Wall clock time and date at job start Tue Mar 31 2020 19:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46836 * 2 1 4 4 N 1.46496 * 109.47199 * 119.99467 * 2 1 3 5 5 N 1.40088 * 126.04121 * 300.02974 * 4 2 1 6 6 C 1.30832 * 108.21382 * 179.97438 * 5 4 2 7 7 C 1.39881 * 108.19729 * 359.77778 * 6 5 4 8 8 C 1.34949 * 126.04091 * 120.00105 * 4 2 1 9 9 C 1.50701 * 126.12216 * 359.97438 * 8 4 2 10 10 H 1.09006 * 110.42025 * 27.93995 * 9 8 4 11 11 O 1.44429 * 110.37158 * 150.24668 * 9 8 4 12 12 C 1.44423 * 105.27385 * 159.34359 * 11 9 8 13 13 C 1.54482 * 104.80456 * 319.49114 * 12 11 9 14 14 C 1.54481 * 110.37212 * 265.63017 * 9 8 4 15 15 H 1.08998 * 110.50958 * 98.40918 * 14 9 8 16 16 C 1.50700 * 110.51218 * 335.83490 * 14 9 8 17 17 O 1.21280 * 119.99777 * 276.84498 * 16 14 9 18 18 N 1.34774 * 119.99813 * 96.56821 * 16 14 9 19 19 C 1.46501 * 119.99773 * 180.27398 * 18 16 14 20 20 C 1.52995 * 109.47057 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.47210 * 180.02562 * 20 19 18 22 22 C 1.50705 * 109.47242 * 180.02562 * 21 20 19 23 23 H 1.08001 * 119.99866 * 0.02562 * 22 21 20 24 24 C 1.37882 * 119.99811 * 179.97438 * 22 21 20 25 25 N 1.31511 * 119.99912 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99731 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46821 * 90.00010 * 26 24 22 28 28 H 1.48493 * 109.47044 * 209.99933 * 26 24 22 29 29 H 1.48499 * 109.47144 * 330.00158 * 26 24 22 30 30 H 1.08999 * 109.47069 * 299.99999 * 1 2 3 31 31 H 1.08993 * 109.47009 * 60.00349 * 1 2 3 32 32 H 1.09004 * 109.46726 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47607 * 239.99515 * 2 1 3 34 34 H 1.09000 * 109.46687 * 299.99407 * 3 2 1 35 35 H 1.08995 * 109.47419 * 59.99400 * 3 2 1 36 36 H 1.09001 * 109.46816 * 180.02562 * 3 2 1 37 37 H 1.07996 * 125.90582 * 179.97438 * 6 5 4 38 38 H 1.07999 * 126.03970 * 180.23084 * 7 6 5 39 39 H 1.08999 * 110.37382 * 78.31975 * 12 11 9 40 40 H 1.09005 * 110.37145 * 200.55107 * 12 11 9 41 41 H 1.09005 * 110.51103 * 265.33523 * 13 12 11 42 42 H 1.08996 * 110.51138 * 142.62601 * 13 12 11 43 43 H 0.96993 * 119.99911 * 0.27885 * 18 16 14 44 44 H 1.09003 * 109.47354 * 300.00405 * 19 18 16 45 45 H 1.09003 * 109.47061 * 60.00234 * 19 18 16 46 46 H 1.08996 * 109.47611 * 300.00101 * 20 19 18 47 47 H 1.09003 * 109.47109 * 60.00122 * 20 19 18 48 48 H 1.09003 * 109.47128 * 300.00218 * 21 20 19 49 49 H 1.09003 * 109.47134 * 59.99954 * 21 20 19 50 50 H 0.97005 * 119.99297 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 7 1.7587 -0.3241 2.5231 6 6 2.3624 -1.1784 3.3089 7 6 3.0209 -2.1180 2.5088 8 6 2.7975 -1.7922 1.2146 9 6 3.3194 -2.5314 0.0095 10 1 3.4251 -1.8525 -0.8368 11 8 4.5852 -3.1573 0.3129 12 6 4.7403 -4.2001 -0.6742 13 6 3.3339 -4.8239 -0.8137 14 6 2.3777 -3.7009 -0.3536 15 1 1.7058 -3.4133 -1.1623 16 6 1.5905 -4.1395 0.8543 17 8 2.0826 -4.9092 1.6520 18 7 0.3418 -3.6721 1.0510 19 6 -0.4211 -4.0939 2.2284 20 6 -1.7965 -3.4238 2.2118 21 6 -2.5931 -3.8638 3.4417 22 6 -3.9480 -3.2042 3.4250 23 1 -4.2145 -2.5383 2.6176 24 6 -4.8479 -3.4519 4.4399 25 7 -4.5239 -4.2641 5.4222 26 14 -6.5271 -2.6339 4.4195 27 1 -7.4900 -3.4984 3.6910 28 1 -6.9975 -2.4345 5.8138 29 1 -6.4286 -1.3184 3.7374 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4425 -0.0005 37 1 2.3514 -1.1629 4.3887 38 1 3.6061 -2.9542 2.8616 39 1 5.0638 -3.7772 -1.6253 40 1 5.4557 -4.9464 -0.3286 41 1 3.2373 -5.6964 -0.1675 42 1 3.1365 -5.0924 -1.8515 43 1 -0.0517 -3.0566 0.4130 44 1 -0.5447 -5.1768 2.2126 45 1 0.1145 -3.8025 3.1320 46 1 -1.6733 -2.3409 2.2274 47 1 -2.3319 -3.7156 1.3082 48 1 -2.7163 -4.9467 3.4265 49 1 -2.0575 -3.5717 4.3450 50 1 -5.1569 -4.4380 6.1364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339939591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:19 Heat of formation + Delta-G solvation = -16.563208 kcal Electronic energy + Delta-G solvation = -30763.969295 eV Core-core repulsion = 26792.630421 eV Total energy + Delta-G solvation = -3971.338874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.64100 -40.08606 -38.41993 -35.80646 -35.33850 -33.33156 -32.66933 -31.79508 -31.05986 -29.80092 -28.22007 -27.53058 -26.70749 -24.29793 -23.17940 -23.02104 -21.93396 -20.71605 -20.56766 -20.06107 -19.11503 -17.79409 -16.89445 -16.54927 -16.28998 -15.63888 -15.51700 -15.27170 -14.96597 -14.85872 -14.71394 -14.42546 -14.13771 -13.86924 -13.58159 -13.38626 -13.02186 -12.74833 -12.44060 -12.35859 -12.28292 -12.20026 -11.94956 -11.77955 -11.76319 -11.60652 -11.54061 -11.47072 -11.33743 -10.89430 -10.70130 -10.58822 -10.49924 -10.18315 -9.84628 -9.78930 -9.33576 -9.21936 -9.09347 -8.70567 -8.39624 -8.35700 -6.00267 -4.03101 1.81941 2.35987 2.71215 2.99723 3.31111 3.32541 3.37720 3.40833 3.59885 4.03260 4.20687 4.38487 4.45087 4.52088 4.63036 4.67304 4.69672 4.75966 4.87722 5.01516 5.02280 5.10943 5.28584 5.35537 5.37573 5.42319 5.45526 5.47727 5.52392 5.72319 5.76102 5.81455 5.82583 5.87348 5.91441 6.04617 6.19685 6.23018 6.46970 6.53174 6.63309 6.80527 6.85578 7.02925 7.03804 7.65048 7.72921 7.78456 7.80773 7.98475 8.38860 8.44058 9.03171 9.60793 11.11048 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.003340 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.195600 B = 8380.521098 C = 9452.054100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 C -0.160 4.160 4 N -0.357 5.357 5 N -0.274 5.274 6 C 0.043 3.957 7 C -0.219 4.219 8 C 0.060 3.940 9 C 0.162 3.838 10 H 0.085 0.915 11 O -0.348 6.348 12 C 0.048 3.952 13 C -0.141 4.141 14 C -0.141 4.141 15 H 0.101 0.899 16 C 0.524 3.476 17 O -0.529 6.529 18 N -0.720 5.720 19 C 0.122 3.878 20 C -0.118 4.118 21 C 0.026 3.974 22 C -0.520 4.520 23 H 0.054 0.946 24 C 0.057 3.943 25 N -0.893 5.893 26 Si 0.892 3.108 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.182 0.818 38 H 0.147 0.853 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.391 0.609 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.018 0.982 49 H 0.019 0.981 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.355 6.106 -17.626 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 C -0.218 4.218 4 N -0.143 5.143 5 N -0.095 5.095 6 C -0.143 4.143 7 C -0.248 4.248 8 C -0.066 4.066 9 C 0.102 3.898 10 H 0.102 0.898 11 O -0.266 6.266 12 C -0.029 4.029 13 C -0.179 4.179 14 C -0.163 4.163 15 H 0.120 0.880 16 C 0.309 3.691 17 O -0.405 6.405 18 N -0.370 5.370 19 C -0.001 4.001 20 C -0.156 4.156 21 C -0.011 4.011 22 C -0.559 4.559 23 H 0.072 0.928 24 C -0.144 4.144 25 N -0.532 5.532 26 Si 0.720 3.280 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.199 1.199 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.199 0.801 38 H 0.165 0.835 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.224 0.776 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.036 0.964 49 H 0.037 0.963 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.998 6.631 -16.860 25.538 hybrid contribution -0.876 -0.101 -0.354 0.950 sum 17.122 6.530 -17.214 25.142 Atomic orbital electron populations 1.22167 0.92742 1.03195 1.03880 1.21293 0.95951 0.93922 0.83618 1.22125 1.01537 0.94547 1.03580 1.48643 1.39223 1.20817 1.05583 1.77353 1.22859 1.23273 0.85997 1.23858 0.96646 0.93534 1.00220 1.21256 1.08633 1.04163 0.90790 1.20277 0.98639 0.91517 0.96152 1.20956 0.83992 0.92174 0.92717 0.89769 1.89236 1.35442 1.48923 1.52962 1.23448 0.97300 0.90028 0.92144 1.22958 0.93405 0.98876 1.02644 1.22811 0.98350 0.97093 0.98077 0.88042 1.19845 0.81640 0.80934 0.86676 1.90684 1.68923 1.35205 1.45726 1.46162 1.15256 1.48322 1.27231 1.21583 0.92474 0.99336 0.86703 1.21852 0.92663 0.99322 1.01749 1.19003 0.94038 0.96775 0.91331 1.21182 0.99302 1.27520 1.07882 0.92787 1.25018 0.98573 0.95282 0.95527 1.69967 1.35713 1.36072 1.11472 0.86601 0.84379 0.79814 0.77244 1.20692 1.21181 1.19910 0.90455 0.90683 0.92081 0.88892 0.90797 0.90807 0.92245 0.80130 0.83483 0.91979 0.88257 0.88460 0.89768 0.77605 0.91997 0.91803 0.92929 0.93087 0.96413 0.96297 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.45 37.16 0.35 -1.14 16 2 C 0.15 1.37 3.65 -67.93 -0.25 1.13 16 3 C -0.16 -1.28 9.45 37.16 0.35 -0.93 16 4 N -0.36 -4.40 3.28 -50.70 -0.17 -4.57 16 5 N -0.27 -4.10 12.43 30.63 0.38 -3.72 16 6 C 0.04 0.63 12.03 -17.36 -0.21 0.43 16 7 C -0.22 -3.26 9.05 -40.01 -0.36 -3.62 16 8 C 0.06 0.78 4.87 -82.26 -0.40 0.38 16 9 C 0.16 1.70 3.28 -27.11 -0.09 1.61 16 10 H 0.08 0.66 7.06 -51.93 -0.37 0.29 16 11 O -0.35 -4.09 11.01 -35.23 -0.39 -4.48 16 12 C 0.05 0.39 7.63 37.94 0.29 0.68 16 13 C -0.14 -1.22 6.59 -25.16 -0.17 -1.39 16 14 C -0.14 -1.42 3.42 -90.20 -0.31 -1.73 16 15 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 16 C 0.52 7.57 4.66 -10.99 -0.05 7.52 16 17 O -0.53 -9.63 15.48 5.56 0.09 -9.54 16 18 N -0.72 -10.49 5.47 -60.30 -0.33 -10.82 16 19 C 0.12 2.21 5.67 -4.04 -0.02 2.19 16 20 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 21 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 22 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 23 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 24 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 25 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 26 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.60 6.99 -51.93 -0.36 0.24 16 33 H 0.09 0.60 6.65 -51.93 -0.35 0.26 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.18 2.30 8.06 -52.49 -0.42 1.87 16 38 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 1.07 6.96 -51.93 -0.36 0.71 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.39 4.85 7.32 -40.82 -0.30 4.56 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -34.80 405.64 -8.61 -43.41 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.46 Total: 3.58 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.55 Total: -10.33 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.62 Total: -45.43 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.30 Total: -14.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.80 -8.61 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339939591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.844 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds