 -0.015 1.174 1.530 sum -12.272 -20.162 -15.625 28.307 Atomic orbital electron populations 1.22132 0.92590 1.02869 1.03839 1.21787 0.96302 0.94229 0.83389 1.22125 1.01372 0.94351 1.03835 1.48936 1.41887 1.16613 1.05737 1.77307 1.24284 1.23290 0.87648 1.24038 0.97931 0.92986 1.00864 1.21170 1.11037 1.03354 0.92357 1.20678 0.98540 0.89903 0.96605 1.21265 0.94864 0.81817 0.91934 0.85550 1.89219 1.70581 1.18489 1.51518 1.23740 0.90226 0.97006 0.92238 1.23045 0.99370 0.90956 1.04114 1.22934 0.94412 1.01149 0.97309 0.83721 1.20677 0.79924 0.81827 0.86724 1.90669 1.48435 1.59651 1.46274 1.45944 1.53888 1.06846 1.29749 1.21141 0.95396 0.93370 0.88974 1.21407 1.00198 0.92028 0.99542 1.19424 0.95919 0.94137 0.95167 1.21399 1.32322 0.91554 1.11364 0.94465 1.25931 0.97207 0.95307 1.00479 1.70045 1.45455 1.06420 1.36963 0.85740 0.79583 0.79304 0.78560 1.18928 1.20839 1.17679 0.92167 0.93414 0.87755 0.84890 0.92759 0.87691 0.93544 0.79668 0.85516 0.88347 0.88410 0.85964 0.91442 0.75930 0.92430 0.93830 0.92919 0.91562 0.96199 0.96812 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.51 71.98 0.68 -1.35 16 2 C 0.14 2.07 3.63 44.99 0.16 2.24 16 3 C -0.16 -2.63 9.37 71.98 0.67 -1.95 16 4 N -0.35 -7.88 3.29 -314.29 -1.03 -8.92 16 5 N -0.30 -9.10 12.40 -57.02 -0.71 -9.81 16 6 C 0.03 0.79 12.03 85.23 1.02 1.82 16 7 C -0.25 -7.43 9.06 21.99 0.20 -7.23 16 8 C 0.07 1.68 4.86 41.40 0.20 1.88 16 9 C 0.16 2.70 3.24 30.35 0.10 2.79 16 10 H 0.13 1.12 7.16 -2.39 -0.02 1.10 16 11 O -0.38 -7.81 11.01 -148.98 -1.64 -9.45 16 12 C 0.04 0.54 7.64 72.59 0.55 1.09 16 13 C -0.14 -1.78 6.62 31.72 0.21 -1.57 16 14 C -0.14 -2.11 3.41 -10.52 -0.04 -2.15 16 15 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 16 C 0.52 13.65 4.66 87.66 0.41 14.05 16 17 O -0.57 -20.05 15.50 -3.04 -0.05 -20.09 16 18 N -0.71 -18.82 5.46 -463.05 -2.53 -21.34 16 19 C 0.14 4.59 5.67 86.38 0.49 5.08 16 20 C -0.09 -3.58 5.27 30.60 0.16 -3.42 16 21 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 22 C -0.53 -30.66 9.66 25.60 0.25 -30.41 16 23 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 24 C 0.01 0.47 5.47 84.66 0.46 0.93 16 25 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 26 Si 0.94 45.45 27.47 68.60 1.88 47.34 16 27 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 29 H -0.25 -11.62 6.54 99.48 0.65 -10.97 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.13 0.91 6.73 -2.39 -0.02 0.89 16 34 H 0.05 0.98 7.54 -2.39 -0.02 0.96 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.19 4.96 8.06 -2.91 -0.02 4.94 16 38 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 1.32 6.95 -2.39 -0.02 1.31 16 43 H 0.41 8.63 7.87 -92.71 -0.73 7.90 16 44 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 48 H 0.02 0.92 7.57 -2.38 -0.02 0.90 16 49 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 50 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -81.37 403.26 2.03 -79.34 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.14 Total: 20.99 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 5.67 Total: -18.48 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -3.97 Total: -99.63 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.69 Total: -29.55 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.34 kcal Total: -81.37 2.03 -79.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339939589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.117 kcal (2) G-P(sol) polarization free energy of solvation -81.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds