Wall clock time and date at job start Tue Mar 31 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 H 1.09003 * 109.47212 * 54.99580 * 3 2 1 5 5 C 1.50703 * 109.47408 * 174.99820 * 3 2 1 6 6 H 1.07994 * 119.99660 * 119.99685 * 5 3 2 7 7 C 1.37872 * 119.99810 * 300.00234 * 5 3 2 8 8 N 1.31516 * 119.99662 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00304 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47251 * 90.00135 * 9 7 5 11 11 H 1.48494 * 109.47585 * 210.00350 * 9 7 5 12 12 H 1.48508 * 109.47102 * 330.00233 * 9 7 5 13 13 N 1.46506 * 109.47066 * 294.99815 * 3 2 1 14 14 C 1.34782 * 119.99643 * 84.99647 * 13 3 2 15 15 O 1.21578 * 120.00145 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99715 * 179.97438 * 14 13 3 17 17 C 1.39934 * 120.00004 * 184.62699 * 16 14 13 18 18 C 1.38924 * 120.04628 * 324.64821 * 17 16 14 19 19 C 1.38115 * 120.04413 * 180.26880 * 18 17 16 20 20 C 1.38214 * 120.12441 * 0.02562 * 19 18 17 21 21 C 1.38765 * 120.08277 * 359.97438 * 20 19 18 22 22 O 1.35897 * 120.01825 * 179.97438 * 21 20 19 23 23 C 1.42894 * 117.00539 * 0.02604 * 22 21 20 24 24 C 1.53000 * 109.47471 * 179.97438 * 23 22 21 25 25 N 1.46898 * 109.47104 * 64.99742 * 24 23 22 26 26 C 1.46901 * 110.99985 * 66.04941 * 25 24 23 27 27 C 1.46903 * 110.99788 * 189.99919 * 25 24 23 28 28 C 1.38627 * 119.95752 * 0.02562 * 21 20 19 29 29 H 1.09006 * 109.47070 * 60.00489 * 1 2 3 30 30 H 1.09007 * 109.46688 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47382 * 300.00170 * 1 2 3 32 32 H 1.08993 * 109.47637 * 240.00429 * 2 1 3 33 33 H 1.08997 * 109.47197 * 119.99265 * 2 1 3 34 34 H 0.97005 * 119.99575 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00254 * 264.99877 * 13 3 2 36 36 H 0.97005 * 119.99659 * 4.63929 * 16 14 13 37 37 H 1.08004 * 119.97431 * 0.27564 * 18 17 16 38 38 H 1.08001 * 119.93863 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.95670 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.47251 * 299.99777 * 23 22 21 41 41 H 1.08999 * 109.46982 * 59.99511 * 23 22 21 42 42 H 1.09001 * 109.46875 * 185.00245 * 24 23 22 43 43 H 1.09001 * 109.46991 * 304.99631 * 24 23 22 44 44 H 1.09000 * 109.47515 * 59.99607 * 26 25 24 45 45 H 1.08996 * 109.47421 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.46758 * 299.99819 * 26 25 24 47 47 H 1.08997 * 109.47193 * 60.00619 * 27 25 24 48 48 H 1.09000 * 109.46486 * 179.97438 * 27 25 24 49 49 H 1.08997 * 109.47102 * 300.00082 * 27 25 24 50 50 H 1.08002 * 120.06052 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4445 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8807 1.3363 9 14 3.0963 0.1102 2.5707 10 1 2.8745 -1.3259 2.2646 11 1 3.7940 0.2361 3.8755 12 1 1.7880 0.8094 2.6394 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3670 15 8 -0.3413 2.6325 -0.4319 16 7 0.0787 3.2673 -2.5185 17 6 -1.1455 3.9395 -2.6066 18 6 -2.2570 3.4518 -1.9309 19 6 -3.4666 4.1121 -2.0223 20 6 -3.5749 5.2589 -2.7862 21 6 -2.4680 5.7506 -3.4634 22 8 -2.5760 6.8780 -4.2145 23 6 -3.8588 7.5058 -4.2617 24 6 -3.7853 8.7503 -5.1486 25 7 -3.4976 8.3493 -6.5322 26 6 -4.6133 7.5808 -7.1003 27 6 -3.1858 9.5185 -7.3651 28 6 -1.2522 5.0906 -3.3739 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.8770 0.4829 2.1133 35 1 2.2719 2.1232 -1.9978 36 1 0.6707 3.2352 -3.2862 37 1 -2.1752 2.5557 -1.3335 38 1 -4.3298 3.7313 -1.4966 39 1 -4.5222 5.7729 -2.8562 40 1 -4.5894 6.8090 -4.6727 41 1 -4.1591 7.7949 -3.2546 42 1 -4.7384 9.2780 -5.1138 43 1 -2.9932 9.4068 -4.7885 44 1 -5.5159 8.1918 -7.0940 45 1 -4.3744 7.2970 -8.1252 46 1 -4.7776 6.6837 -6.5034 47 1 -2.3123 10.0300 -6.9609 48 1 -2.9764 9.1931 -8.3842 49 1 -4.0367 10.1997 -7.3684 50 1 -0.3895 5.4720 -3.8999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354770923.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:30 Heat of formation + Delta-G solvation = -45.624625 kcal Electronic energy + Delta-G solvation = -28686.062431 eV Core-core repulsion = 24713.463359 eV Total energy + Delta-G solvation = -3972.599072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75086 -40.77686 -39.00400 -37.92808 -37.03405 -35.47705 -34.38344 -33.12483 -32.02206 -30.53089 -29.92555 -29.10700 -28.47737 -25.59177 -24.71470 -23.76227 -23.59775 -22.50827 -21.59428 -21.40560 -19.96209 -19.35964 -18.30532 -17.62017 -17.33842 -17.16685 -17.00649 -16.53962 -16.29724 -16.01847 -15.83817 -15.61581 -15.46026 -15.19615 -14.94780 -14.57574 -14.30024 -14.06571 -13.83716 -13.64289 -13.54642 -13.36831 -13.24600 -12.97595 -12.91408 -12.75550 -12.67310 -12.60279 -12.43915 -12.37220 -11.84987 -11.76146 -11.67890 -11.35570 -11.23023 -11.17627 -10.88529 -10.84716 -9.84484 -9.36655 -9.25442 -8.88781 -8.36807 -6.42263 0.34292 0.55777 1.28811 1.37134 1.47109 1.64579 2.18284 2.27572 2.36789 2.90083 2.99238 3.01500 3.37944 3.86202 3.98599 4.08431 4.17447 4.26421 4.27512 4.33481 4.35579 4.38064 4.44140 4.47159 4.48741 4.57062 4.61655 4.65692 4.75215 4.83088 4.85306 4.87763 5.03290 5.04231 5.05569 5.13727 5.22904 5.33525 5.35670 5.41583 5.43845 5.53239 5.60585 5.69039 5.94713 6.02469 6.07182 6.10465 6.30420 6.56656 6.60363 7.13796 7.24493 7.63549 8.78253 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.002054 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.975256 B =13628.368472 C =14220.800763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 C 0.268 3.732 4 H 0.024 0.976 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.933 5.933 9 Si 0.937 3.063 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.711 5.711 14 C 0.698 3.302 15 O -0.604 6.604 16 N -0.679 5.679 17 C 0.198 3.802 18 C -0.180 4.180 19 C -0.063 4.063 20 C -0.226 4.226 21 C 0.145 3.855 22 O -0.312 6.312 23 C 0.056 3.944 24 C 0.056 3.944 25 N -0.565 5.565 26 C 0.020 3.980 27 C 0.026 3.974 28 C -0.193 4.193 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.270 0.730 35 H 0.404 0.596 36 H 0.420 0.580 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.034 0.966 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.380 13.567 -16.745 31.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.176 4.176 3 C 0.163 3.837 4 H 0.041 0.959 5 C -0.571 4.571 6 H 0.074 0.926 7 C -0.171 4.171 8 N -0.572 5.572 9 Si 0.764 3.236 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.363 5.363 14 C 0.399 3.601 15 O -0.484 6.484 16 N -0.327 5.327 17 C 0.102 3.898 18 C -0.201 4.201 19 C -0.081 4.081 20 C -0.245 4.245 21 C 0.098 3.902 22 O -0.226 6.226 23 C -0.019 4.019 24 C -0.072 4.072 25 N -0.290 5.290 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.214 4.214 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.239 0.761 36 H 0.258 0.742 37 H 0.139 0.861 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.053 0.947 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.262 13.254 -15.877 31.126 hybrid contribution 0.088 0.002 0.227 0.243 sum -23.174 13.256 -15.650 30.946 Atomic orbital electron populations 1.21734 0.95148 1.00377 1.01599 1.22221 0.95917 0.98453 1.01036 1.18685 0.93005 0.89371 0.82622 0.95859 1.21267 0.90289 1.38527 1.06983 0.92553 1.25543 0.95768 0.95926 0.99860 1.69979 1.10261 1.46141 1.30837 0.86030 0.79324 0.79984 0.78261 1.18453 1.22163 1.18393 1.45142 1.14215 1.58947 1.18006 1.16033 0.82762 0.78518 0.82793 1.90868 1.52464 1.65192 1.39883 1.42488 1.20239 1.55972 1.14035 1.17285 0.84527 0.90994 0.96983 1.21264 0.92228 1.02907 1.03677 1.21048 0.97007 0.93941 0.96153 1.21396 0.98999 1.00458 1.03650 1.18677 0.93533 0.86801 0.91146 1.86134 1.34676 1.36811 1.64939 1.23112 0.83483 0.94791 1.00508 1.22225 1.02016 0.95098 0.87873 1.61921 1.40907 1.23735 1.02399 1.22466 0.91488 0.98146 1.00660 1.22386 1.00613 0.91312 0.97896 1.20048 0.98022 0.95731 1.07645 0.92846 0.92440 0.94360 0.91303 0.93752 0.92096 0.76081 0.74237 0.86107 0.83587 0.83060 0.90897 0.90155 0.90559 0.89908 0.94515 0.91106 0.91538 0.91407 0.91012 0.94729 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.51 71.98 0.61 -4.45 16 2 C -0.14 -5.91 5.11 30.60 0.16 -5.75 16 3 C 0.27 12.63 1.83 44.25 0.08 12.71 16 4 H 0.02 1.24 6.63 -2.39 -0.02 1.22 16 5 C -0.53 -28.98 9.31 25.60 0.24 -28.74 16 6 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 7 C 0.03 1.63 5.45 84.65 0.46 2.09 16 8 N -0.93 -56.08 13.96 21.45 0.30 -55.78 16 9 Si 0.94 44.86 24.41 68.60 1.67 46.54 16 10 H -0.26 -11.63 6.83 99.48 0.68 -10.95 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 12 H -0.26 -12.34 6.53 99.48 0.65 -11.69 16 13 N -0.71 -27.68 5.03 -461.39 -2.32 -30.00 16 14 C 0.70 26.22 6.97 179.05 1.25 27.46 16 15 O -0.60 -26.39 10.92 -3.96 -0.04 -26.44 16 16 N -0.68 -19.94 5.34 -317.23 -1.69 -21.64 16 17 C 0.20 5.82 6.29 38.13 0.24 6.06 16 18 C -0.18 -5.41 8.70 22.40 0.19 -5.21 16 19 C -0.06 -1.48 10.03 22.23 0.22 -1.25 16 20 C -0.23 -4.64 9.04 22.39 0.20 -4.44 16 21 C 0.14 3.41 6.68 22.49 0.15 3.56 16 22 O -0.31 -6.70 10.08 -92.39 -0.93 -7.63 16 23 C 0.06 0.76 4.79 71.98 0.35 1.10 16 24 C 0.06 0.64 5.34 86.30 0.46 1.11 16 25 N -0.56 -7.86 4.97 -948.85 -4.71 -12.58 16 26 C 0.02 0.22 9.33 127.69 1.19 1.41 16 27 C 0.03 0.27 9.57 127.69 1.22 1.50 16 28 C -0.19 -5.03 9.90 22.49 0.22 -4.81 16 29 H 0.05 2.04 5.65 -2.38 -0.01 2.02 16 30 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.04 1.57 7.84 -2.39 -0.02 1.56 16 32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.04 1.99 3.22 -2.39 -0.01 1.98 16 34 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 35 H 0.40 13.72 8.56 -92.71 -0.79 12.93 16 36 H 0.42 9.48 8.84 -92.70 -0.82 8.66 16 37 H 0.12 4.19 6.23 -2.91 -0.02 4.17 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.15 2.13 6.29 -2.91 -0.02 2.11 16 40 H 0.07 0.84 5.85 -2.39 -0.01 0.83 16 41 H 0.08 0.86 7.66 -2.39 -0.02 0.84 16 42 H 0.08 0.56 8.12 -2.39 -0.02 0.54 16 43 H 0.08 1.03 8.06 -2.39 -0.02 1.01 16 44 H 0.04 0.30 8.14 -2.39 -0.02 0.29 16 45 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 46 H 0.07 0.76 6.37 -2.39 -0.02 0.75 16 47 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 48 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 49 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 50 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -70.31 390.70 -1.21 -71.52 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.73 Total: 33.66 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 7.25 Total: 2.35 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -8.43 Total: -120.00 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.97 Total: -34.06 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.67 Total: 46.54 kcal Total: -70.31 -1.21 -71.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354770923.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.895 kcal (2) G-P(sol) polarization free energy of solvation -70.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds