Wall clock time and date at job start Tue Mar 31 2020 18:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47561 * 2 1 4 4 H 1.08997 * 109.47251 * 305.00262 * 3 2 1 5 5 C 1.50707 * 109.47283 * 184.99748 * 3 2 1 6 6 H 1.07997 * 120.00194 * 240.00024 * 5 3 2 7 7 C 1.37873 * 119.99580 * 60.00232 * 5 3 2 8 8 N 1.31520 * 120.00318 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99924 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47557 * 89.99838 * 9 7 5 11 11 H 1.48494 * 109.47454 * 210.00158 * 9 7 5 12 12 H 1.48505 * 109.46960 * 329.99999 * 9 7 5 13 13 N 1.46503 * 109.47004 * 65.00260 * 3 2 1 14 14 C 1.34780 * 119.99865 * 275.00293 * 13 3 2 15 15 O 1.21593 * 119.99596 * 359.97438 * 14 13 3 16 16 N 1.34776 * 120.00204 * 180.02562 * 14 13 3 17 17 C 1.39939 * 120.00097 * 184.50175 * 16 14 13 18 18 C 1.38922 * 120.04480 * 143.50998 * 17 16 14 19 19 C 1.38120 * 120.04205 * 179.97438 * 18 17 16 20 20 C 1.38216 * 120.12428 * 359.74461 * 19 18 17 21 21 C 1.38759 * 120.08114 * 0.51168 * 20 19 18 22 22 O 1.35903 * 120.01814 * 179.76608 * 21 20 19 23 23 C 1.42890 * 116.99942 * 359.72289 * 22 21 20 24 24 C 1.52999 * 109.47066 * 180.02562 * 23 22 21 25 25 N 1.46900 * 109.47196 * 62.89666 * 24 23 22 26 26 C 1.46899 * 111.00093 * 75.92041 * 25 24 23 27 27 C 1.46902 * 110.99915 * 199.87461 * 25 24 23 28 28 C 1.38624 * 119.96075 * 359.48892 * 21 20 19 29 29 H 1.09005 * 109.46594 * 300.00246 * 1 2 3 30 30 H 1.08997 * 109.47156 * 59.99352 * 1 2 3 31 31 H 1.08995 * 109.47430 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47428 * 239.99835 * 2 1 3 33 33 H 1.09008 * 109.47218 * 120.00185 * 2 1 3 34 34 H 0.96996 * 119.99737 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00343 * 94.99832 * 13 3 2 36 36 H 0.96998 * 119.99583 * 4.49985 * 16 14 13 37 37 H 1.07998 * 119.97733 * 359.97438 * 18 17 16 38 38 H 1.08007 * 119.93647 * 180.02562 * 19 18 17 39 39 H 1.07998 * 119.95871 * 180.25355 * 20 19 18 40 40 H 1.08997 * 109.47626 * 299.99812 * 23 22 21 41 41 H 1.08998 * 109.47463 * 60.00108 * 23 22 21 42 42 H 1.09001 * 109.47648 * 182.89610 * 24 23 22 43 43 H 1.09000 * 109.47463 * 302.89512 * 24 23 22 44 44 H 1.08996 * 109.47326 * 60.00096 * 26 25 24 45 45 H 1.09000 * 109.47042 * 180.02562 * 26 25 24 46 46 H 1.09008 * 109.46884 * 299.99817 * 26 25 24 47 47 H 1.08997 * 109.47449 * 64.45839 * 27 25 24 48 48 H 1.08997 * 109.47133 * 184.46041 * 27 25 24 49 49 H 1.09006 * 109.47073 * 304.46050 * 27 25 24 50 50 H 1.08000 * 120.06486 * 180.23169 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8810 -1.3818 10 1 6.5549 -0.3504 -0.7602 11 1 6.3830 0.9222 -2.8172 12 1 6.5570 2.0736 -0.6901 13 7 1.6526 2.0975 1.2519 14 6 0.4353 2.6644 1.3671 15 8 -0.3411 2.6326 0.4318 16 7 0.0789 3.2674 2.5185 17 6 -1.2170 3.7729 2.6718 18 6 -1.8537 3.6926 3.9038 19 6 -3.1325 4.1921 4.0552 20 6 -3.7799 4.7775 2.9834 21 6 -3.1508 4.8556 1.7491 22 8 -3.7904 5.4272 0.6950 23 6 -5.1109 5.9211 0.9277 24 6 -5.6651 6.5237 -0.3648 25 7 -5.7706 5.4750 -1.3881 26 6 -6.9266 4.6052 -1.1333 27 6 -5.8373 6.0583 -2.7347 28 6 -1.8674 4.3555 1.5934 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0604 -2.9503 35 1 2.2720 2.1231 1.9978 36 1 0.7207 3.3510 3.2410 37 1 -1.3484 3.2394 4.7439 38 1 -3.6258 4.1291 5.0139 39 1 -4.7783 5.1708 3.1058 40 1 -5.7535 5.1022 1.2511 41 1 -5.0810 6.6872 1.7025 42 1 -6.6517 6.9464 -0.1749 43 1 -4.9952 7.3084 -0.7164 44 1 -7.8395 5.2005 -1.1477 45 1 -6.9808 3.8376 -1.9053 46 1 -6.8169 4.1316 -0.1576 47 1 -4.9029 6.5750 -2.9536 48 1 -5.9944 5.2660 -3.4665 49 1 -6.6642 6.7669 -2.7832 50 1 -1.3747 4.4188 0.6344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354770910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:27 Heat of formation + Delta-G solvation = -52.975844 kcal Electronic energy + Delta-G solvation = -29086.191170 eV Core-core repulsion = 25113.273325 eV Total energy + Delta-G solvation = -3972.917845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67982 -40.68347 -38.95204 -37.89931 -36.94972 -35.37388 -34.28043 -32.73777 -31.98779 -30.42281 -29.97473 -28.69183 -28.50266 -25.55238 -25.05271 -23.96556 -23.22375 -22.39621 -21.52466 -21.31159 -19.80389 -19.42262 -18.01895 -17.38623 -17.29225 -17.09336 -16.78929 -16.59573 -16.35880 -15.96901 -15.81607 -15.63928 -15.43628 -15.01844 -14.58430 -14.41186 -14.27978 -14.03529 -13.54893 -13.48635 -13.40318 -13.30614 -13.17145 -12.87969 -12.77037 -12.69728 -12.64071 -12.60374 -12.48573 -12.16358 -12.06177 -11.82273 -11.74066 -11.58597 -11.13219 -11.03683 -10.85267 -10.52839 -9.70450 -9.28351 -9.24048 -8.89522 -8.14589 -6.31996 0.39701 0.57694 1.45644 1.46673 1.56810 1.79309 2.24178 2.37045 2.45825 2.93424 2.99778 3.14806 3.52798 3.88956 4.02009 4.09861 4.17047 4.27873 4.35505 4.37141 4.42860 4.44401 4.49906 4.56794 4.57698 4.60212 4.67564 4.71957 4.74712 4.80965 4.90464 4.99328 5.00609 5.07572 5.23394 5.39311 5.43224 5.45657 5.46608 5.55600 5.58315 5.62654 5.78597 5.89280 5.99983 6.06290 6.11388 6.18049 6.31961 6.64402 6.76195 7.28820 7.36686 7.75861 8.91014 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.002621 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.273866 B =10680.273649 C =12039.835229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C 0.297 3.703 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.715 5.715 14 C 0.690 3.310 15 O -0.611 6.611 16 N -0.678 5.678 17 C 0.195 3.805 18 C -0.185 4.185 19 C -0.054 4.054 20 C -0.228 4.228 21 C 0.136 3.864 22 O -0.324 6.324 23 C 0.059 3.941 24 C 0.055 3.945 25 N -0.574 5.574 26 C 0.024 3.976 27 C 0.028 3.972 28 C -0.190 4.190 29 H 0.039 0.961 30 H 0.022 0.978 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.422 0.578 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.153 0.847 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.042 0.958 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.821 11.589 13.118 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.193 3.807 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.367 5.367 14 C 0.391 3.609 15 O -0.491 6.491 16 N -0.328 5.328 17 C 0.099 3.901 18 C -0.206 4.206 19 C -0.072 4.072 20 C -0.248 4.248 21 C 0.089 3.911 22 O -0.238 6.238 23 C -0.016 4.016 24 C -0.072 4.072 25 N -0.299 5.299 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.211 4.211 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.260 0.740 37 H 0.170 0.830 38 H 0.184 0.816 39 H 0.171 0.829 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.927 11.154 11.863 24.967 hybrid contribution 0.823 0.300 -0.262 0.914 sum -18.104 11.454 11.601 24.363 Atomic orbital electron populations 1.21627 0.97236 0.98795 1.00006 1.21794 0.93449 0.99281 1.01334 1.18265 0.93509 0.88776 0.80153 0.98597 1.21559 0.91202 1.38963 1.06783 0.90895 1.25780 1.03378 0.94398 0.94972 1.70062 1.37081 1.38335 1.09849 0.85346 0.78998 0.78873 0.77100 1.19554 1.21365 1.18942 1.45428 1.13983 1.58797 1.18521 1.16243 0.83015 0.78710 0.82973 1.90921 1.52804 1.65702 1.39673 1.42506 1.12857 1.60226 1.17230 1.17412 0.84587 0.93705 0.94386 1.21090 0.96702 1.06595 0.96231 1.21121 0.93013 0.93826 0.99266 1.21445 1.02639 1.08671 0.92000 1.18926 0.91380 0.93199 0.87552 1.86177 1.30516 1.72625 1.34477 1.23093 0.80979 0.98893 0.98597 1.22258 1.00888 0.93287 0.90803 1.61832 1.43130 1.21655 1.03303 1.22443 0.90540 0.96977 1.02415 1.22360 1.01069 0.99224 0.89338 1.20372 0.95700 1.04933 1.00113 0.94170 0.95923 0.93754 0.90897 0.93897 0.92600 0.76298 0.73955 0.82958 0.81560 0.82939 0.91391 0.89393 0.89643 0.90299 0.93855 0.91665 0.91636 0.92086 0.91412 0.94000 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.51 71.98 0.61 -5.12 16 2 C -0.12 -6.07 5.45 30.59 0.17 -5.91 16 3 C 0.30 15.61 2.24 44.25 0.10 15.71 16 4 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 5 C -0.55 -29.22 8.73 25.60 0.22 -28.99 16 6 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 7 C 0.01 0.81 5.29 84.65 0.45 1.25 16 8 N -0.92 -53.14 11.30 21.45 0.24 -52.90 16 9 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 N -0.71 -30.34 5.03 -461.38 -2.32 -32.66 16 14 C 0.69 29.23 6.97 179.05 1.25 30.48 16 15 O -0.61 -31.56 11.00 -4.01 -0.04 -31.60 16 16 N -0.68 -21.51 5.34 -317.21 -1.69 -23.21 16 17 C 0.19 6.14 6.27 38.13 0.24 6.38 16 18 C -0.19 -4.19 9.96 22.41 0.22 -3.96 16 19 C -0.05 -1.01 10.03 22.24 0.22 -0.79 16 20 C -0.23 -4.97 9.04 22.39 0.20 -4.76 16 21 C 0.14 4.17 6.68 22.49 0.15 4.32 16 22 O -0.32 -9.86 10.05 -92.46 -0.93 -10.79 16 23 C 0.06 1.12 4.92 71.98 0.35 1.48 16 24 C 0.06 0.95 5.39 86.30 0.47 1.41 16 25 N -0.57 -12.41 4.86 -948.84 -4.61 -17.02 16 26 C 0.02 0.41 9.39 127.69 1.20 1.61 16 27 C 0.03 0.51 9.52 127.69 1.22 1.73 16 28 C -0.19 -7.05 8.62 22.49 0.19 -6.85 16 29 H 0.04 1.89 5.65 -2.38 -0.01 1.88 16 30 H 0.02 1.17 7.84 -2.39 -0.02 1.15 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 4.12 5.95 -2.39 -0.01 4.11 16 33 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.40 14.10 8.56 -92.71 -0.79 13.31 16 36 H 0.42 9.71 8.84 -92.71 -0.82 8.89 16 37 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.15 2.28 6.29 -2.91 -0.02 2.26 16 40 H 0.07 1.16 6.38 -2.39 -0.02 1.14 16 41 H 0.09 1.19 7.65 -2.39 -0.02 1.17 16 42 H 0.09 0.94 7.96 -2.39 -0.02 0.92 16 43 H 0.08 1.42 7.94 -2.39 -0.02 1.40 16 44 H 0.04 0.55 8.09 -2.39 -0.02 0.53 16 45 H 0.06 1.16 8.07 -2.39 -0.02 1.14 16 46 H 0.06 1.13 6.84 -2.38 -0.02 1.11 16 47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.07 1.23 8.04 -2.39 -0.02 1.21 16 49 H 0.04 0.59 8.13 -2.38 -0.02 0.57 16 50 H 0.10 4.69 6.33 -2.91 -0.02 4.67 16 Total: -1.00 -76.07 398.17 -0.73 -76.79 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.66 Total: 38.92 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 7.26 Total: 7.98 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -8.38 Total: -125.79 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.97 Total: -42.39 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -76.07 -0.73 -76.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354770910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.817 kcal (2) G-P(sol) polarization free energy of solvation -76.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds