Wall clock time and date at job start Tue Mar 31 2020 18:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34626 * 116.99714 * 180.02562 * 3 2 1 5 5 O 1.21341 * 120.00505 * 359.97438 * 4 3 2 6 6 C 1.48674 * 119.99884 * 180.02562 * 4 3 2 7 7 N 1.30705 * 119.03101 * 359.97438 * 6 4 3 8 8 C 1.35292 * 120.56920 * 180.02562 * 7 6 4 9 9 N 1.31847 * 120.59872 * 179.97438 * 8 7 6 10 10 C 1.46506 * 119.99803 * 0.02562 * 9 8 7 11 11 H 1.08998 * 109.47230 * 0.02562 * 10 9 8 12 12 C 1.50706 * 109.46932 * 120.00078 * 10 9 8 13 13 H 1.08005 * 119.99771 * 359.97438 * 12 10 9 14 14 C 1.37875 * 119.99820 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99780 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99876 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47448 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47466 * 119.99679 * 16 14 12 19 19 H 1.48506 * 109.46655 * 239.99694 * 16 14 12 20 20 C 1.53001 * 109.47136 * 239.99573 * 10 9 8 21 21 C 1.53001 * 109.46737 * 65.00343 * 20 10 9 22 22 C 1.46855 * 118.80999 * 0.02562 * 8 7 6 23 23 C 1.35061 * 118.23780 * 359.97438 * 22 8 7 24 24 C 1.50704 * 120.36604 * 180.02562 * 23 22 8 25 25 C 1.53004 * 109.46935 * 0.02562 * 24 23 22 26 26 C 1.53000 * 109.47001 * 120.00026 * 24 23 22 27 27 C 1.52993 * 109.47737 * 240.00547 * 24 23 22 28 28 N 1.36069 * 119.03436 * 179.73003 * 6 4 3 29 29 H 0.97006 * 119.40909 * 359.97438 * 28 6 4 30 30 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 31 31 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 32 32 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 34 34 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 35 35 H 0.97007 * 119.99160 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.46728 * 184.99905 * 20 10 9 37 37 H 1.09000 * 109.47145 * 305.00447 * 20 10 9 38 38 H 1.09001 * 109.47473 * 59.99664 * 21 20 10 39 39 H 1.09001 * 109.46634 * 180.02562 * 21 20 10 40 40 H 1.09004 * 109.47257 * 299.99507 * 21 20 10 41 41 H 1.07997 * 120.88368 * 179.97438 * 22 8 7 42 42 H 1.08998 * 109.47709 * 59.99784 * 25 24 23 43 43 H 1.09003 * 109.46901 * 179.97438 * 25 24 23 44 44 H 1.09007 * 109.47039 * 299.99393 * 25 24 23 45 45 H 1.08999 * 109.47003 * 60.00481 * 26 24 23 46 46 H 1.09003 * 109.47529 * 180.02562 * 26 24 23 47 47 H 1.08995 * 109.47573 * 300.00537 * 26 24 23 48 48 H 1.09004 * 109.47330 * 59.99576 * 27 24 23 49 49 H 1.08994 * 109.47582 * 179.97438 * 27 24 23 50 50 H 1.09008 * 109.46813 * 299.99926 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5453 -0.0005 5 8 4.0879 0.5831 -0.0005 6 6 3.9170 2.9192 0.0000 7 7 3.1034 3.9421 0.0005 8 6 3.5868 5.2057 0.0005 9 7 2.7667 6.2381 0.0005 10 6 1.3176 6.0223 0.0010 11 1 1.1095 4.9524 0.0019 12 6 0.7165 6.6514 1.2316 13 1 1.3507 7.1606 1.9423 14 6 -0.6426 6.5760 1.4505 15 7 -1.4146 5.9555 0.5852 16 14 -1.3877 7.3564 2.9754 17 1 -0.3138 7.9888 3.7829 18 1 -2.3761 8.3881 2.5709 19 1 -2.0654 6.3120 3.7850 20 6 0.7065 6.6603 -1.2481 21 6 1.2227 5.9380 -2.4942 22 6 5.0415 5.4070 -0.0007 23 6 5.8375 4.3159 -0.0011 24 6 7.3370 4.4668 -0.0017 25 6 7.7000 5.9531 -0.0011 26 6 7.9172 3.8000 1.2472 27 6 7.9163 3.8006 -1.2513 28 7 5.2688 3.0747 0.0051 29 1 5.8385 2.2896 0.0086 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 -2.3709 5.9028 0.7392 36 1 -0.3795 6.5777 -1.2040 37 1 0.9893 7.7120 -1.2944 38 1 0.9399 4.8863 -2.4479 39 1 0.7877 6.3928 -3.3841 40 1 2.3087 6.0206 -2.5383 41 1 5.4636 6.4010 -0.0011 42 1 7.2874 6.4276 0.8893 43 1 8.7845 6.0623 -0.0010 44 1 7.2866 6.4285 -0.8907 45 1 7.6586 2.7412 1.2471 46 1 9.0017 3.9095 1.2471 47 1 7.5045 4.2747 2.1374 48 1 7.5029 4.2755 -2.1411 49 1 9.0007 3.9101 -1.2519 50 1 7.6577 2.7416 -1.2514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342832922.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:58 Heat of formation + Delta-G solvation = -51.625682 kcal Electronic energy + Delta-G solvation = -30202.458675 eV Core-core repulsion = 26229.599378 eV Total energy + Delta-G solvation = -3972.859297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.51140 -41.26104 -38.50123 -38.09306 -37.25132 -35.25197 -33.72996 -33.23189 -32.42115 -31.32988 -28.86512 -28.26213 -28.15133 -26.81031 -25.42217 -24.40965 -23.72123 -22.46363 -21.46762 -20.72296 -19.70326 -19.00582 -18.54467 -18.08608 -17.94194 -17.68921 -16.88324 -16.22989 -16.13869 -15.60707 -15.21037 -15.00618 -14.95761 -14.79641 -14.65272 -14.47699 -14.13500 -13.84148 -13.67285 -13.28579 -13.16712 -13.07932 -12.92367 -12.87869 -12.75155 -12.59660 -12.56771 -12.51271 -12.37679 -12.27692 -12.13193 -11.96267 -11.76896 -11.70218 -11.65272 -11.62599 -11.29304 -11.10571 -10.87042 -10.56188 -9.71377 -8.46066 -8.03820 -6.21843 -0.57949 0.48406 0.75120 1.21263 1.36154 1.37225 1.50416 2.10840 2.40753 2.82370 2.84527 3.14387 3.17792 3.66516 3.89132 3.96461 3.97788 3.98946 3.99463 4.25381 4.28256 4.34083 4.47810 4.53112 4.66055 4.68590 4.70954 4.76521 4.79812 4.87719 4.89735 4.94208 5.01033 5.02836 5.06883 5.12611 5.16737 5.27766 5.28567 5.31082 5.37680 5.41135 5.45364 5.59235 5.61044 5.83711 6.05404 6.06540 6.24335 6.35758 6.79067 6.97390 7.30544 7.54794 8.95975 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008446 B = 0.004483 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.192283 B = 6244.631428 C = 8234.617084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.339 6.339 4 C 0.541 3.459 5 O -0.493 6.493 6 C 0.372 3.628 7 N -0.512 5.512 8 C 0.295 3.705 9 N -0.528 5.528 10 C 0.208 3.792 11 H 0.004 0.996 12 C -0.523 4.523 13 H 0.036 0.964 14 C 0.015 3.985 15 N -0.912 5.912 16 Si 0.961 3.039 17 H -0.276 1.276 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.210 4.210 23 C 0.167 3.833 24 C -0.018 4.018 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.143 4.143 28 N -0.600 5.600 29 H 0.432 0.568 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.263 0.737 36 H 0.071 0.929 37 H 0.024 0.976 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.034 0.966 41 H 0.162 0.838 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.093 0.907 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.522 -13.052 -3.051 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.252 6.252 4 C 0.381 3.619 5 O -0.379 6.379 6 C 0.093 3.907 7 N -0.241 5.241 8 C 0.019 3.981 9 N -0.247 5.247 10 C 0.098 3.902 11 H 0.022 0.978 12 C -0.562 4.562 13 H 0.054 0.946 14 C -0.184 4.184 15 N -0.552 5.552 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.139 4.139 21 C -0.179 4.179 22 C -0.240 4.240 23 C 0.060 3.940 24 C -0.019 4.019 25 C -0.202 4.202 26 C -0.201 4.201 27 C -0.200 4.200 28 N -0.226 5.226 29 H 0.273 0.727 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.180 0.820 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.112 0.888 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.369 -12.208 -3.084 22.270 hybrid contribution -0.470 -0.414 0.806 1.021 sum 17.899 -12.622 -2.278 22.020 Atomic orbital electron populations 1.21863 0.91413 1.04558 1.03049 1.23583 0.96576 0.77476 1.04163 1.86778 1.21455 1.35247 1.81757 1.20139 0.82155 0.86490 0.73145 1.90819 1.60557 1.40684 1.45885 1.20873 0.81903 0.92549 0.95392 1.69396 1.36307 1.00670 1.17738 1.21712 0.93826 0.85284 0.97298 1.73122 1.07499 1.28025 1.16023 1.19013 0.82825 0.94796 0.93523 0.97832 1.21341 0.92773 1.35532 1.06507 0.94589 1.25685 0.97071 0.95869 0.99746 1.70036 1.04901 1.43578 1.36640 0.85471 0.78135 0.78414 0.79361 1.20046 1.19691 1.20033 1.21378 1.01770 0.96868 0.93838 1.21556 0.99267 0.99214 0.97911 1.22160 0.89177 1.00302 1.12409 1.20722 0.96248 0.82106 0.94891 1.19822 0.84062 0.99221 0.98798 1.21990 1.03381 0.92231 1.02623 1.21959 1.02787 1.00285 0.95076 1.21949 1.02756 1.00278 0.94992 1.41538 1.04205 1.09868 1.66959 0.72716 0.92753 0.92317 0.86538 0.89052 0.89397 0.92805 0.91044 0.95710 0.94909 0.92356 0.94702 0.82020 0.92396 0.88934 0.92091 0.91883 0.88753 0.92896 0.92614 0.88809 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 10.29 71.98 0.74 -2.56 16 2 C 0.05 1.26 6.19 71.98 0.45 1.70 16 3 O -0.34 -11.32 10.01 -55.34 -0.55 -11.87 16 4 C 0.54 16.73 8.00 70.61 0.56 17.30 16 5 O -0.49 -13.52 16.16 20.35 0.33 -13.20 16 6 C 0.37 12.53 7.68 137.11 1.05 13.58 16 7 N -0.51 -22.73 8.55 -182.18 -1.56 -24.29 16 8 C 0.30 13.50 7.60 136.49 1.04 14.53 16 9 N -0.53 -28.51 9.65 -324.19 -3.13 -31.64 16 10 C 0.21 12.46 2.30 44.25 0.10 12.56 16 11 H 0.00 0.25 6.70 -2.39 -0.02 0.24 16 12 C -0.52 -33.36 8.84 25.60 0.23 -33.14 16 13 H 0.04 2.36 7.81 -2.91 -0.02 2.33 16 14 C 0.01 0.91 5.29 84.65 0.45 1.36 16 15 N -0.91 -56.37 11.29 21.45 0.24 -56.12 16 16 Si 0.96 47.55 29.54 68.60 2.03 49.57 16 17 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 18 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 20 C -0.10 -5.62 5.45 30.59 0.17 -5.46 16 21 C -0.12 -5.80 9.80 71.98 0.71 -5.09 16 22 C -0.21 -7.02 9.22 23.79 0.22 -6.80 16 23 C 0.17 4.04 5.46 41.10 0.22 4.27 16 24 C -0.02 -0.26 0.88 -52.93 -0.05 -0.31 16 25 C -0.14 -2.03 7.14 71.98 0.51 -1.52 16 26 C -0.14 -1.65 8.37 71.98 0.60 -1.04 16 27 C -0.14 -1.54 8.38 71.98 0.60 -0.93 16 28 N -0.60 -14.77 5.11 -175.69 -0.90 -15.67 16 29 H 0.43 7.76 6.97 -92.70 -0.65 7.12 16 30 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 36 H 0.07 4.34 5.95 -2.39 -0.01 4.33 16 37 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.03 1.60 7.75 -2.38 -0.02 1.59 16 41 H 0.16 4.98 5.95 -2.91 -0.02 4.96 16 42 H 0.06 0.95 7.53 -2.39 -0.02 0.94 16 43 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.96 7.53 -2.38 -0.02 0.94 16 45 H 0.06 0.65 7.58 -2.39 -0.02 0.63 16 46 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.06 0.61 7.62 -2.38 -0.02 0.59 16 Total: -1.00 -81.79 408.09 4.36 -77.43 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.29 Total: 17.33 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 7.61 Total: 8.45 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -5.34 Total: -127.72 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.23 Total: -25.07 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -81.79 4.36 -77.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342832922.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.807 kcal (2) G-P(sol) polarization free energy of solvation -81.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds