Wall clock time and date at job start Tue Mar 31 2020 18:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 O 1.42902 * 109.47296 * 65.00043 * 3 2 1 6 6 C 1.42904 * 113.99854 * 270.00526 * 5 3 2 7 7 C 1.54268 * 110.03208 * 267.16031 * 6 5 3 8 8 C 1.54883 * 104.19744 * 217.10936 * 7 6 5 9 9 C 1.54885 * 102.74979 * 37.93988 * 8 7 6 10 10 C 1.53878 * 110.03149 * 149.99696 * 6 5 3 11 11 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 12 12 O 1.21298 * 120.00119 * 245.00592 * 11 3 2 13 13 N 1.34778 * 119.99812 * 64.99627 * 11 3 2 14 14 C 1.40159 * 119.99981 * 180.02562 * 13 11 3 15 15 C 1.40408 * 125.97233 * 359.71565 * 14 13 11 16 16 C 1.35241 * 107.86725 * 179.83121 * 15 14 13 17 17 C 1.50697 * 126.07104 * 180.16168 * 16 15 14 18 18 N 1.34968 * 107.85813 * 0.42820 * 16 15 14 19 19 C 1.46498 * 125.97493 * 179.69370 * 18 16 15 20 20 C 1.50709 * 109.46993 * 270.01811 * 19 18 16 21 21 H 1.07996 * 119.99998 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99786 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00141 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99882 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47219 * 60.00194 * 24 22 20 26 26 H 1.48497 * 109.47365 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47169 * 300.00266 * 24 22 20 28 28 N 1.31221 * 125.97412 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.08990 * 110.01588 * 28.60487 * 6 5 3 35 35 H 1.09010 * 110.48435 * 335.78406 * 7 6 5 36 36 H 1.08998 * 110.48224 * 98.42358 * 7 6 5 37 37 H 1.09002 * 110.75151 * 279.62637 * 8 7 6 38 38 H 1.09002 * 110.91328 * 156.33415 * 8 7 6 39 39 H 1.09003 * 110.48671 * 203.37531 * 9 8 7 40 40 H 1.09005 * 110.48709 * 80.74229 * 9 8 7 41 41 H 1.08995 * 110.02866 * 238.56629 * 10 6 5 42 42 H 1.09000 * 110.03161 * 359.94741 * 10 6 5 43 43 H 0.97003 * 119.99681 * 0.02562 * 13 11 3 44 44 H 1.08001 * 126.06694 * 359.97438 * 15 14 13 45 45 H 1.08998 * 109.47120 * 270.31646 * 17 16 15 46 46 H 1.09000 * 109.47345 * 30.31673 * 17 16 15 47 47 H 1.09002 * 109.47272 * 150.32097 * 17 16 15 48 48 H 1.09006 * 109.47481 * 30.01678 * 19 18 16 49 49 H 1.08999 * 109.47303 * 150.02251 * 19 18 16 50 50 H 0.97001 * 119.99990 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6621 2.0813 1.2210 6 6 0.3928 2.7356 1.1660 7 6 0.5782 4.2168 0.7766 8 6 -0.4850 4.9665 1.6172 9 6 -0.4579 4.2014 2.9636 10 6 -0.2660 2.7258 2.5566 11 6 3.5419 1.4443 -0.1238 12 8 4.2251 1.8610 0.7877 13 7 4.1260 0.9827 -1.2474 14 6 5.5229 0.9839 -1.3624 15 6 6.4299 1.4398 -0.3923 16 6 7.6797 1.2691 -0.8801 17 6 8.9636 1.6190 -0.1729 18 7 7.5727 0.7352 -2.1150 19 6 8.6856 0.3946 -3.0047 20 6 9.0193 1.5829 -3.8694 21 1 8.4583 2.5000 -3.7668 22 6 10.0410 1.4992 -4.7915 23 7 10.7240 0.3823 -4.9168 24 14 10.4542 2.9719 -5.8638 25 1 10.8411 4.1182 -5.0027 26 1 11.5824 2.6267 -6.7655 27 1 9.2672 3.3414 -6.6760 28 7 6.2115 0.5646 -2.3977 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 -0.2530 2.2368 0.4434 35 1 1.5803 4.5572 1.0375 36 1 0.3916 4.3575 -0.2880 37 1 -1.4676 4.8935 1.1511 38 1 -0.2033 6.0097 1.7599 39 1 -1.4007 4.3311 3.4951 40 1 0.3768 4.5394 3.5778 41 1 -1.2319 2.2231 2.5086 42 1 0.3821 2.2213 3.2732 43 1 3.5796 0.6497 -1.9764 44 1 6.1748 1.8513 0.5731 45 1 9.2390 2.6472 -0.4074 46 1 8.8252 1.5165 0.9034 47 1 9.7553 0.9466 -0.5032 48 1 9.5570 0.1226 -2.4089 49 1 8.4010 -0.4464 -3.6371 50 1 11.4425 0.3233 -5.5657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348825093.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:19 Heat of formation + Delta-G solvation = -39.004270 kcal Electronic energy + Delta-G solvation = -29065.064545 eV Core-core repulsion = 25092.752554 eV Total energy + Delta-G solvation = -3972.311992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.37129 -41.14190 -39.75441 -37.19926 -36.37626 -35.36610 -34.05428 -32.96456 -32.64919 -29.91754 -29.49191 -28.62725 -27.92417 -27.40102 -25.00295 -23.48836 -22.47952 -21.60351 -21.39834 -21.23133 -20.73718 -18.81895 -18.34035 -18.16560 -17.59086 -17.02069 -16.71865 -16.47909 -16.25167 -16.13737 -15.65487 -15.37822 -15.07303 -14.73534 -14.63698 -14.31998 -14.24725 -13.83956 -13.74652 -13.57323 -13.45290 -13.22759 -13.13122 -13.00597 -12.94347 -12.80207 -12.66848 -12.24852 -12.19884 -12.10868 -12.01956 -11.93289 -11.89766 -11.57511 -11.47394 -11.39359 -11.32785 -10.87424 -10.73695 -10.36598 -9.62216 -9.18072 -8.33497 -6.51057 0.85509 1.19143 1.34118 1.38882 1.39421 1.48944 2.11921 2.14240 2.35043 2.84425 2.96395 3.41045 3.64503 3.67569 3.79917 3.84669 3.95022 4.03196 4.12993 4.27306 4.35924 4.40687 4.48127 4.54698 4.58771 4.69234 4.74017 4.74715 4.76180 4.83977 4.87167 4.94790 4.95406 4.97899 5.03221 5.07793 5.10722 5.11573 5.17530 5.21897 5.24511 5.31022 5.36795 5.47150 5.52654 5.79936 5.88991 6.12089 6.23162 6.33185 6.60373 6.94420 7.06647 7.19682 8.72456 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.002237 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.742447 B =12515.391788 C =12801.935163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.140 4.140 3 C 0.090 3.910 4 H 0.117 0.883 5 O -0.371 6.371 6 C 0.069 3.931 7 C -0.156 4.156 8 C -0.119 4.119 9 C -0.124 4.124 10 C -0.122 4.122 11 C 0.516 3.484 12 O -0.535 6.535 13 N -0.619 5.619 14 C 0.273 3.727 15 C -0.302 4.302 16 C 0.088 3.912 17 C -0.082 4.082 18 N -0.341 5.341 19 C 0.275 3.725 20 C -0.554 4.554 21 H 0.049 0.951 22 C 0.023 3.977 23 N -0.917 5.917 24 Si 0.971 3.029 25 H -0.266 1.266 26 H -0.272 1.272 27 H -0.275 1.275 28 N -0.354 5.354 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.426 0.574 44 H 0.162 0.838 45 H 0.083 0.917 46 H 0.104 0.896 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.026 0.974 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.970 3.686 12.214 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.028 3.972 4 H 0.134 0.866 5 O -0.290 6.290 6 C 0.013 3.987 7 C -0.194 4.194 8 C -0.156 4.156 9 C -0.162 4.162 10 C -0.160 4.160 11 C 0.303 3.697 12 O -0.409 6.409 13 N -0.270 5.270 14 C 0.019 3.981 15 C -0.332 4.332 16 C -0.042 4.042 17 C -0.140 4.140 18 N -0.124 5.124 19 C 0.156 3.844 20 C -0.592 4.592 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.794 3.206 25 H -0.191 1.191 26 H -0.197 1.197 27 H -0.200 1.200 28 N -0.184 5.184 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.264 0.736 44 H 0.179 0.821 45 H 0.102 0.898 46 H 0.123 0.877 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.044 0.956 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.227 3.351 11.729 27.124 hybrid contribution 0.513 0.623 -0.557 0.981 sum -23.713 3.974 11.171 26.512 Atomic orbital electron populations 1.21941 0.92730 1.03586 1.02947 1.22055 0.98861 0.93077 1.03865 1.21911 0.87722 0.96977 0.90579 0.86564 1.88105 1.38040 1.70944 1.31920 1.23388 0.83946 0.92049 0.99356 1.22988 0.99796 0.95789 1.00861 1.22427 0.98997 0.98924 0.95272 1.22356 1.02133 0.94226 0.97474 1.22252 1.00771 0.97891 0.95072 1.21348 0.91635 0.76148 0.80560 1.90639 1.65458 1.45153 1.39630 1.42503 1.01616 1.63022 1.19905 1.19285 0.85611 0.99671 0.93487 1.21406 0.89580 1.18143 1.04101 1.21728 0.98697 0.97126 0.86673 1.20470 0.90451 1.02732 1.00353 1.48800 1.03886 1.46958 1.12720 1.19265 0.80578 0.96476 0.88048 1.21393 1.17971 0.98512 1.21310 0.93285 1.25729 0.95006 0.99375 0.97694 1.69994 1.22014 1.27351 1.36176 0.85416 0.77915 0.78860 0.78363 1.19097 1.19690 1.20035 1.77175 0.88575 1.30363 1.22301 0.90740 0.91709 0.90926 0.91708 0.89137 0.88390 0.93032 0.90483 0.89605 0.91347 0.89727 0.92770 0.88736 0.91892 0.73588 0.82063 0.89798 0.87704 0.91097 0.92986 0.95609 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.58 71.98 0.62 -0.87 16 2 C -0.14 -2.12 5.61 30.59 0.17 -1.95 16 3 C 0.09 1.77 2.67 29.85 0.08 1.85 16 4 H 0.12 1.64 7.80 -2.39 -0.02 1.62 16 5 O -0.37 -8.48 9.01 -129.99 -1.17 -9.65 16 6 C 0.07 1.06 2.08 31.32 0.07 1.13 16 7 C -0.16 -2.50 6.56 31.67 0.21 -2.29 16 8 C -0.12 -1.42 6.91 31.88 0.22 -1.20 16 9 C -0.12 -1.55 6.83 31.67 0.22 -1.33 16 10 C -0.12 -1.64 6.44 31.32 0.20 -1.44 16 11 C 0.52 15.37 7.15 87.66 0.63 15.99 16 12 O -0.54 -20.60 13.64 15.90 0.22 -20.38 16 13 N -0.62 -19.00 5.35 -307.50 -1.64 -20.64 16 14 C 0.27 11.34 8.11 133.32 1.08 12.42 16 15 C -0.30 -12.84 9.52 22.11 0.21 -12.63 16 16 C 0.09 3.83 6.92 41.38 0.29 4.12 16 17 C -0.08 -2.83 10.11 71.23 0.72 -2.11 16 18 N -0.34 -16.77 3.59 -338.43 -1.22 -17.98 16 19 C 0.28 14.66 5.99 85.64 0.51 15.17 16 20 C -0.55 -31.20 9.39 25.60 0.24 -30.96 16 21 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 22 C 0.02 1.27 5.46 84.65 0.46 1.73 16 23 N -0.92 -51.88 13.29 21.45 0.28 -51.59 16 24 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 28 N -0.35 -16.74 12.59 -54.45 -0.69 -17.43 16 29 H 0.07 0.48 8.01 -2.39 -0.02 0.46 16 30 H 0.06 0.64 5.79 -2.39 -0.01 0.62 16 31 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.16 7.77 -2.39 -0.02 1.14 16 34 H 0.10 1.01 5.34 -2.39 -0.01 1.00 16 35 H 0.05 1.13 8.08 -2.38 -0.02 1.11 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 1.08 7.95 -2.39 -0.02 1.06 16 43 H 0.43 9.93 8.53 -92.71 -0.79 9.14 16 44 H 0.16 6.79 5.92 -2.91 -0.02 6.77 16 45 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 47 H 0.07 2.47 7.07 -2.39 -0.02 2.46 16 48 H 0.05 2.74 7.04 -2.38 -0.02 2.73 16 49 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -73.35 401.62 3.88 -69.47 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.15 Total: 25.41 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 5.92 Total: -2.36 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -3.26 Total: -107.65 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.95 Total: -30.04 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -73.35 3.88 -69.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348825093.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.467 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds