Wall clock time and date at job start Tue Mar 31 2020 18:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 H 1.09003 * 109.47212 * 54.99580 * 3 2 1 5 5 C 1.50703 * 109.47408 * 174.99820 * 3 2 1 6 6 H 1.07994 * 119.99660 * 119.99685 * 5 3 2 7 7 C 1.37872 * 119.99810 * 300.00234 * 5 3 2 8 8 N 1.31516 * 119.99662 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00304 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47251 * 90.00135 * 9 7 5 11 11 H 1.48494 * 109.47585 * 210.00350 * 9 7 5 12 12 H 1.48508 * 109.47102 * 330.00233 * 9 7 5 13 13 N 1.46506 * 109.47066 * 294.99815 * 3 2 1 14 14 C 1.34782 * 119.99643 * 84.99647 * 13 3 2 15 15 O 1.21578 * 120.00145 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99715 * 179.97438 * 14 13 3 17 17 C 1.39934 * 120.00004 * 184.62699 * 16 14 13 18 18 C 1.38924 * 120.04628 * 324.64821 * 17 16 14 19 19 C 1.38115 * 120.04413 * 180.26880 * 18 17 16 20 20 C 1.38214 * 120.12441 * 0.02562 * 19 18 17 21 21 C 1.38765 * 120.08277 * 359.97438 * 20 19 18 22 22 O 1.35897 * 120.01825 * 179.97438 * 21 20 19 23 23 C 1.42894 * 117.00539 * 0.02604 * 22 21 20 24 24 C 1.53000 * 109.47471 * 179.97438 * 23 22 21 25 25 N 1.46898 * 109.47104 * 64.99742 * 24 23 22 26 26 C 1.46901 * 110.99985 * 66.04941 * 25 24 23 27 27 C 1.46903 * 110.99788 * 189.99919 * 25 24 23 28 28 C 1.38627 * 119.95752 * 0.02562 * 21 20 19 29 29 H 1.09006 * 109.47070 * 60.00489 * 1 2 3 30 30 H 1.09007 * 109.46688 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47382 * 300.00170 * 1 2 3 32 32 H 1.08993 * 109.47637 * 240.00429 * 2 1 3 33 33 H 1.08997 * 109.47197 * 119.99265 * 2 1 3 34 34 H 0.97005 * 119.99575 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00254 * 264.99877 * 13 3 2 36 36 H 0.97005 * 119.99659 * 4.63929 * 16 14 13 37 37 H 1.08004 * 119.97431 * 0.27564 * 18 17 16 38 38 H 1.08001 * 119.93863 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.95670 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47251 * 299.99777 * 23 22 21 41 41 H 1.08999 * 109.46982 * 59.99511 * 23 22 21 42 42 H 1.09001 * 109.46875 * 185.00245 * 24 23 22 43 43 H 1.09001 * 109.46991 * 304.99631 * 24 23 22 44 44 H 1.09000 * 109.47515 * 59.99607 * 26 25 24 45 45 H 1.08996 * 109.47421 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.46758 * 299.99819 * 26 25 24 47 47 H 1.08997 * 109.47193 * 60.00619 * 27 25 24 48 48 H 1.09000 * 109.46486 * 179.97438 * 27 25 24 49 49 H 1.08997 * 109.47102 * 300.00082 * 27 25 24 50 50 H 1.08002 * 120.06052 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4445 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8807 1.3363 9 14 3.0963 0.1102 2.5707 10 1 2.8745 -1.3259 2.2646 11 1 3.7940 0.2361 3.8755 12 1 1.7880 0.8094 2.6394 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3670 15 8 -0.3413 2.6325 -0.4319 16 7 0.0787 3.2673 -2.5185 17 6 -1.1455 3.9395 -2.6066 18 6 -2.2570 3.4518 -1.9309 19 6 -3.4666 4.1121 -2.0223 20 6 -3.5749 5.2589 -2.7862 21 6 -2.4680 5.7506 -3.4634 22 8 -2.5760 6.8780 -4.2145 23 6 -3.8588 7.5058 -4.2617 24 6 -3.7853 8.7503 -5.1486 25 7 -3.4976 8.3493 -6.5322 26 6 -4.6133 7.5808 -7.1003 27 6 -3.1858 9.5185 -7.3651 28 6 -1.2522 5.0906 -3.3739 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.8770 0.4829 2.1133 35 1 2.2719 2.1232 -1.9978 36 1 0.6707 3.2352 -3.2862 37 1 -2.1752 2.5557 -1.3335 38 1 -4.3298 3.7313 -1.4966 39 1 -4.5222 5.7729 -2.8562 40 1 -4.5894 6.8090 -4.6727 41 1 -4.1591 7.7949 -3.2546 42 1 -4.7384 9.2780 -5.1138 43 1 -2.9932 9.4068 -4.7885 44 1 -5.5159 8.1918 -7.0940 45 1 -4.3744 7.2970 -8.1252 46 1 -4.7776 6.6837 -6.5034 47 1 -2.3123 10.0300 -6.9609 48 1 -2.9764 9.1931 -8.3842 49 1 -4.0367 10.1997 -7.3684 50 1 -0.3895 5.4720 -3.8999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354770923.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:31 Heat of formation + Delta-G solvation = -21.950780 kcal Electronic energy + Delta-G solvation = -28685.035856 eV Core-core repulsion = 24713.463359 eV Total energy + Delta-G solvation = -3971.572497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52494 -39.67803 -38.10955 -37.04791 -35.47585 -34.14242 -32.38502 -31.49455 -31.22985 -29.57681 -28.81008 -28.01376 -27.32688 -24.91475 -23.06235 -22.61755 -22.41493 -21.44966 -20.53465 -19.82680 -18.43944 -18.30950 -16.72015 -16.46220 -16.19976 -16.14592 -15.87892 -15.46492 -15.19079 -14.94114 -14.76329 -14.62271 -14.35853 -13.60846 -13.49078 -13.34133 -13.05884 -12.87849 -12.79053 -12.70411 -12.45105 -12.17356 -12.07275 -11.95851 -11.82304 -11.78591 -11.66278 -11.10853 -10.98733 -10.88522 -10.87519 -10.62897 -10.02529 -9.89375 -9.58988 -9.34722 -9.21255 -8.77037 -8.75763 -8.37034 -8.13750 -7.76758 -6.20645 -4.23169 1.38403 1.59675 2.84304 3.24364 3.30840 3.36679 3.42018 3.49770 3.59496 4.00342 4.32142 4.46931 4.60087 4.73982 4.76164 4.87172 4.92419 4.95803 5.00899 5.08127 5.12950 5.13129 5.20206 5.35655 5.45346 5.48517 5.51801 5.55424 5.61452 5.84142 5.98659 6.04513 6.18020 6.33898 6.37666 6.47027 6.54820 6.57417 6.63289 6.69316 6.72057 6.83062 6.96313 7.09169 7.15259 7.31628 7.45175 7.50078 7.54073 8.27429 8.61646 8.78497 9.09749 9.40291 10.91326 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.002054 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.975256 B =13628.368472 C =14220.800763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.259 3.741 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.711 5.711 14 C 0.696 3.304 15 O -0.576 6.576 16 N -0.694 5.694 17 C 0.218 3.782 18 C -0.157 4.157 19 C -0.064 4.064 20 C -0.236 4.236 21 C 0.147 3.853 22 O -0.299 6.299 23 C 0.064 3.936 24 C 0.054 3.946 25 N -0.540 5.540 26 C 0.019 3.981 27 C 0.025 3.975 28 C -0.187 4.187 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.267 0.733 35 H 0.393 0.607 36 H 0.405 0.595 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.024 0.976 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.024 0.976 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.664 12.958 -15.827 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.155 3.845 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.362 5.362 14 C 0.397 3.603 15 O -0.454 6.454 16 N -0.342 5.342 17 C 0.121 3.879 18 C -0.178 4.178 19 C -0.083 4.083 20 C -0.256 4.256 21 C 0.101 3.899 22 O -0.212 6.212 23 C -0.012 4.012 24 C -0.074 4.074 25 N -0.264 5.264 26 C -0.129 4.129 27 C -0.123 4.123 28 C -0.209 4.209 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.226 0.774 36 H 0.240 0.760 37 H 0.162 0.838 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.042 0.958 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.526 12.620 -14.891 28.326 hybrid contribution -0.686 0.026 0.075 0.691 sum -21.212 12.646 -14.816 28.799 Atomic orbital electron populations 1.21864 0.96898 0.98919 1.02305 1.22309 0.94450 1.00017 1.01082 1.19080 0.95446 0.88184 0.81757 0.93177 1.21034 0.88562 1.39808 1.07887 0.90183 1.24824 0.94889 0.95161 0.97664 1.69869 1.08681 1.44479 1.29815 0.86898 0.81002 0.79931 0.80878 1.20240 1.22181 1.18378 1.45447 1.13399 1.58572 1.18784 1.16035 0.83472 0.78668 0.82171 1.90884 1.51796 1.64192 1.38479 1.42784 1.19784 1.56819 1.14766 1.17157 0.84825 0.90113 0.95760 1.21308 0.90790 1.02816 1.02898 1.20788 0.97258 0.93970 0.96302 1.21090 0.98076 1.01196 1.05216 1.18552 0.93579 0.86550 0.91261 1.86134 1.32441 1.37298 1.65351 1.22807 0.84776 0.94343 0.99250 1.22204 1.01084 0.95629 0.88444 1.61924 1.39985 1.22789 1.01721 1.22476 0.91339 0.98261 1.00805 1.22390 1.00306 0.91566 0.98061 1.19965 0.97053 0.96065 1.07823 0.92931 0.95085 0.92815 0.92318 0.92754 0.92276 0.77422 0.76003 0.83824 0.85865 0.86142 0.91941 0.91621 0.92718 0.89399 0.95709 0.91141 0.91119 0.91114 0.91191 0.95782 0.85132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.53 16 2 C -0.14 -3.07 5.11 -26.73 -0.14 -3.21 16 3 C 0.26 6.07 1.83 -69.08 -0.13 5.94 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 5 C -0.53 -14.31 9.31 -34.44 -0.32 -14.63 16 6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 9 Si 0.88 21.68 24.41 -169.99 -4.15 17.53 16 10 H -0.28 -6.55 6.83 56.52 0.39 -6.16 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.71 -13.82 5.03 -59.80 -0.30 -14.12 16 14 C 0.70 13.06 6.97 -86.91 -0.61 12.46 16 15 O -0.58 -12.47 10.92 5.30 0.06 -12.41 16 16 N -0.69 -10.31 5.34 -14.24 -0.08 -10.39 16 17 C 0.22 3.26 6.29 -83.72 -0.53 2.74 16 18 C -0.16 -2.40 8.70 -39.37 -0.34 -2.75 16 19 C -0.06 -0.82 10.03 -39.64 -0.40 -1.21 16 20 C -0.24 -2.75 9.04 -39.40 -0.36 -3.11 16 21 C 0.15 1.87 6.68 -39.24 -0.26 1.61 16 22 O -0.30 -3.51 10.08 -19.42 -0.20 -3.71 16 23 C 0.06 0.52 4.79 37.16 0.18 0.70 16 24 C 0.05 0.38 5.34 -3.83 -0.02 0.36 16 25 N -0.54 -4.27 4.97 -251.26 -1.25 -5.52 16 26 C 0.02 0.13 9.33 60.07 0.56 0.69 16 27 C 0.02 0.15 9.57 60.07 0.57 0.73 16 28 C -0.19 -2.54 9.90 -39.25 -0.39 -2.93 16 29 H 0.05 1.03 5.65 -51.93 -0.29 0.73 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 1.13 7.84 -51.93 -0.41 0.73 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.26 3.22 -51.93 -0.17 1.09 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 35 H 0.39 6.67 8.56 -40.82 -0.35 6.32 16 36 H 0.40 4.70 8.84 -40.82 -0.36 4.34 16 37 H 0.14 2.46 6.23 -52.48 -0.33 2.13 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.09 6.29 -52.48 -0.33 0.76 16 40 H 0.06 0.46 5.85 -51.93 -0.30 0.16 16 41 H 0.07 0.46 7.66 -51.93 -0.40 0.06 16 42 H 0.05 0.29 8.12 -51.93 -0.42 -0.13 16 43 H 0.09 0.63 8.06 -51.93 -0.42 0.21 16 44 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 46 H 0.07 0.48 6.37 -51.93 -0.33 0.15 16 47 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 48 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 49 H 0.02 0.12 8.14 -51.93 -0.42 -0.30 16 50 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -32.40 390.70 -9.06 -41.46 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -7.86 Total: 9.86 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.95 Total: -3.06 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.85 Total: -55.56 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.14 Total: -16.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.15 Total: 17.53 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.40 -9.06 -41.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354770923.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.510 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds