Wall clock time and date at job start Tue Mar 31 2020 18:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47112 * 2 1 4 4 H 1.09000 * 109.47687 * 54.72645 * 3 2 1 5 5 O 1.42899 * 109.47274 * 294.72602 * 3 2 1 6 6 C 1.42900 * 113.99993 * 151.03580 * 5 3 2 7 7 C 1.54267 * 110.03370 * 270.02688 * 6 5 3 8 8 C 1.54890 * 104.20008 * 217.10589 * 7 6 5 9 9 C 1.54887 * 102.74492 * 37.94445 * 8 7 6 10 10 C 1.53878 * 110.03126 * 152.86716 * 6 5 3 11 11 C 1.50702 * 109.47177 * 174.72860 * 3 2 1 12 12 O 1.21292 * 120.00156 * 114.99427 * 11 3 2 13 13 N 1.34772 * 120.00066 * 295.00234 * 11 3 2 14 14 C 1.40163 * 120.00215 * 179.97438 * 13 11 3 15 15 C 1.40410 * 125.96920 * 0.31000 * 14 13 11 16 16 C 1.35245 * 107.86340 * 180.12805 * 15 14 13 17 17 C 1.50695 * 126.06690 * 179.84689 * 16 15 14 18 18 N 1.34973 * 107.85844 * 359.58933 * 16 15 14 19 19 C 1.46498 * 125.96984 * 180.22206 * 18 16 15 20 20 C 1.50705 * 109.46999 * 90.00095 * 19 18 16 21 21 H 1.07998 * 119.99868 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00054 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99841 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00067 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46881 * 90.00346 * 24 22 20 26 26 H 1.48494 * 109.47246 * 210.00308 * 24 22 20 27 27 H 1.48497 * 109.47186 * 330.00540 * 24 22 20 28 28 N 1.31219 * 125.97393 * 179.97438 * 14 13 11 29 29 H 1.08999 * 109.46684 * 65.28692 * 1 2 3 30 30 H 1.08999 * 109.47225 * 185.28263 * 1 2 3 31 31 H 1.09001 * 109.46847 * 305.28497 * 1 2 3 32 32 H 1.08997 * 109.46984 * 239.99678 * 2 1 3 33 33 H 1.08997 * 109.46789 * 119.99704 * 2 1 3 34 34 H 1.08997 * 110.01620 * 31.47655 * 6 5 3 35 35 H 1.09000 * 110.48866 * 335.79039 * 7 6 5 36 36 H 1.09008 * 110.48100 * 98.43076 * 7 6 5 37 37 H 1.09005 * 110.75644 * 279.63274 * 8 7 6 38 38 H 1.08997 * 110.75572 * 156.25678 * 8 7 6 39 39 H 1.09001 * 110.48362 * 203.38044 * 9 8 7 40 40 H 1.09000 * 110.59965 * 80.79600 * 9 8 7 41 41 H 1.09000 * 110.02913 * 238.56920 * 10 6 5 42 42 H 1.09002 * 110.03380 * 359.97438 * 10 6 5 43 43 H 0.97000 * 120.00164 * 359.97438 * 13 11 3 44 44 H 1.07997 * 126.07000 * 0.02562 * 15 14 13 45 45 H 1.09002 * 109.47379 * 269.69472 * 17 16 15 46 46 H 1.08997 * 109.47151 * 149.69530 * 17 16 15 47 47 H 1.08999 * 109.47369 * 29.69738 * 17 16 15 48 48 H 1.08996 * 109.46986 * 209.99718 * 19 18 16 49 49 H 1.09002 * 109.47317 * 330.00156 * 19 18 16 50 50 H 0.97001 * 119.99713 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6017 1.9829 0.8390 5 8 1.6675 2.0794 -1.2237 6 6 1.4837 3.4920 -1.1112 7 6 0.0172 3.8071 -0.7510 8 6 -0.2999 5.0989 -1.5447 9 6 0.4499 4.8717 -2.8809 10 6 1.7588 4.1689 -2.4655 11 6 3.5414 1.4445 0.1305 12 8 4.2287 1.8597 -0.7785 13 7 4.1205 0.9847 1.2573 14 6 5.5168 0.9860 1.3785 15 6 6.4281 1.4408 0.4120 16 6 7.6757 1.2715 0.9059 17 6 8.9627 1.6211 0.2042 18 7 7.5632 0.7392 2.1411 19 6 8.6722 0.3988 3.0357 20 6 9.0030 1.5877 3.9006 21 1 8.4433 2.5053 3.7943 22 6 10.0201 1.5042 4.8278 23 7 10.7019 0.3870 4.9569 24 14 10.4305 2.9781 5.8994 25 1 9.6253 2.9233 7.1460 26 1 11.8752 2.9542 6.2419 27 1 10.1172 4.2286 5.1623 28 7 6.2007 0.5683 2.4176 29 1 -0.3633 0.4296 -0.9336 30 1 -0.3633 -1.0233 0.0946 31 1 -0.3633 0.5936 0.8389 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.1511 3.8956 -0.3497 35 1 -0.6366 2.9945 -1.0679 36 1 -0.0832 3.9832 0.3200 37 1 0.0898 5.9756 -1.0274 38 1 -1.3723 5.1942 -1.7149 39 1 0.6653 5.8246 -3.3642 40 1 -0.1329 4.2319 -3.5437 41 1 2.5590 4.9016 -2.3609 42 1 2.0329 3.4199 -3.2084 43 1 3.5709 0.6528 1.9845 44 1 6.1774 1.8512 -0.5550 45 1 9.3095 0.7610 -0.3687 46 1 9.7167 1.8937 0.9426 47 1 8.7929 2.4614 -0.4689 48 1 8.3845 -0.4414 3.6676 49 1 9.5459 0.1258 2.4438 50 1 11.4172 0.3281 5.6095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348825092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:17 Heat of formation + Delta-G solvation = -25.973356 kcal Electronic energy + Delta-G solvation = -29189.011866 eV Core-core repulsion = 25217.264937 eV Total energy + Delta-G solvation = -3971.746929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.84374 -39.95716 -38.59210 -36.38159 -34.88612 -33.67644 -33.19226 -31.41941 -30.85493 -28.97857 -28.41315 -27.37791 -26.41984 -26.21790 -23.21939 -22.40015 -21.33887 -20.90977 -20.54880 -19.79669 -19.23791 -17.42390 -17.05848 -16.68772 -16.15994 -16.07393 -15.34925 -15.10563 -15.04272 -14.58318 -14.41207 -14.17485 -14.12135 -13.78079 -13.59294 -13.04821 -12.80753 -12.57751 -12.49268 -12.33634 -12.21687 -12.12625 -11.97978 -11.65216 -11.43424 -11.42165 -11.36287 -11.33867 -11.16590 -11.08002 -10.89375 -10.85405 -10.73804 -10.44696 -10.34108 -10.21922 -9.84631 -9.53826 -9.20814 -8.65980 -7.94681 -7.46749 -6.27104 -4.34901 2.28170 2.68818 2.88271 3.20299 3.26576 3.31152 3.39824 3.69852 3.84194 4.28176 4.29471 4.33006 4.52253 4.58602 4.67331 4.70861 4.94415 5.04902 5.06469 5.16819 5.20132 5.26277 5.36001 5.38964 5.44432 5.49144 5.57310 5.61776 5.67678 5.70808 5.74108 5.80297 5.90573 5.93534 5.97701 6.02534 6.05917 6.09276 6.23597 6.46491 6.54230 6.69369 6.92163 6.98120 7.03847 7.43748 7.64058 7.66220 7.87333 8.04208 8.24915 8.63905 8.73725 9.31534 10.80115 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.002376 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.756810 B =11780.029042 C =12176.897035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.082 3.918 4 H 0.088 0.912 5 O -0.342 6.342 6 C 0.084 3.916 7 C -0.149 4.149 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.119 4.119 11 C 0.491 3.509 12 O -0.499 6.499 13 N -0.630 5.630 14 C 0.263 3.737 15 C -0.290 4.290 16 C 0.092 3.908 17 C -0.089 4.089 18 N -0.317 5.317 19 C 0.258 3.742 20 C -0.536 4.536 21 H 0.064 0.936 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.272 1.272 28 N -0.321 5.321 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.409 0.591 44 H 0.158 0.842 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.052 0.948 49 H 0.054 0.946 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.106 4.118 -12.401 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.020 3.980 4 H 0.105 0.895 5 O -0.260 6.260 6 C 0.026 3.974 7 C -0.187 4.187 8 C -0.161 4.161 9 C -0.161 4.161 10 C -0.157 4.157 11 C 0.276 3.724 12 O -0.371 6.371 13 N -0.280 5.280 14 C 0.010 3.990 15 C -0.321 4.321 16 C -0.040 4.040 17 C -0.147 4.147 18 N -0.099 5.099 19 C 0.141 3.859 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.197 1.197 28 N -0.151 5.151 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.244 0.756 44 H 0.176 0.824 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.473 3.709 -11.926 23.982 hybrid contribution 0.185 0.994 0.729 1.246 sum -20.288 4.703 -11.197 23.645 Atomic orbital electron populations 1.21723 0.94285 1.01984 1.02477 1.21612 0.97366 0.92671 1.03923 1.22038 0.89640 0.96624 0.89688 0.89459 1.88065 1.87663 1.20225 1.30001 1.22890 0.95211 0.80947 0.98365 1.22956 0.96975 0.98609 1.00129 1.22430 1.00234 0.97356 0.96089 1.22348 0.96182 1.00311 0.97238 1.22157 0.97735 0.99464 0.96342 1.21475 0.91370 0.77912 0.81664 1.90656 1.63930 1.43984 1.38538 1.42573 1.03494 1.62988 1.18923 1.19013 0.83766 1.01705 0.94512 1.21243 0.89414 1.17780 1.03656 1.21069 0.96968 0.98466 0.87482 1.20376 0.92835 1.01592 0.99897 1.48994 1.03892 1.45092 1.11936 1.19689 0.80112 0.97884 0.88232 1.21323 1.17775 0.98483 1.19914 0.91772 1.24932 0.95440 0.96647 0.96771 1.69922 1.21935 1.25726 1.35338 0.86354 0.77566 0.82262 0.80506 1.20342 1.20851 1.19654 1.77247 0.88610 1.28399 1.20874 0.91773 0.92206 0.92672 0.90112 0.89975 0.91834 0.90288 0.91581 0.91382 0.91381 0.91529 0.91429 0.90903 0.90079 0.75620 0.82443 0.91063 0.89895 0.90642 0.93001 0.92787 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.76 37.16 0.36 -0.65 16 2 C -0.12 -1.02 5.61 -26.73 -0.15 -1.17 16 3 C 0.08 0.87 2.34 -27.89 -0.07 0.80 16 4 H 0.09 0.73 7.84 -51.93 -0.41 0.33 16 5 O -0.34 -3.97 8.73 -55.09 -0.48 -4.45 16 6 C 0.08 0.85 3.14 -25.61 -0.08 0.77 16 7 C -0.15 -1.16 6.54 -25.07 -0.16 -1.32 16 8 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16 9 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 10 C -0.12 -1.16 6.61 -25.61 -0.17 -1.33 16 11 C 0.49 7.23 7.05 -10.99 -0.08 7.15 16 12 O -0.50 -9.12 13.64 -14.31 -0.20 -9.32 16 13 N -0.63 -9.74 5.35 -11.13 -0.06 -9.80 16 14 C 0.26 5.37 8.11 -154.38 -1.25 4.12 16 15 C -0.29 -6.06 9.52 -39.83 -0.38 -6.44 16 16 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 17 C -0.09 -1.54 9.89 36.00 0.36 -1.18 16 18 N -0.32 -7.56 3.59 -58.33 -0.21 -7.77 16 19 C 0.26 6.64 5.81 -5.19 -0.03 6.61 16 20 C -0.54 -14.77 9.39 -34.44 -0.32 -15.09 16 21 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 24 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 N -0.32 -7.41 12.59 31.44 0.40 -7.02 16 29 H 0.06 0.48 7.97 -51.93 -0.41 0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.61 7.76 -51.93 -0.40 0.21 16 34 H 0.06 0.71 7.83 -51.93 -0.41 0.30 16 35 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 43 H 0.41 4.99 8.53 -40.82 -0.35 4.65 16 44 H 0.16 3.24 5.92 -52.49 -0.31 2.93 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 49 H 0.05 1.37 7.65 -51.93 -0.40 0.98 16 50 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 408.98 15.07 6.16 6.16 Total: -1.00 -32.53 408.98 -10.19 -42.72 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.54 Total: 4.48 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.98 Total: -6.78 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.86 Total: -48.84 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.68 Total: -13.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.53 -10.19 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348825092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.743 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds