Wall clock time and date at job start Tue Mar 31 2020 18:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.46926 * 2 1 4 4 C 1.34623 * 117.00070 * 180.02562 * 3 2 1 5 5 O 1.21349 * 119.99748 * 359.97438 * 4 3 2 6 6 C 1.48675 * 120.00105 * 180.02562 * 4 3 2 7 7 N 1.30693 * 119.02919 * 0.02562 * 6 4 3 8 8 C 1.35303 * 120.56886 * 179.97438 * 7 6 4 9 9 N 1.31852 * 120.59581 * 180.02562 * 8 7 6 10 10 C 1.46493 * 119.99959 * 359.97438 * 9 8 7 11 11 H 1.08997 * 109.47814 * 0.02562 * 10 9 8 12 12 C 1.50696 * 109.47151 * 239.99700 * 10 9 8 13 13 H 1.07993 * 120.00297 * 0.02562 * 12 10 9 14 14 C 1.37881 * 120.00031 * 180.02562 * 12 10 9 15 15 N 1.31520 * 119.99847 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99990 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47166 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47306 * 120.00275 * 16 14 12 19 19 H 1.48501 * 109.47058 * 239.99945 * 16 14 12 20 20 C 1.53008 * 109.46812 * 120.00193 * 10 9 8 21 21 C 1.52995 * 109.46946 * 294.99798 * 20 10 9 22 22 C 1.46846 * 118.80314 * 0.02562 * 8 7 6 23 23 C 1.35064 * 118.24684 * 0.02562 * 22 8 7 24 24 C 1.50707 * 120.36786 * 180.02562 * 23 22 8 25 25 C 1.53004 * 109.46982 * 359.97438 * 24 23 22 26 26 C 1.52996 * 109.47156 * 119.99774 * 24 23 22 27 27 C 1.53003 * 109.46789 * 240.00162 * 24 23 22 28 28 N 1.36067 * 119.02920 * 180.02562 * 6 4 3 29 29 H 0.97004 * 119.41544 * 0.03218 * 28 6 4 30 30 H 1.08994 * 109.47635 * 299.99727 * 1 2 3 31 31 H 1.08997 * 109.47103 * 60.00341 * 1 2 3 32 32 H 1.09003 * 109.46920 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47036 * 240.00270 * 2 1 3 34 34 H 1.09003 * 109.47331 * 120.00046 * 2 1 3 35 35 H 0.97003 * 119.99304 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47269 * 55.00035 * 20 10 9 37 37 H 1.09001 * 109.47156 * 174.99876 * 20 10 9 38 38 H 1.09000 * 109.47069 * 179.97438 * 21 20 10 39 39 H 1.09000 * 109.47330 * 300.00200 * 21 20 10 40 40 H 1.09001 * 109.47130 * 60.00062 * 21 20 10 41 41 H 1.08004 * 120.87750 * 180.26742 * 22 8 7 42 42 H 1.08999 * 109.46664 * 60.00433 * 25 24 23 43 43 H 1.08996 * 109.46732 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.47200 * 300.00255 * 25 24 23 45 45 H 1.09007 * 109.46871 * 59.99960 * 26 24 23 46 46 H 1.08996 * 109.47263 * 179.97438 * 26 24 23 47 47 H 1.08997 * 109.46798 * 300.00159 * 26 24 23 48 48 H 1.09001 * 109.47515 * 59.99670 * 27 24 23 49 49 H 1.08996 * 109.46932 * 180.02562 * 27 24 23 50 50 H 1.09007 * 109.46609 * 299.99656 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3486 1.5455 -0.0005 5 8 4.0878 0.5831 -0.0005 6 6 3.9168 2.9194 0.0000 7 7 3.1032 3.9422 0.0015 8 6 3.5865 5.2059 0.0026 9 7 2.7662 6.2381 0.0046 10 6 1.3173 6.0223 0.0052 11 1 1.1092 4.9523 0.0042 12 6 0.7150 6.6527 -1.2239 13 1 1.3481 7.1628 -1.9346 14 6 -0.6446 6.5784 -1.4411 15 7 -1.4158 5.9576 -0.5753 16 14 -1.3911 7.3593 -2.9650 17 1 -0.3177 7.9908 -3.7740 18 1 -2.0707 6.3155 -3.7738 19 1 -2.3783 8.3917 -2.5591 20 6 0.7073 6.6587 1.2558 21 6 1.2249 5.9350 2.5004 22 6 5.0411 5.4071 0.0014 23 6 5.8373 4.3160 -0.0012 24 6 7.3368 4.4671 -0.0019 25 6 7.6996 5.9535 0.0000 26 6 7.9173 3.7983 1.2457 27 6 7.9156 3.8030 -1.2529 28 7 5.2685 3.0748 -0.0011 29 1 5.8384 2.2898 -0.0027 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 -2.3724 5.9056 -0.7280 36 1 0.9901 7.7103 1.3030 37 1 -0.3787 6.5761 1.2127 38 1 0.7908 6.3887 3.3914 39 1 0.9421 4.8834 2.4531 40 1 2.3109 6.0176 2.5435 41 1 5.4632 6.4012 0.0065 42 1 7.2872 6.4269 0.8910 43 1 8.7841 6.0627 -0.0009 44 1 7.2860 6.4296 -0.8890 45 1 7.6588 2.7393 1.2438 46 1 9.0018 3.9071 1.2450 47 1 7.5049 4.2714 2.1367 48 1 7.5020 4.2794 -2.1417 49 1 9.0001 3.9118 -1.2532 50 1 7.6571 2.7440 -1.2546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342832923.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:02 Heat of formation + Delta-G solvation = -30.869074 kcal Electronic energy + Delta-G solvation = -30201.530168 eV Core-core repulsion = 26229.570945 eV Total energy + Delta-G solvation = -3971.959223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.17711 -40.01057 -37.33454 -36.82562 -35.62035 -33.53004 -32.23382 -31.51501 -31.22788 -29.77006 -27.65672 -27.54902 -26.58957 -25.61942 -23.76347 -23.00965 -22.37964 -21.04314 -20.01590 -19.17741 -18.43840 -17.77144 -16.85478 -16.72869 -16.59315 -15.94898 -15.30468 -15.02151 -14.55311 -14.34094 -14.10923 -13.97525 -13.74529 -13.70082 -13.12866 -12.92616 -12.78989 -12.57331 -12.39028 -12.24446 -11.96701 -11.92866 -11.89841 -11.59901 -11.52384 -11.40415 -11.14440 -11.08866 -11.06243 -10.95871 -10.78356 -10.59088 -10.57466 -10.12455 -9.88465 -9.77782 -9.58652 -9.53040 -8.99162 -8.46191 -7.81319 -6.82367 -5.87854 -3.92797 0.83732 1.79861 2.01325 2.58794 3.35609 3.36019 3.42690 3.48875 4.14420 4.18869 4.30095 4.52602 4.54757 4.71560 4.90774 4.92598 4.93077 5.10319 5.20738 5.31762 5.38391 5.41618 5.45273 5.49811 5.58005 5.60460 5.64321 5.64809 5.80480 5.83329 5.89540 6.00228 6.02414 6.05731 6.15299 6.30437 6.36850 6.42331 6.59637 6.66161 6.90830 7.08653 7.22620 7.37030 7.48129 7.52894 7.83004 8.02286 8.19034 8.34674 8.55208 8.97779 9.22265 9.70084 11.16812 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008446 B = 0.004483 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.303490 B = 6244.704291 C = 8234.618315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.063 3.937 3 O -0.311 6.311 4 C 0.538 3.462 5 O -0.508 6.508 6 C 0.356 3.644 7 N -0.449 5.449 8 C 0.278 3.722 9 N -0.458 5.458 10 C 0.193 3.807 11 H 0.042 0.958 12 C -0.494 4.494 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.889 5.889 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.104 4.104 21 C -0.142 4.142 22 C -0.175 4.175 23 C 0.129 3.871 24 C -0.022 4.022 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.144 4.144 28 N -0.626 5.626 29 H 0.414 0.586 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.259 0.741 36 H 0.036 0.964 37 H 0.098 0.902 38 H 0.031 0.969 39 H 0.042 0.958 40 H 0.032 0.968 41 H 0.151 0.849 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.471 -10.956 3.086 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.011 4.011 3 O -0.224 6.224 4 C 0.379 3.621 5 O -0.394 6.394 6 C 0.077 3.923 7 N -0.177 5.177 8 C 0.000 4.000 9 N -0.176 5.176 10 C 0.084 3.916 11 H 0.060 0.940 12 C -0.533 4.533 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.143 4.143 21 C -0.199 4.199 22 C -0.205 4.205 23 C 0.024 3.976 24 C -0.023 4.023 25 C -0.200 4.200 26 C -0.201 4.201 27 C -0.201 4.201 28 N -0.253 5.253 29 H 0.250 0.750 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.117 0.883 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.169 0.831 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.275 -10.047 3.117 18.547 hybrid contribution 0.205 -0.740 -0.839 1.137 sum 15.480 -10.787 2.279 19.005 Atomic orbital electron populations 1.21813 0.91902 1.02704 1.04735 1.23202 0.96129 0.79287 1.02482 1.86775 1.21266 1.32386 1.81978 1.20390 0.81971 0.87031 0.72732 1.90821 1.60835 1.41390 1.46403 1.20491 0.80948 0.92444 0.98465 1.69416 1.34564 1.00027 1.13647 1.21067 0.92046 0.85408 1.01506 1.73168 1.09488 1.26888 1.08013 1.19476 0.80243 0.97735 0.94133 0.94009 1.21069 0.92064 1.34734 1.05388 0.92514 1.24889 0.96934 0.95573 0.96684 1.69913 1.04638 1.43116 1.35227 0.86476 0.79067 0.78973 0.83107 1.19887 1.21125 1.21007 1.21542 1.03540 0.97190 0.92012 1.21782 0.99260 1.00248 0.98626 1.22151 0.91463 0.98359 1.08558 1.19968 0.94067 0.83528 1.00040 1.19593 0.87798 0.98034 0.96828 1.21948 1.01611 0.93097 1.03368 1.21915 1.01116 1.00303 0.96733 1.21921 1.01116 1.00343 0.96741 1.41323 1.04966 1.08604 1.70390 0.74960 0.90916 0.90821 0.90239 0.90979 0.91004 0.93150 0.94560 0.88345 0.94964 0.93905 0.94867 0.83104 0.91418 0.91752 0.91365 0.92588 0.91531 0.91794 0.91737 0.91529 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.29 37.16 0.38 -1.33 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.31 -5.16 10.01 -40.29 -0.40 -5.56 16 4 C 0.54 8.58 8.00 35.04 0.28 8.86 16 5 O -0.51 -7.62 16.16 -19.15 -0.31 -7.93 16 6 C 0.36 6.05 7.67 -155.28 -1.19 4.86 16 7 N -0.45 -9.56 8.55 -8.93 -0.08 -9.63 16 8 C 0.28 6.04 7.60 -155.83 -1.18 4.86 16 9 N -0.46 -11.57 9.65 -53.83 -0.52 -12.09 16 10 C 0.19 5.38 2.30 -69.08 -0.16 5.22 16 11 H 0.04 1.27 6.70 -51.93 -0.35 0.92 16 12 C -0.49 -14.77 8.84 -34.44 -0.30 -15.08 16 13 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 15 N -0.89 -26.29 11.29 55.43 0.63 -25.66 16 16 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 17 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 C -0.10 -2.75 5.45 -26.73 -0.15 -2.90 16 21 C -0.14 -3.23 9.80 37.16 0.36 -2.86 16 22 C -0.18 -2.90 9.22 -37.23 -0.34 -3.24 16 23 C 0.13 1.67 5.46 -81.62 -0.45 1.23 16 24 C -0.02 -0.19 0.88 -155.66 -0.14 -0.33 16 25 C -0.14 -1.20 7.14 37.16 0.27 -0.93 16 26 C -0.14 -1.09 8.38 37.16 0.31 -0.77 16 27 C -0.14 -1.12 8.38 37.16 0.31 -0.81 16 28 N -0.63 -8.35 5.11 -6.88 -0.04 -8.39 16 29 H 0.41 4.47 6.97 -40.82 -0.28 4.18 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 2.81 5.95 -51.93 -0.31 2.50 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.03 0.73 7.75 -51.93 -0.40 0.33 16 41 H 0.15 2.27 5.95 -52.48 -0.31 1.96 16 42 H 0.07 0.60 7.53 -51.93 -0.39 0.21 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.62 7.54 -51.93 -0.39 0.23 16 45 H 0.06 0.40 7.59 -51.93 -0.39 0.01 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 0.42 7.60 -51.93 -0.39 0.02 16 LS Contribution 408.08 15.07 6.15 6.15 Total: -1.00 -34.31 408.08 -9.72 -44.02 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.27 Total: 2.33 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.86 Total: -0.59 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.01 Total: -55.77 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.71 Total: -13.49 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.31 -9.72 -44.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342832923.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.155 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds