Wall clock time and date at job start Tue Mar 31 2020 19:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46836 * 2 1 4 4 N 1.46496 * 109.47199 * 119.99467 * 2 1 3 5 5 N 1.40088 * 126.04121 * 300.02974 * 4 2 1 6 6 C 1.30832 * 108.21382 * 179.97438 * 5 4 2 7 7 C 1.39881 * 108.19729 * 359.77778 * 6 5 4 8 8 C 1.34949 * 126.04091 * 120.00105 * 4 2 1 9 9 C 1.50701 * 126.12216 * 359.97438 * 8 4 2 10 10 H 1.09006 * 110.42025 * 27.93995 * 9 8 4 11 11 O 1.44429 * 110.37158 * 150.24668 * 9 8 4 12 12 C 1.44423 * 105.27385 * 159.34359 * 11 9 8 13 13 C 1.54482 * 104.80456 * 319.49114 * 12 11 9 14 14 C 1.54481 * 110.37212 * 265.63017 * 9 8 4 15 15 H 1.08998 * 110.50958 * 98.40918 * 14 9 8 16 16 C 1.50700 * 110.51218 * 335.83490 * 14 9 8 17 17 O 1.21280 * 119.99777 * 276.84498 * 16 14 9 18 18 N 1.34774 * 119.99813 * 96.56821 * 16 14 9 19 19 C 1.46501 * 119.99773 * 180.27398 * 18 16 14 20 20 C 1.52995 * 109.47057 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.47210 * 180.02562 * 20 19 18 22 22 C 1.50705 * 109.47242 * 180.02562 * 21 20 19 23 23 H 1.08001 * 119.99866 * 0.02562 * 22 21 20 24 24 C 1.37882 * 119.99811 * 179.97438 * 22 21 20 25 25 N 1.31511 * 119.99912 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99731 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46821 * 90.00010 * 26 24 22 28 28 H 1.48493 * 109.47044 * 209.99933 * 26 24 22 29 29 H 1.48499 * 109.47144 * 330.00158 * 26 24 22 30 30 H 1.08999 * 109.47069 * 299.99999 * 1 2 3 31 31 H 1.08993 * 109.47009 * 60.00349 * 1 2 3 32 32 H 1.09004 * 109.46726 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47607 * 239.99515 * 2 1 3 34 34 H 1.09000 * 109.46687 * 299.99407 * 3 2 1 35 35 H 1.08995 * 109.47419 * 59.99400 * 3 2 1 36 36 H 1.09001 * 109.46816 * 180.02562 * 3 2 1 37 37 H 1.07996 * 125.90582 * 179.97438 * 6 5 4 38 38 H 1.07999 * 126.03970 * 180.23084 * 7 6 5 39 39 H 1.08999 * 110.37382 * 78.31975 * 12 11 9 40 40 H 1.09005 * 110.37145 * 200.55107 * 12 11 9 41 41 H 1.09005 * 110.51103 * 265.33523 * 13 12 11 42 42 H 1.08996 * 110.51138 * 142.62601 * 13 12 11 43 43 H 0.96993 * 119.99911 * 0.27885 * 18 16 14 44 44 H 1.09003 * 109.47354 * 300.00405 * 19 18 16 45 45 H 1.09003 * 109.47061 * 60.00234 * 19 18 16 46 46 H 1.08996 * 109.47611 * 300.00101 * 20 19 18 47 47 H 1.09003 * 109.47109 * 60.00122 * 20 19 18 48 48 H 1.09003 * 109.47128 * 300.00218 * 21 20 19 49 49 H 1.09003 * 109.47134 * 59.99954 * 21 20 19 50 50 H 0.97005 * 119.99297 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 7 1.7587 -0.3241 2.5231 6 6 2.3624 -1.1784 3.3089 7 6 3.0209 -2.1180 2.5088 8 6 2.7975 -1.7922 1.2146 9 6 3.3194 -2.5314 0.0095 10 1 3.4251 -1.8525 -0.8368 11 8 4.5852 -3.1573 0.3129 12 6 4.7403 -4.2001 -0.6742 13 6 3.3339 -4.8239 -0.8137 14 6 2.3777 -3.7009 -0.3536 15 1 1.7058 -3.4133 -1.1623 16 6 1.5905 -4.1395 0.8543 17 8 2.0826 -4.9092 1.6520 18 7 0.3418 -3.6721 1.0510 19 6 -0.4211 -4.0939 2.2284 20 6 -1.7965 -3.4238 2.2118 21 6 -2.5931 -3.8638 3.4417 22 6 -3.9480 -3.2042 3.4250 23 1 -4.2145 -2.5383 2.6176 24 6 -4.8479 -3.4519 4.4399 25 7 -4.5239 -4.2641 5.4222 26 14 -6.5271 -2.6339 4.4195 27 1 -7.4900 -3.4984 3.6910 28 1 -6.9975 -2.4345 5.8138 29 1 -6.4286 -1.3184 3.7374 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4425 -0.0005 37 1 2.3514 -1.1629 4.3887 38 1 3.6061 -2.9542 2.8616 39 1 5.0638 -3.7772 -1.6253 40 1 5.4557 -4.9464 -0.3286 41 1 3.2373 -5.6964 -0.1675 42 1 3.1365 -5.0924 -1.8515 43 1 -0.0517 -3.0566 0.4130 44 1 -0.5447 -5.1768 2.2126 45 1 0.1145 -3.8025 3.1320 46 1 -1.6733 -2.3409 2.2274 47 1 -2.3319 -3.7156 1.3082 48 1 -2.7163 -4.9467 3.4265 49 1 -2.0575 -3.5717 4.3450 50 1 -5.1569 -4.4380 6.1364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339939591.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:17 Heat of formation + Delta-G solvation = -40.697591 kcal Electronic energy + Delta-G solvation = -30765.015840 eV Core-core repulsion = 26792.630421 eV Total energy + Delta-G solvation = -3972.385419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.62341 -41.08619 -39.45131 -36.95899 -36.56290 -35.20022 -33.72805 -32.78669 -32.62762 -30.73463 -29.28329 -28.40690 -28.18215 -25.62440 -24.49303 -23.90325 -22.94343 -22.36964 -21.58622 -21.19436 -20.11099 -18.76180 -18.53348 -17.73427 -17.43053 -16.79885 -16.57128 -16.43273 -16.36722 -15.95125 -15.87568 -15.51365 -15.20755 -15.03462 -14.80132 -14.33650 -14.25248 -13.88345 -13.80576 -13.68723 -13.45534 -13.07571 -13.02162 -12.97142 -12.78627 -12.62382 -12.61338 -12.49891 -12.40806 -12.27450 -12.20976 -12.02913 -11.73109 -11.60504 -11.49894 -11.27314 -10.91805 -10.68851 -10.57965 -10.22240 -10.05771 -9.45283 -8.21421 -6.33326 0.80758 1.39078 1.41115 1.47814 1.51950 1.60830 1.86135 2.16394 2.40632 2.86149 3.12140 3.23112 3.46568 3.58235 3.68098 3.90921 3.95797 4.00413 4.08541 4.13602 4.15109 4.16587 4.18724 4.31977 4.45672 4.48786 4.61804 4.70005 4.70915 4.82263 4.83511 4.85168 4.88646 4.90193 4.92273 4.98014 5.10038 5.14282 5.18323 5.25601 5.29287 5.43615 5.49757 5.65569 5.69573 5.75677 5.80242 6.14373 6.19100 6.57503 6.73697 6.83229 7.29171 7.36237 8.90835 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.003340 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.195600 B = 8380.521098 C = 9452.054100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 C -0.155 4.155 4 N -0.346 5.346 5 N -0.302 5.302 6 C 0.025 3.975 7 C -0.251 4.251 8 C 0.071 3.929 9 C 0.162 3.838 10 H 0.130 0.870 11 O -0.380 6.380 12 C 0.044 3.956 13 C -0.138 4.138 14 C -0.135 4.135 15 H 0.147 0.853 16 C 0.519 3.481 17 O -0.574 6.574 18 N -0.711 5.711 19 C 0.139 3.861 20 C -0.095 4.095 21 C 0.028 3.972 22 C -0.540 4.540 23 H 0.065 0.935 24 C -0.003 4.003 25 N -0.935 5.935 26 Si 0.967 3.033 27 H -0.270 1.270 28 H -0.284 1.284 29 H -0.261 1.261 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.184 0.816 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.405 0.595 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.055 0.945 47 H 0.069 0.931 48 H -0.008 1.008 49 H -0.014 1.014 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.002 7.636 -22.323 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 C -0.213 4.213 4 N -0.131 5.131 5 N -0.124 5.124 6 C -0.159 4.159 7 C -0.281 4.281 8 C -0.057 4.057 9 C 0.102 3.898 10 H 0.147 0.853 11 O -0.299 6.299 12 C -0.032 4.032 13 C -0.176 4.176 14 C -0.157 4.157 15 H 0.165 0.835 16 C 0.307 3.693 17 O -0.452 6.452 18 N -0.362 5.362 19 C 0.015 3.985 20 C -0.133 4.133 21 C -0.010 4.010 22 C -0.578 4.578 23 H 0.083 0.917 24 C -0.200 4.200 25 N -0.575 5.575 26 Si 0.791 3.209 27 H -0.195 1.195 28 H -0.210 1.210 29 H -0.185 1.185 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.201 0.799 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.242 0.758 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.011 0.989 49 H 0.004 0.996 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.648 8.192 -21.599 29.070 hybrid contribution -0.715 -0.610 1.117 1.460 sum 16.933 7.582 -20.482 27.636 Atomic orbital electron populations 1.22172 0.92863 1.02816 1.03956 1.21819 0.95952 0.94743 0.83318 1.22103 1.01401 0.93926 1.03874 1.48949 1.38189 1.20378 1.05578 1.77280 1.23646 1.23895 0.87560 1.24014 0.97144 0.93968 1.00805 1.21171 1.10181 1.04343 0.92364 1.20674 0.97398 0.91130 0.96487 1.21283 0.83599 0.92551 0.92417 0.85293 1.89223 1.35855 1.50023 1.54781 1.23693 0.97047 0.89495 0.92935 1.22997 0.93336 0.97111 1.04123 1.22940 0.98555 0.97539 0.96634 0.83508 1.20752 0.81172 0.79794 0.87615 1.90674 1.69688 1.37163 1.47722 1.45946 1.15438 1.48673 1.26168 1.21062 0.91712 0.98224 0.87524 1.21518 0.92884 0.99324 0.99565 1.18894 0.94289 0.95089 0.92700 1.21624 1.00157 1.27699 1.08281 0.91703 1.26029 1.03168 0.95827 0.95000 1.70120 1.37397 1.37627 1.12330 0.85415 0.78846 0.79194 0.77411 1.19517 1.21012 1.18497 0.93592 0.87405 0.92623 0.84813 0.87670 0.93344 0.92360 0.79881 0.85728 0.88241 0.88401 0.91645 0.85814 0.75846 0.93331 0.94595 0.92628 0.91261 0.98949 0.99604 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.45 71.98 0.68 -1.80 16 2 C 0.14 2.04 3.65 44.99 0.16 2.20 16 3 C -0.16 -2.04 9.45 71.98 0.68 -1.36 16 4 N -0.35 -8.08 3.28 -314.30 -1.03 -9.11 16 5 N -0.30 -9.35 12.43 -57.02 -0.71 -10.06 16 6 C 0.03 0.80 12.03 85.24 1.03 1.83 16 7 C -0.25 -7.92 9.05 21.99 0.20 -7.72 16 8 C 0.07 1.77 4.87 41.40 0.20 1.97 16 9 C 0.16 2.83 3.28 30.35 0.10 2.93 16 10 H 0.13 1.18 7.06 -2.38 -0.02 1.16 16 11 O -0.38 -8.20 11.01 -148.98 -1.64 -9.84 16 12 C 0.04 0.58 7.63 72.49 0.55 1.13 16 13 C -0.14 -1.94 6.59 31.61 0.21 -1.73 16 14 C -0.13 -2.23 3.42 -10.52 -0.04 -2.27 16 15 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 16 C 0.52 14.62 4.66 87.66 0.41 15.03 16 17 O -0.57 -21.68 15.48 -3.03 -0.05 -21.73 16 18 N -0.71 -20.19 5.47 -463.07 -2.53 -22.72 16 19 C 0.14 5.26 5.67 86.38 0.49 5.75 16 20 C -0.10 -3.88 5.27 30.59 0.16 -3.71 16 21 C 0.03 1.51 4.97 29.85 0.15 1.66 16 22 C -0.54 -30.86 9.11 25.60 0.23 -30.62 16 23 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 24 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 25 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 26 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 29 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.91 6.99 -2.38 -0.02 0.90 16 33 H 0.13 0.89 6.65 -2.39 -0.02 0.87 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.18 5.31 8.06 -2.91 -0.02 5.29 16 38 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.10 1.27 8.14 -2.38 -0.02 1.26 16 41 H 0.06 1.38 6.96 -2.38 -0.02 1.36 16 42 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.41 9.07 7.32 -92.71 -0.68 8.39 16 44 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 48 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 49 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 50 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -82.22 405.64 2.28 -79.95 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.24 Total: 21.29 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.68 Total: -16.39 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -3.99 Total: -99.80 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.69 Total: -31.57 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -82.22 2.28 -79.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339939591.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.248 kcal (2) G-P(sol) polarization free energy of solvation -82.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds