Wall clock time and date at job start Tue Mar 31 2020 18:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47112 * 2 1 4 4 H 1.09000 * 109.47687 * 54.72645 * 3 2 1 5 5 O 1.42899 * 109.47274 * 294.72602 * 3 2 1 6 6 C 1.42900 * 113.99993 * 151.03580 * 5 3 2 7 7 C 1.54267 * 110.03370 * 270.02688 * 6 5 3 8 8 C 1.54890 * 104.20008 * 217.10589 * 7 6 5 9 9 C 1.54887 * 102.74492 * 37.94445 * 8 7 6 10 10 C 1.53878 * 110.03126 * 152.86716 * 6 5 3 11 11 C 1.50702 * 109.47177 * 174.72860 * 3 2 1 12 12 O 1.21292 * 120.00156 * 114.99427 * 11 3 2 13 13 N 1.34772 * 120.00066 * 295.00234 * 11 3 2 14 14 C 1.40163 * 120.00215 * 179.97438 * 13 11 3 15 15 C 1.40410 * 125.96920 * 0.31000 * 14 13 11 16 16 C 1.35245 * 107.86340 * 180.12805 * 15 14 13 17 17 C 1.50695 * 126.06690 * 179.84689 * 16 15 14 18 18 N 1.34973 * 107.85844 * 359.58933 * 16 15 14 19 19 C 1.46498 * 125.96984 * 180.22206 * 18 16 15 20 20 C 1.50705 * 109.46999 * 90.00095 * 19 18 16 21 21 H 1.07998 * 119.99868 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00054 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99841 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00067 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46881 * 90.00346 * 24 22 20 26 26 H 1.48494 * 109.47246 * 210.00308 * 24 22 20 27 27 H 1.48497 * 109.47186 * 330.00540 * 24 22 20 28 28 N 1.31219 * 125.97393 * 179.97438 * 14 13 11 29 29 H 1.08999 * 109.46684 * 65.28692 * 1 2 3 30 30 H 1.08999 * 109.47225 * 185.28263 * 1 2 3 31 31 H 1.09001 * 109.46847 * 305.28497 * 1 2 3 32 32 H 1.08997 * 109.46984 * 239.99678 * 2 1 3 33 33 H 1.08997 * 109.46789 * 119.99704 * 2 1 3 34 34 H 1.08997 * 110.01620 * 31.47655 * 6 5 3 35 35 H 1.09000 * 110.48866 * 335.79039 * 7 6 5 36 36 H 1.09008 * 110.48100 * 98.43076 * 7 6 5 37 37 H 1.09005 * 110.75644 * 279.63274 * 8 7 6 38 38 H 1.08997 * 110.75572 * 156.25678 * 8 7 6 39 39 H 1.09001 * 110.48362 * 203.38044 * 9 8 7 40 40 H 1.09000 * 110.59965 * 80.79600 * 9 8 7 41 41 H 1.09000 * 110.02913 * 238.56920 * 10 6 5 42 42 H 1.09002 * 110.03380 * 359.97438 * 10 6 5 43 43 H 0.97000 * 120.00164 * 359.97438 * 13 11 3 44 44 H 1.07997 * 126.07000 * 0.02562 * 15 14 13 45 45 H 1.09002 * 109.47379 * 269.69472 * 17 16 15 46 46 H 1.08997 * 109.47151 * 149.69530 * 17 16 15 47 47 H 1.08999 * 109.47369 * 29.69738 * 17 16 15 48 48 H 1.08996 * 109.46986 * 209.99718 * 19 18 16 49 49 H 1.09002 * 109.47317 * 330.00156 * 19 18 16 50 50 H 0.97001 * 119.99713 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6017 1.9829 0.8390 5 8 1.6675 2.0794 -1.2237 6 6 1.4837 3.4920 -1.1112 7 6 0.0172 3.8071 -0.7510 8 6 -0.2999 5.0989 -1.5447 9 6 0.4499 4.8717 -2.8809 10 6 1.7588 4.1689 -2.4655 11 6 3.5414 1.4445 0.1305 12 8 4.2287 1.8597 -0.7785 13 7 4.1205 0.9847 1.2573 14 6 5.5168 0.9860 1.3785 15 6 6.4281 1.4408 0.4120 16 6 7.6757 1.2715 0.9059 17 6 8.9627 1.6211 0.2042 18 7 7.5632 0.7392 2.1411 19 6 8.6722 0.3988 3.0357 20 6 9.0030 1.5877 3.9006 21 1 8.4433 2.5053 3.7943 22 6 10.0201 1.5042 4.8278 23 7 10.7019 0.3870 4.9569 24 14 10.4305 2.9781 5.8994 25 1 9.6253 2.9233 7.1460 26 1 11.8752 2.9542 6.2419 27 1 10.1172 4.2286 5.1623 28 7 6.2007 0.5683 2.4176 29 1 -0.3633 0.4296 -0.9336 30 1 -0.3633 -1.0233 0.0946 31 1 -0.3633 0.5936 0.8389 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.1511 3.8956 -0.3497 35 1 -0.6366 2.9945 -1.0679 36 1 -0.0832 3.9832 0.3200 37 1 0.0898 5.9756 -1.0274 38 1 -1.3723 5.1942 -1.7149 39 1 0.6653 5.8246 -3.3642 40 1 -0.1329 4.2319 -3.5437 41 1 2.5590 4.9016 -2.3609 42 1 2.0329 3.4199 -3.2084 43 1 3.5709 0.6528 1.9845 44 1 6.1774 1.8512 -0.5550 45 1 9.3095 0.7610 -0.3687 46 1 9.7167 1.8937 0.9426 47 1 8.7929 2.4614 -0.4689 48 1 8.3845 -0.4414 3.6676 49 1 9.5459 0.1258 2.4438 50 1 11.4172 0.3281 5.6095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348825092.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:17 Heat of formation + Delta-G solvation = -43.646433 kcal Electronic energy + Delta-G solvation = -29189.778228 eV Core-core repulsion = 25217.264937 eV Total energy + Delta-G solvation = -3972.513291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.37280 -41.16372 -39.56598 -37.19337 -36.36536 -35.38039 -34.23744 -32.97102 -32.65311 -29.63430 -29.33935 -28.62372 -27.93341 -27.63773 -25.00731 -23.46037 -22.40744 -21.63055 -21.37812 -21.23774 -20.71546 -18.82754 -18.34687 -18.23906 -17.58129 -17.04448 -16.87413 -16.43275 -16.22459 -15.81164 -15.63333 -15.53526 -14.97547 -14.75784 -14.72021 -14.34277 -14.24258 -13.85490 -13.68260 -13.62175 -13.49812 -13.25421 -13.16618 -12.93250 -12.79324 -12.71095 -12.69638 -12.26901 -12.14465 -12.03319 -12.00053 -11.92819 -11.83944 -11.59724 -11.51098 -11.45789 -11.37245 -11.22441 -10.75313 -10.30746 -9.61924 -9.17998 -8.34376 -6.52146 0.85219 1.27199 1.34352 1.37224 1.38741 1.50057 2.14410 2.21139 2.35653 2.62082 2.95414 3.41877 3.62092 3.67913 3.83142 3.86493 3.93639 4.02375 4.11876 4.26512 4.39179 4.43312 4.52056 4.54302 4.59855 4.71668 4.72654 4.74976 4.80898 4.84813 4.86889 4.94356 4.94910 4.98195 5.04541 5.08995 5.10564 5.12895 5.20880 5.22176 5.26235 5.29723 5.44543 5.48147 5.51949 5.79133 5.89957 6.07298 6.22927 6.29480 6.60015 6.94607 7.07182 7.18906 8.71745 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.002376 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.756810 B =11780.029042 C =12176.897035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.117 0.883 5 O -0.355 6.355 6 C 0.076 3.924 7 C -0.142 4.142 8 C -0.121 4.121 9 C -0.119 4.119 10 C -0.124 4.124 11 C 0.490 3.510 12 O -0.536 6.536 13 N -0.620 5.620 14 C 0.272 3.728 15 C -0.301 4.301 16 C 0.088 3.912 17 C -0.086 4.086 18 N -0.342 5.342 19 C 0.275 3.725 20 C -0.554 4.554 21 H 0.049 0.951 22 C 0.023 3.977 23 N -0.917 5.917 24 Si 0.971 3.029 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.270 1.270 28 N -0.355 5.355 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.425 0.575 44 H 0.162 0.838 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.025 0.975 49 H 0.052 0.948 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.971 5.213 -12.310 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.029 3.971 4 H 0.134 0.866 5 O -0.273 6.273 6 C 0.019 3.981 7 C -0.180 4.180 8 C -0.158 4.158 9 C -0.156 4.156 10 C -0.162 4.162 11 C 0.277 3.723 12 O -0.410 6.410 13 N -0.272 5.272 14 C 0.018 3.982 15 C -0.331 4.331 16 C -0.043 4.043 17 C -0.144 4.144 18 N -0.125 5.125 19 C 0.157 3.843 20 C -0.592 4.592 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.195 1.195 28 N -0.185 5.185 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.263 0.737 44 H 0.180 0.820 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.119 0.881 48 H 0.044 0.956 49 H 0.069 0.931 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.375 4.795 -11.842 25.765 hybrid contribution 0.713 0.639 0.592 1.126 sum -21.661 5.434 -11.249 25.006 Atomic orbital electron populations 1.21692 0.92483 1.02959 1.02782 1.21664 0.98825 0.91016 1.03873 1.22203 0.86151 0.98295 0.90457 0.86551 1.88068 1.87374 1.21021 1.30813 1.23048 0.96773 0.80246 0.98080 1.22914 0.94909 0.99128 1.01001 1.22449 1.01096 0.96976 0.95310 1.22334 0.94944 1.00483 0.97883 1.22191 0.98942 0.99063 0.95987 1.22488 0.93121 0.76176 0.80468 1.90630 1.65203 1.45479 1.39734 1.42719 1.01548 1.62951 1.20004 1.19359 0.85864 0.99598 0.93412 1.21399 0.89531 1.18263 1.03958 1.21736 0.98736 0.97150 0.86642 1.20498 0.90630 1.03478 0.99773 1.48803 1.03886 1.47054 1.12711 1.19254 0.80656 0.96452 0.87968 1.21426 1.18251 0.98441 1.21062 0.93290 1.25735 0.94976 0.99394 0.97700 1.70002 1.22249 1.27386 1.35911 0.85354 0.77882 0.78715 0.78541 1.19919 1.19485 1.19454 1.77171 0.88611 1.30350 1.22408 0.92399 0.91149 0.91197 0.91638 0.88636 0.93174 0.89832 0.90408 0.91146 0.89777 0.90661 0.91066 0.91661 0.91813 0.73701 0.82045 0.88873 0.91301 0.88091 0.95649 0.93063 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.76 71.98 0.70 -0.87 16 2 C -0.12 -1.78 5.61 30.59 0.17 -1.61 16 3 C 0.09 1.77 2.34 29.85 0.07 1.84 16 4 H 0.12 1.63 7.84 -2.39 -0.02 1.62 16 5 O -0.36 -7.92 8.73 -129.99 -1.13 -9.05 16 6 C 0.08 1.48 3.14 31.32 0.10 1.58 16 7 C -0.14 -1.87 6.54 31.67 0.21 -1.67 16 8 C -0.12 -1.39 6.91 31.88 0.22 -1.17 16 9 C -0.12 -1.62 6.83 31.67 0.22 -1.40 16 10 C -0.12 -2.40 6.61 31.32 0.21 -2.20 16 11 C 0.49 14.15 7.05 87.66 0.62 14.76 16 12 O -0.54 -19.72 13.64 15.92 0.22 -19.51 16 13 N -0.62 -18.81 5.35 -307.51 -1.64 -20.45 16 14 C 0.27 11.18 8.11 133.32 1.08 12.27 16 15 C -0.30 -12.66 9.52 22.11 0.21 -12.45 16 16 C 0.09 3.79 6.92 41.38 0.29 4.08 16 17 C -0.09 -2.94 9.89 71.23 0.70 -2.24 16 18 N -0.34 -16.77 3.59 -338.44 -1.22 -17.99 16 19 C 0.28 14.67 5.81 85.64 0.50 15.16 16 20 C -0.55 -31.15 9.39 25.60 0.24 -30.91 16 21 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 22 C 0.02 1.26 5.46 84.65 0.46 1.72 16 23 N -0.92 -51.82 13.29 21.45 0.28 -51.53 16 24 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 28 N -0.35 -16.76 12.59 -54.45 -0.69 -17.44 16 29 H 0.06 0.73 7.97 -2.39 -0.02 0.71 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.21 7.76 -2.39 -0.02 1.19 16 34 H 0.05 1.09 7.83 -2.39 -0.02 1.07 16 35 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 36 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.43 7.95 -2.39 -0.02 1.41 16 43 H 0.42 9.87 8.53 -92.71 -0.79 9.08 16 44 H 0.16 6.68 5.92 -2.91 -0.02 6.66 16 45 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.07 2.56 7.71 -2.39 -0.02 2.54 16 47 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 48 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.05 2.70 7.65 -2.39 -0.02 2.69 16 50 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -71.58 408.98 3.98 -67.60 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.14 Total: 26.42 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.99 Total: -3.10 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -3.26 Total: -107.41 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.92 Total: -28.56 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -71.58 3.98 -67.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348825092.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.953 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds