Wall clock time and date at job start Tue Mar 31 2020 18:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47561 * 2 1 4 4 H 1.08997 * 109.47251 * 305.00262 * 3 2 1 5 5 C 1.50707 * 109.47283 * 184.99748 * 3 2 1 6 6 H 1.07997 * 120.00194 * 240.00024 * 5 3 2 7 7 C 1.37873 * 119.99580 * 60.00232 * 5 3 2 8 8 N 1.31520 * 120.00318 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99924 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47557 * 89.99838 * 9 7 5 11 11 H 1.48494 * 109.47454 * 210.00158 * 9 7 5 12 12 H 1.48505 * 109.46960 * 329.99999 * 9 7 5 13 13 N 1.46503 * 109.47004 * 65.00260 * 3 2 1 14 14 C 1.34780 * 119.99865 * 275.00293 * 13 3 2 15 15 O 1.21593 * 119.99596 * 359.97438 * 14 13 3 16 16 N 1.34776 * 120.00204 * 180.02562 * 14 13 3 17 17 C 1.39939 * 120.00097 * 184.50175 * 16 14 13 18 18 C 1.38922 * 120.04480 * 143.50998 * 17 16 14 19 19 C 1.38120 * 120.04205 * 179.97438 * 18 17 16 20 20 C 1.38216 * 120.12428 * 359.74461 * 19 18 17 21 21 C 1.38759 * 120.08114 * 0.51168 * 20 19 18 22 22 O 1.35903 * 120.01814 * 179.76608 * 21 20 19 23 23 C 1.42890 * 116.99942 * 359.72289 * 22 21 20 24 24 C 1.52999 * 109.47066 * 180.02562 * 23 22 21 25 25 N 1.46900 * 109.47196 * 62.89666 * 24 23 22 26 26 C 1.46899 * 111.00093 * 75.92041 * 25 24 23 27 27 C 1.46902 * 110.99915 * 199.87461 * 25 24 23 28 28 C 1.38624 * 119.96075 * 359.48892 * 21 20 19 29 29 H 1.09005 * 109.46594 * 300.00246 * 1 2 3 30 30 H 1.08997 * 109.47156 * 59.99352 * 1 2 3 31 31 H 1.08995 * 109.47430 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47428 * 239.99835 * 2 1 3 33 33 H 1.09008 * 109.47218 * 120.00185 * 2 1 3 34 34 H 0.96996 * 119.99737 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00343 * 94.99832 * 13 3 2 36 36 H 0.96998 * 119.99583 * 4.49985 * 16 14 13 37 37 H 1.07998 * 119.97733 * 359.97438 * 18 17 16 38 38 H 1.08007 * 119.93647 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.95871 * 180.25355 * 20 19 18 40 40 H 1.08997 * 109.47626 * 299.99812 * 23 22 21 41 41 H 1.08998 * 109.47463 * 60.00108 * 23 22 21 42 42 H 1.09001 * 109.47648 * 182.89610 * 24 23 22 43 43 H 1.09000 * 109.47463 * 302.89512 * 24 23 22 44 44 H 1.08996 * 109.47326 * 60.00096 * 26 25 24 45 45 H 1.09000 * 109.47042 * 180.02562 * 26 25 24 46 46 H 1.09008 * 109.46884 * 299.99817 * 26 25 24 47 47 H 1.08997 * 109.47449 * 64.45839 * 27 25 24 48 48 H 1.08997 * 109.47133 * 184.46041 * 27 25 24 49 49 H 1.09006 * 109.47073 * 304.46050 * 27 25 24 50 50 H 1.08000 * 120.06486 * 180.23169 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8810 -1.3818 10 1 6.5549 -0.3504 -0.7602 11 1 6.3830 0.9222 -2.8172 12 1 6.5570 2.0736 -0.6901 13 7 1.6526 2.0975 1.2519 14 6 0.4353 2.6644 1.3671 15 8 -0.3411 2.6326 0.4318 16 7 0.0789 3.2674 2.5185 17 6 -1.2170 3.7729 2.6718 18 6 -1.8537 3.6926 3.9038 19 6 -3.1325 4.1921 4.0552 20 6 -3.7799 4.7775 2.9834 21 6 -3.1508 4.8556 1.7491 22 8 -3.7904 5.4272 0.6950 23 6 -5.1109 5.9211 0.9277 24 6 -5.6651 6.5237 -0.3648 25 7 -5.7706 5.4750 -1.3881 26 6 -6.9266 4.6052 -1.1333 27 6 -5.8373 6.0583 -2.7347 28 6 -1.8674 4.3555 1.5934 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0604 -2.9503 35 1 2.2720 2.1231 1.9978 36 1 0.7207 3.3510 3.2410 37 1 -1.3484 3.2394 4.7439 38 1 -3.6258 4.1291 5.0139 39 1 -4.7783 5.1708 3.1058 40 1 -5.7535 5.1022 1.2511 41 1 -5.0810 6.6872 1.7025 42 1 -6.6517 6.9464 -0.1749 43 1 -4.9952 7.3084 -0.7164 44 1 -7.8395 5.2005 -1.1477 45 1 -6.9808 3.8376 -1.9053 46 1 -6.8169 4.1316 -0.1576 47 1 -4.9029 6.5750 -2.9536 48 1 -5.9944 5.2660 -3.4665 49 1 -6.6642 6.7669 -2.7832 50 1 -1.3747 4.4188 0.6344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354770910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:28 Heat of formation + Delta-G solvation = -29.864227 kcal Electronic energy + Delta-G solvation = -29085.188975 eV Core-core repulsion = 25113.273325 eV Total energy + Delta-G solvation = -3971.915650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.37179 -39.42264 -37.92075 -36.88912 -35.22030 -33.91090 -32.36188 -31.10873 -30.86263 -29.33197 -28.81203 -27.80356 -26.77907 -24.68047 -23.26426 -22.64745 -22.16858 -21.18594 -20.28070 -19.46250 -18.40217 -18.05317 -16.47787 -16.32723 -16.09515 -15.75245 -15.67517 -15.19108 -15.01322 -14.81762 -14.75664 -14.43783 -14.02855 -13.59004 -13.17910 -13.14863 -12.73604 -12.67757 -12.63387 -12.59038 -12.20023 -11.95027 -11.79600 -11.75204 -11.55859 -11.47435 -11.21598 -10.96132 -10.90417 -10.83738 -10.77238 -10.27411 -10.13480 -9.88163 -9.54094 -9.25905 -8.99061 -8.55010 -8.47715 -8.13044 -7.94257 -7.65903 -6.09513 -4.18798 1.50728 1.63823 3.07557 3.26110 3.32931 3.34717 3.43765 3.68207 3.76715 4.13097 4.34815 4.65172 4.75423 4.92879 4.96245 5.02301 5.08236 5.08883 5.12523 5.21694 5.22284 5.31098 5.34803 5.38620 5.48518 5.57133 5.70233 5.72524 5.74008 6.09196 6.43261 6.44692 6.47016 6.54571 6.59081 6.66328 6.73650 6.75705 6.79168 7.08158 7.16071 7.22860 7.40890 7.44137 7.52149 7.64629 7.67845 7.91310 8.03259 8.22612 8.77517 8.89354 9.31258 9.50065 10.95811 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.002621 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.273866 B =10680.273649 C =12039.835229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.719 5.719 14 C 0.691 3.309 15 O -0.570 6.570 16 N -0.697 5.697 17 C 0.218 3.782 18 C -0.194 4.194 19 C -0.065 4.065 20 C -0.239 4.239 21 C 0.149 3.851 22 O -0.293 6.293 23 C 0.067 3.933 24 C 0.055 3.945 25 N -0.539 5.539 26 C 0.022 3.978 27 C 0.026 3.974 28 C -0.152 4.152 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.020 0.980 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.385 0.615 36 H 0.403 0.597 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.022 0.978 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.843 11.055 9.641 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.370 5.370 14 C 0.391 3.609 15 O -0.446 6.446 16 N -0.345 5.345 17 C 0.121 3.879 18 C -0.215 4.215 19 C -0.084 4.084 20 C -0.258 4.258 21 C 0.102 3.898 22 O -0.206 6.206 23 C -0.010 4.010 24 C -0.073 4.073 25 N -0.263 5.263 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.173 4.173 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.117 0.883 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.238 0.762 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.041 0.959 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.041 0.959 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.942 10.586 8.310 22.428 hybrid contribution 0.665 0.381 0.807 1.113 sum -17.277 10.966 9.117 22.402 Atomic orbital electron populations 1.21813 0.98207 0.97869 1.01384 1.21954 0.92730 0.99856 1.02149 1.18722 0.93944 0.88900 0.79973 0.93154 1.21222 0.90673 1.39037 1.06295 0.92122 1.24876 0.98559 0.94859 0.95378 1.69902 1.35076 1.37553 1.09302 0.86454 0.84911 0.78380 0.77369 1.20590 1.21084 1.19910 1.45830 1.13241 1.58648 1.19292 1.16141 0.83707 0.78776 0.82257 1.90930 1.51651 1.64355 1.37714 1.42872 1.11984 1.61344 1.18345 1.17157 0.84673 0.92659 0.93365 1.20753 0.96201 1.07408 0.97116 1.20569 0.93789 0.96135 0.97879 1.21071 1.01549 1.09856 0.93372 1.18803 0.91907 0.92939 0.86126 1.86204 1.28353 1.72419 1.33651 1.22761 0.82951 0.98022 0.97226 1.22196 0.99641 0.93903 0.91597 1.61859 1.41741 1.20367 1.02332 1.22466 0.90267 0.97055 1.02825 1.22397 1.00890 0.99019 0.89875 1.20537 0.93857 1.01668 1.01257 0.94285 0.93077 0.96055 0.88298 0.95160 0.92557 0.78293 0.76223 0.85990 0.85987 0.86172 0.92181 0.91884 0.92619 0.89650 0.95851 0.91074 0.91355 0.90991 0.91186 0.95921 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.15 0.32 -2.83 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.30 16 3 C 0.29 7.23 2.24 -69.08 -0.15 7.08 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.76 11.30 55.43 0.63 -24.13 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.72 -14.91 5.03 -59.81 -0.30 -15.21 16 14 C 0.69 14.07 6.97 -86.92 -0.61 13.47 16 15 O -0.57 -13.70 11.00 5.28 0.06 -13.64 16 16 N -0.70 -11.03 5.34 -14.24 -0.08 -11.11 16 17 C 0.22 3.46 6.27 -83.71 -0.52 2.93 16 18 C -0.19 -2.48 9.96 -39.37 -0.39 -2.88 16 19 C -0.06 -0.75 10.03 -39.63 -0.40 -1.15 16 20 C -0.24 -2.95 9.04 -39.40 -0.36 -3.30 16 21 C 0.15 2.27 6.68 -39.25 -0.26 2.00 16 22 O -0.29 -4.34 10.05 -19.43 -0.20 -4.54 16 23 C 0.07 0.67 4.92 37.16 0.18 0.86 16 24 C 0.05 0.50 5.39 -3.82 -0.02 0.47 16 25 N -0.54 -5.83 4.86 -251.26 -1.22 -7.05 16 26 C 0.02 0.20 9.39 60.06 0.56 0.76 16 27 C 0.03 0.24 9.52 60.07 0.57 0.81 16 28 C -0.15 -2.67 8.62 -39.25 -0.34 -3.01 16 29 H 0.04 0.90 5.65 -51.93 -0.29 0.60 16 30 H 0.05 1.27 7.84 -51.93 -0.41 0.86 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 33 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.39 6.83 8.56 -40.82 -0.35 6.48 16 36 H 0.40 4.89 8.84 -40.82 -0.36 4.53 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.12 1.16 6.29 -52.49 -0.33 0.83 16 40 H 0.06 0.57 6.38 -51.93 -0.33 0.24 16 41 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 42 H 0.06 0.38 7.96 -51.93 -0.41 -0.03 16 43 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 44 H 0.02 0.17 8.09 -51.93 -0.42 -0.25 16 45 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 46 H 0.07 0.62 6.84 -51.92 -0.36 0.26 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 49 H 0.02 0.17 8.13 -51.93 -0.42 -0.25 16 50 H 0.15 3.10 6.33 -52.49 -0.33 2.77 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -32.32 398.17 -10.11 -42.43 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -8.02 Total: 12.39 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.96 Total: -0.75 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.97 Total: -57.50 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.14 Total: -18.18 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.32 -10.11 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354770910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.564 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds