Wall clock time and date at job start Tue Mar 31 2020 18:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 O 1.42902 * 109.47296 * 65.00043 * 3 2 1 6 6 C 1.42904 * 113.99854 * 270.00526 * 5 3 2 7 7 C 1.54268 * 110.03208 * 267.16031 * 6 5 3 8 8 C 1.54883 * 104.19744 * 217.10936 * 7 6 5 9 9 C 1.54885 * 102.74979 * 37.93988 * 8 7 6 10 10 C 1.53878 * 110.03149 * 149.99696 * 6 5 3 11 11 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 12 12 O 1.21298 * 120.00119 * 245.00592 * 11 3 2 13 13 N 1.34778 * 119.99812 * 64.99627 * 11 3 2 14 14 C 1.40159 * 119.99981 * 180.02562 * 13 11 3 15 15 C 1.40408 * 125.97233 * 359.71565 * 14 13 11 16 16 C 1.35241 * 107.86725 * 179.83121 * 15 14 13 17 17 C 1.50697 * 126.07104 * 180.16168 * 16 15 14 18 18 N 1.34968 * 107.85813 * 0.42820 * 16 15 14 19 19 C 1.46498 * 125.97493 * 179.69370 * 18 16 15 20 20 C 1.50709 * 109.46993 * 270.01811 * 19 18 16 21 21 H 1.07996 * 119.99998 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99786 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00141 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99882 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47219 * 60.00194 * 24 22 20 26 26 H 1.48497 * 109.47365 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47169 * 300.00266 * 24 22 20 28 28 N 1.31221 * 125.97412 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.08990 * 110.01588 * 28.60487 * 6 5 3 35 35 H 1.09010 * 110.48435 * 335.78406 * 7 6 5 36 36 H 1.08998 * 110.48224 * 98.42358 * 7 6 5 37 37 H 1.09002 * 110.75151 * 279.62637 * 8 7 6 38 38 H 1.09002 * 110.91328 * 156.33415 * 8 7 6 39 39 H 1.09003 * 110.48671 * 203.37531 * 9 8 7 40 40 H 1.09005 * 110.48709 * 80.74229 * 9 8 7 41 41 H 1.08995 * 110.02866 * 238.56629 * 10 6 5 42 42 H 1.09000 * 110.03161 * 359.94741 * 10 6 5 43 43 H 0.97003 * 119.99681 * 0.02562 * 13 11 3 44 44 H 1.08001 * 126.06694 * 359.97438 * 15 14 13 45 45 H 1.08998 * 109.47120 * 270.31646 * 17 16 15 46 46 H 1.09000 * 109.47345 * 30.31673 * 17 16 15 47 47 H 1.09002 * 109.47272 * 150.32097 * 17 16 15 48 48 H 1.09006 * 109.47481 * 30.01678 * 19 18 16 49 49 H 1.08999 * 109.47303 * 150.02251 * 19 18 16 50 50 H 0.97001 * 119.99990 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6621 2.0813 1.2210 6 6 0.3928 2.7356 1.1660 7 6 0.5782 4.2168 0.7766 8 6 -0.4850 4.9665 1.6172 9 6 -0.4579 4.2014 2.9636 10 6 -0.2660 2.7258 2.5566 11 6 3.5419 1.4443 -0.1238 12 8 4.2251 1.8610 0.7877 13 7 4.1260 0.9827 -1.2474 14 6 5.5229 0.9839 -1.3624 15 6 6.4299 1.4398 -0.3923 16 6 7.6797 1.2691 -0.8801 17 6 8.9636 1.6190 -0.1729 18 7 7.5727 0.7352 -2.1150 19 6 8.6856 0.3946 -3.0047 20 6 9.0193 1.5829 -3.8694 21 1 8.4583 2.5000 -3.7668 22 6 10.0410 1.4992 -4.7915 23 7 10.7240 0.3823 -4.9168 24 14 10.4542 2.9719 -5.8638 25 1 10.8411 4.1182 -5.0027 26 1 11.5824 2.6267 -6.7655 27 1 9.2672 3.3414 -6.6760 28 7 6.2115 0.5646 -2.3977 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 -0.2530 2.2368 0.4434 35 1 1.5803 4.5572 1.0375 36 1 0.3916 4.3575 -0.2880 37 1 -1.4676 4.8935 1.1511 38 1 -0.2033 6.0097 1.7599 39 1 -1.4007 4.3311 3.4951 40 1 0.3768 4.5394 3.5778 41 1 -1.2319 2.2231 2.5086 42 1 0.3821 2.2213 3.2732 43 1 3.5796 0.6497 -1.9764 44 1 6.1748 1.8513 0.5731 45 1 9.2390 2.6472 -0.4074 46 1 8.8252 1.5165 0.9034 47 1 9.7553 0.9466 -0.5032 48 1 9.5570 0.1226 -2.4089 49 1 8.4010 -0.4464 -3.6371 50 1 11.4425 0.3233 -5.5657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348825093.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:20 Heat of formation + Delta-G solvation = -20.441348 kcal Electronic energy + Delta-G solvation = -29064.259596 eV Core-core repulsion = 25092.752554 eV Total energy + Delta-G solvation = -3971.507043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82835 -39.99615 -38.76119 -36.44677 -34.86947 -33.56963 -33.10281 -31.42245 -30.85459 -29.20039 -28.77872 -27.17911 -26.40056 -26.16040 -23.22070 -22.47766 -21.29738 -21.00547 -20.65826 -19.78250 -19.23659 -17.44011 -17.04584 -16.67797 -16.09737 -15.83799 -15.70317 -15.33828 -15.02392 -14.53439 -14.44051 -14.14111 -13.98956 -13.85300 -13.64897 -13.04930 -12.86057 -12.56059 -12.47217 -12.38258 -12.31596 -12.14639 -12.13416 -11.63689 -11.54618 -11.44338 -11.40072 -11.37610 -11.30806 -11.08932 -10.91828 -10.81275 -10.69059 -10.45987 -10.23919 -9.95068 -9.78258 -9.54372 -9.35823 -8.64112 -7.93849 -7.45798 -6.25632 -4.33253 2.30425 2.51876 2.89986 3.23100 3.26894 3.30863 3.48540 3.70158 3.91749 4.24233 4.26521 4.30129 4.49389 4.51884 4.60040 4.69851 4.86747 4.92872 5.08019 5.10581 5.14459 5.17823 5.30488 5.33535 5.40453 5.44612 5.53893 5.58172 5.61782 5.68799 5.71219 5.72527 5.85233 5.87243 5.91053 5.92580 6.03984 6.12125 6.24547 6.44842 6.54569 6.69282 6.92971 6.98040 7.05325 7.43766 7.65293 7.67501 7.88695 8.05094 8.26284 8.64604 8.74576 9.32912 10.81609 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.002237 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.742447 B =12515.391788 C =12801.935163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.144 4.144 3 C 0.081 3.919 4 H 0.088 0.912 5 O -0.344 6.344 6 C 0.074 3.926 7 C -0.152 4.152 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.123 4.123 11 C 0.518 3.482 12 O -0.493 6.493 13 N -0.630 5.630 14 C 0.265 3.735 15 C -0.290 4.290 16 C 0.092 3.908 17 C -0.084 4.084 18 N -0.316 5.316 19 C 0.259 3.741 20 C -0.536 4.536 21 H 0.063 0.937 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.275 1.275 28 N -0.320 5.320 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.409 0.591 44 H 0.159 0.841 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.052 0.948 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.776 2.875 12.424 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.182 4.182 3 C 0.019 3.981 4 H 0.106 0.894 5 O -0.262 6.262 6 C 0.017 3.983 7 C -0.190 4.190 8 C -0.160 4.160 9 C -0.161 4.161 10 C -0.160 4.160 11 C 0.302 3.698 12 O -0.364 6.364 13 N -0.279 5.279 14 C 0.012 3.988 15 C -0.321 4.321 16 C -0.040 4.040 17 C -0.142 4.142 18 N -0.099 5.099 19 C 0.141 3.859 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.200 1.200 28 N -0.151 5.151 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.244 0.756 44 H 0.176 0.824 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.996 2.549 11.934 25.154 hybrid contribution -0.093 0.877 -0.722 1.139 sum -22.088 3.425 11.212 25.007 Atomic orbital electron populations 1.21949 0.94888 1.02612 1.02109 1.22048 0.97072 0.94979 1.04103 1.21847 0.91438 0.95104 0.89725 0.89439 1.88121 1.36250 1.70463 1.31331 1.23132 0.84841 0.92298 0.98073 1.22965 1.00837 0.95327 0.99862 1.22419 0.98712 0.99238 0.95679 1.22337 1.01823 0.94553 0.97371 1.22210 1.00168 0.97541 0.96100 1.20331 0.89703 0.77953 0.81787 1.90669 1.64056 1.43434 1.38277 1.42380 1.03530 1.63142 1.18849 1.18947 0.83514 1.01744 0.94576 1.21250 0.89400 1.17653 1.03812 1.21069 0.96963 0.98424 0.87523 1.20335 0.92371 1.02651 0.98864 1.48987 1.03898 1.45026 1.11975 1.19688 0.80007 0.97890 0.88302 1.21278 1.17495 0.98520 1.20154 0.91830 1.24926 0.95455 0.96634 0.96767 1.69911 1.21726 1.25709 1.35632 0.86409 0.78019 0.82160 0.80061 1.19926 1.20948 1.20010 1.77252 0.88568 1.28462 1.20820 0.92490 0.91708 0.91875 0.90037 0.90233 0.90796 0.90032 0.91558 0.91510 0.91292 0.91527 0.91199 0.91060 0.90100 0.75579 0.82363 0.90409 0.90792 0.90843 0.92777 0.93007 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 8.58 37.16 0.32 -0.70 16 2 C -0.14 -1.23 5.61 -26.74 -0.15 -1.38 16 3 C 0.08 0.86 2.67 -27.89 -0.07 0.79 16 4 H 0.09 0.74 7.80 -51.93 -0.40 0.34 16 5 O -0.34 -4.07 9.01 -55.09 -0.50 -4.56 16 6 C 0.07 0.64 2.08 -25.61 -0.05 0.58 16 7 C -0.15 -1.31 6.56 -25.07 -0.16 -1.47 16 8 C -0.12 -0.85 6.91 -24.74 -0.17 -1.02 16 9 C -0.12 -0.86 6.83 -25.08 -0.17 -1.03 16 10 C -0.12 -0.93 6.44 -25.61 -0.16 -1.09 16 11 C 0.52 7.81 7.15 -10.98 -0.08 7.73 16 12 O -0.49 -9.36 13.64 -14.32 -0.20 -9.55 16 13 N -0.63 -9.80 5.35 -11.13 -0.06 -9.86 16 14 C 0.26 5.43 8.11 -154.39 -1.25 4.18 16 15 C -0.29 -6.10 9.52 -39.83 -0.38 -6.48 16 16 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 17 C -0.08 -1.46 10.11 36.00 0.36 -1.10 16 18 N -0.32 -7.56 3.59 -58.32 -0.21 -7.77 16 19 C 0.26 6.66 5.99 -5.19 -0.03 6.63 16 20 C -0.54 -14.81 9.39 -34.44 -0.32 -15.13 16 21 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 24 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 N -0.32 -7.42 12.59 31.44 0.40 -7.02 16 29 H 0.06 0.30 8.01 -51.93 -0.42 -0.11 16 30 H 0.06 0.42 5.79 -51.93 -0.30 0.12 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.60 7.77 -51.93 -0.40 0.20 16 34 H 0.07 0.51 5.34 -51.93 -0.28 0.23 16 35 H 0.08 0.87 8.08 -51.92 -0.42 0.46 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.71 7.95 -51.93 -0.41 0.30 16 43 H 0.41 5.00 8.53 -40.82 -0.35 4.65 16 44 H 0.16 3.29 5.92 -52.49 -0.31 2.97 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 48 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 49 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 50 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -33.03 401.62 -10.02 -43.05 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.22 Total: 4.27 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.00 Total: -6.39 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.86 Total: -48.99 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.69 Total: -14.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.03 -10.02 -43.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348825093.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.606 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds