Wall clock time and date at job start Tue Mar 31 2020 18:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.46926 * 2 1 4 4 C 1.34623 * 117.00070 * 180.02562 * 3 2 1 5 5 O 1.21349 * 119.99748 * 359.97438 * 4 3 2 6 6 C 1.48675 * 120.00105 * 180.02562 * 4 3 2 7 7 N 1.30693 * 119.02919 * 0.02562 * 6 4 3 8 8 C 1.35303 * 120.56886 * 179.97438 * 7 6 4 9 9 N 1.31852 * 120.59581 * 180.02562 * 8 7 6 10 10 C 1.46493 * 119.99959 * 359.97438 * 9 8 7 11 11 H 1.08997 * 109.47814 * 0.02562 * 10 9 8 12 12 C 1.50696 * 109.47151 * 239.99700 * 10 9 8 13 13 H 1.07993 * 120.00297 * 0.02562 * 12 10 9 14 14 C 1.37881 * 120.00031 * 180.02562 * 12 10 9 15 15 N 1.31520 * 119.99847 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99990 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47166 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47306 * 120.00275 * 16 14 12 19 19 H 1.48501 * 109.47058 * 239.99945 * 16 14 12 20 20 C 1.53008 * 109.46812 * 120.00193 * 10 9 8 21 21 C 1.52995 * 109.46946 * 294.99798 * 20 10 9 22 22 C 1.46846 * 118.80314 * 0.02562 * 8 7 6 23 23 C 1.35064 * 118.24684 * 0.02562 * 22 8 7 24 24 C 1.50707 * 120.36786 * 180.02562 * 23 22 8 25 25 C 1.53004 * 109.46982 * 359.97438 * 24 23 22 26 26 C 1.52996 * 109.47156 * 119.99774 * 24 23 22 27 27 C 1.53003 * 109.46789 * 240.00162 * 24 23 22 28 28 N 1.36067 * 119.02920 * 180.02562 * 6 4 3 29 29 H 0.97004 * 119.41544 * 0.03218 * 28 6 4 30 30 H 1.08994 * 109.47635 * 299.99727 * 1 2 3 31 31 H 1.08997 * 109.47103 * 60.00341 * 1 2 3 32 32 H 1.09003 * 109.46920 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47036 * 240.00270 * 2 1 3 34 34 H 1.09003 * 109.47331 * 120.00046 * 2 1 3 35 35 H 0.97003 * 119.99304 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47269 * 55.00035 * 20 10 9 37 37 H 1.09001 * 109.47156 * 174.99876 * 20 10 9 38 38 H 1.09000 * 109.47069 * 179.97438 * 21 20 10 39 39 H 1.09000 * 109.47330 * 300.00200 * 21 20 10 40 40 H 1.09001 * 109.47130 * 60.00062 * 21 20 10 41 41 H 1.08004 * 120.87750 * 180.26742 * 22 8 7 42 42 H 1.08999 * 109.46664 * 60.00433 * 25 24 23 43 43 H 1.08996 * 109.46732 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.47200 * 300.00255 * 25 24 23 45 45 H 1.09007 * 109.46871 * 59.99960 * 26 24 23 46 46 H 1.08996 * 109.47263 * 179.97438 * 26 24 23 47 47 H 1.08997 * 109.46798 * 300.00159 * 26 24 23 48 48 H 1.09001 * 109.47515 * 59.99670 * 27 24 23 49 49 H 1.08996 * 109.46932 * 180.02562 * 27 24 23 50 50 H 1.09007 * 109.46609 * 299.99656 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3486 1.5455 -0.0005 5 8 4.0878 0.5831 -0.0005 6 6 3.9168 2.9194 0.0000 7 7 3.1032 3.9422 0.0015 8 6 3.5865 5.2059 0.0026 9 7 2.7662 6.2381 0.0046 10 6 1.3173 6.0223 0.0052 11 1 1.1092 4.9523 0.0042 12 6 0.7150 6.6527 -1.2239 13 1 1.3481 7.1628 -1.9346 14 6 -0.6446 6.5784 -1.4411 15 7 -1.4158 5.9576 -0.5753 16 14 -1.3911 7.3593 -2.9650 17 1 -0.3177 7.9908 -3.7740 18 1 -2.0707 6.3155 -3.7738 19 1 -2.3783 8.3917 -2.5591 20 6 0.7073 6.6587 1.2558 21 6 1.2249 5.9350 2.5004 22 6 5.0411 5.4071 0.0014 23 6 5.8373 4.3160 -0.0012 24 6 7.3368 4.4671 -0.0019 25 6 7.6996 5.9535 0.0000 26 6 7.9173 3.7983 1.2457 27 6 7.9156 3.8030 -1.2529 28 7 5.2685 3.0748 -0.0011 29 1 5.8384 2.2898 -0.0027 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 -2.3724 5.9056 -0.7280 36 1 0.9901 7.7103 1.3030 37 1 -0.3787 6.5761 1.2127 38 1 0.7908 6.3887 3.3914 39 1 0.9421 4.8834 2.4531 40 1 2.3109 6.0176 2.5435 41 1 5.4632 6.4012 0.0065 42 1 7.2872 6.4269 0.8910 43 1 8.7841 6.0627 -0.0009 44 1 7.2860 6.4296 -0.8890 45 1 7.6588 2.7393 1.2438 46 1 9.0018 3.9071 1.2450 47 1 7.5049 4.2714 2.1367 48 1 7.5020 4.2794 -2.1417 49 1 9.0001 3.9118 -1.2532 50 1 7.6571 2.7440 -1.2546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342832923.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:01 Heat of formation + Delta-G solvation = -51.633022 kcal Electronic energy + Delta-G solvation = -30202.430560 eV Core-core repulsion = 26229.570945 eV Total energy + Delta-G solvation = -3972.859615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.51129 -41.26061 -38.50125 -38.09229 -37.25179 -35.25170 -33.73007 -33.23206 -32.42179 -31.33017 -28.86553 -28.26236 -28.15097 -26.81023 -25.42258 -24.40965 -23.72139 -22.46366 -21.46756 -20.72275 -19.70358 -19.00559 -18.54550 -18.08570 -17.94211 -17.68936 -16.88317 -16.22970 -16.13906 -15.60763 -15.21053 -15.00637 -14.95720 -14.79650 -14.65274 -14.47696 -14.13444 -13.84187 -13.67248 -13.28490 -13.16678 -13.07938 -12.92373 -12.87947 -12.75145 -12.59718 -12.56815 -12.51300 -12.37573 -12.27657 -12.13199 -11.96248 -11.76859 -11.70203 -11.65239 -11.62611 -11.29552 -11.10245 -10.87367 -10.56077 -9.71383 -8.46050 -8.03827 -6.21842 -0.57915 0.48376 0.75127 1.21248 1.36179 1.37201 1.50430 2.10825 2.40756 2.82382 2.84468 3.14341 3.17790 3.66516 3.89131 3.96470 3.97793 3.98939 3.99474 4.25366 4.28251 4.34071 4.47784 4.53091 4.66088 4.68593 4.70963 4.76447 4.79877 4.87751 4.89805 4.94191 5.00972 5.02873 5.06874 5.12622 5.16744 5.27783 5.28593 5.31099 5.37700 5.41112 5.45392 5.59239 5.61042 5.83716 6.05408 6.06529 6.24331 6.35802 6.79086 6.97387 7.30536 7.54793 8.95960 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008446 B = 0.004483 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.303490 B = 6244.704291 C = 8234.618315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.339 6.339 4 C 0.541 3.459 5 O -0.493 6.493 6 C 0.372 3.628 7 N -0.512 5.512 8 C 0.295 3.705 9 N -0.528 5.528 10 C 0.208 3.792 11 H 0.004 0.996 12 C -0.523 4.523 13 H 0.036 0.964 14 C 0.015 3.985 15 N -0.912 5.912 16 Si 0.961 3.039 17 H -0.276 1.276 18 H -0.275 1.275 19 H -0.272 1.272 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.210 4.210 23 C 0.167 3.833 24 C -0.018 4.018 25 C -0.145 4.145 26 C -0.143 4.143 27 C -0.144 4.144 28 N -0.600 5.600 29 H 0.432 0.568 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.263 0.737 36 H 0.024 0.976 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.162 0.838 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.094 0.906 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.526 -13.055 3.012 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.252 6.252 4 C 0.381 3.619 5 O -0.380 6.380 6 C 0.093 3.907 7 N -0.241 5.241 8 C 0.019 3.981 9 N -0.247 5.247 10 C 0.098 3.902 11 H 0.022 0.978 12 C -0.561 4.561 13 H 0.054 0.946 14 C -0.184 4.184 15 N -0.552 5.552 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.200 1.200 19 H -0.197 1.197 20 C -0.139 4.139 21 C -0.179 4.179 22 C -0.241 4.241 23 C 0.060 3.940 24 C -0.019 4.019 25 C -0.202 4.202 26 C -0.200 4.200 27 C -0.201 4.201 28 N -0.226 5.226 29 H 0.273 0.727 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.180 0.820 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.112 0.888 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.373 -12.211 3.051 22.271 hybrid contribution -0.471 -0.414 -0.808 1.023 sum 17.902 -12.625 2.243 22.020 Atomic orbital electron populations 1.21861 0.91414 1.04560 1.03049 1.23582 0.96575 0.77475 1.04164 1.86777 1.21459 1.35248 1.81752 1.20143 0.82155 0.86493 0.73143 1.90821 1.60563 1.40678 1.45891 1.20868 0.81903 0.92546 0.95394 1.69395 1.36310 1.00673 1.17734 1.21714 0.93825 0.85280 0.97300 1.73119 1.07494 1.28027 1.16025 1.19009 0.82827 0.94794 0.93520 0.97838 1.21337 0.92757 1.35474 1.06581 0.94583 1.25689 0.97076 0.95875 0.99734 1.70036 1.04911 1.43574 1.36634 0.85471 0.78135 0.78412 0.79358 1.20042 1.20034 1.19692 1.21382 1.01780 0.96862 0.93846 1.21554 0.99263 0.99211 0.97918 1.22159 0.89176 1.00305 1.12414 1.20725 0.96250 0.82105 0.94887 1.19824 0.84059 0.99224 0.98797 1.21989 1.03381 0.92229 1.02624 1.21950 1.02750 1.00261 0.95018 1.21961 1.02790 1.00300 0.95054 1.41538 1.04204 1.09866 1.66963 0.72717 0.92314 0.92756 0.86538 0.89396 0.89053 0.92804 0.95717 0.91035 0.92356 0.94911 0.94705 0.82020 0.92092 0.88933 0.92394 0.91888 0.88807 0.92605 0.92890 0.88755 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 10.29 71.98 0.74 -2.56 16 2 C 0.05 1.26 6.19 71.98 0.45 1.71 16 3 O -0.34 -11.32 10.01 -55.31 -0.55 -11.87 16 4 C 0.54 16.73 8.00 70.61 0.56 17.30 16 5 O -0.49 -13.53 16.16 20.32 0.33 -13.20 16 6 C 0.37 12.53 7.67 137.12 1.05 13.58 16 7 N -0.51 -22.73 8.55 -182.18 -1.56 -24.29 16 8 C 0.30 13.50 7.60 136.49 1.04 14.53 16 9 N -0.53 -28.51 9.65 -324.21 -3.13 -31.64 16 10 C 0.21 12.47 2.30 44.25 0.10 12.57 16 11 H 0.00 0.25 6.70 -2.39 -0.02 0.23 16 12 C -0.52 -33.36 8.84 25.60 0.23 -33.13 16 13 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 14 C 0.01 0.91 5.29 84.65 0.45 1.36 16 15 N -0.91 -56.36 11.29 21.45 0.24 -56.12 16 16 Si 0.96 47.54 29.54 68.60 2.03 49.57 16 17 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 18 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 20 C -0.10 -5.63 5.45 30.60 0.17 -5.47 16 21 C -0.12 -5.80 9.80 71.98 0.71 -5.09 16 22 C -0.21 -7.02 9.22 23.79 0.22 -6.81 16 23 C 0.17 4.04 5.46 41.10 0.22 4.27 16 24 C -0.02 -0.26 0.88 -52.92 -0.05 -0.31 16 25 C -0.14 -2.03 7.14 71.98 0.51 -1.52 16 26 C -0.14 -1.54 8.38 71.98 0.60 -0.93 16 27 C -0.14 -1.65 8.38 71.98 0.60 -1.04 16 28 N -0.60 -14.77 5.11 -175.69 -0.90 -15.67 16 29 H 0.43 7.76 6.97 -92.71 -0.65 7.12 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 4.35 5.95 -2.39 -0.01 4.33 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.03 1.60 7.75 -2.39 -0.02 1.58 16 41 H 0.16 4.98 5.95 -2.91 -0.02 4.96 16 42 H 0.06 0.96 7.53 -2.39 -0.02 0.94 16 43 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.95 7.54 -2.39 -0.02 0.94 16 45 H 0.06 0.61 7.59 -2.38 -0.02 0.59 16 46 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.65 7.60 -2.38 -0.02 0.63 16 Total: -1.00 -81.79 408.08 4.36 -77.43 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.29 Total: 17.34 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 7.61 Total: 8.45 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -5.34 Total: -127.71 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.23 Total: -25.07 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -81.79 4.36 -77.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342832923.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.797 kcal (2) G-P(sol) polarization free energy of solvation -81.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds