Wall clock time and date at job start Tue Mar 31 2020 19:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47019 * 2 1 4 4 N 1.46503 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.46502 * 120.00158 * 270.00118 * 4 3 2 6 6 C 1.52998 * 109.47132 * 270.00036 * 5 4 3 7 7 C 1.38467 * 119.99529 * 90.00792 * 4 3 2 8 8 C 1.39414 * 119.53108 * 185.00061 * 7 4 3 9 9 C 1.36847 * 119.38906 * 179.97438 * 8 7 4 10 10 C 1.40400 * 118.48641 * 359.97438 * 9 8 7 11 11 C 1.47437 * 120.48178 * 179.97438 * 10 9 8 12 12 O 1.21625 * 119.99885 * 147.84953 * 11 10 9 13 13 N 1.34773 * 119.99851 * 327.83877 * 11 10 9 14 14 C 1.36911 * 120.00058 * 4.19350 * 13 11 10 15 15 H 1.07997 * 120.00418 * 318.97479 * 14 13 11 16 16 C 1.39016 * 119.99916 * 138.96930 * 14 13 11 17 17 N 1.31387 * 120.00205 * 344.24702 * 16 14 13 18 18 Si 1.86798 * 120.00066 * 164.24985 * 16 14 13 19 19 H 1.48504 * 109.47030 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47431 * 120.00036 * 18 16 14 21 21 H 1.48508 * 109.47147 * 240.00216 * 18 16 14 22 22 C 1.46498 * 119.99984 * 184.18716 * 13 11 10 23 23 C 1.52999 * 109.46766 * 86.66618 * 22 13 11 24 24 O 1.42898 * 109.47302 * 64.99887 * 23 22 13 25 25 C 1.42904 * 113.99980 * 179.97438 * 24 23 22 26 26 C 1.39635 * 119.03584 * 0.02562 * 10 9 8 27 27 N 1.31661 * 120.51120 * 0.02562 * 26 10 9 28 28 H 1.08996 * 109.46997 * 59.99950 * 1 2 3 29 29 H 1.08996 * 109.46638 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46949 * 300.00007 * 1 2 3 31 31 H 1.09000 * 109.47587 * 240.00599 * 2 1 3 32 32 H 1.09002 * 109.47396 * 119.99920 * 2 1 3 33 33 H 1.09004 * 109.47101 * 60.00233 * 3 2 1 34 34 H 1.08991 * 109.47386 * 300.00337 * 3 2 1 35 35 H 1.08994 * 109.46896 * 30.00472 * 5 4 3 36 36 H 1.09000 * 109.46642 * 150.00357 * 5 4 3 37 37 H 1.09005 * 109.47160 * 179.97438 * 6 5 4 38 38 H 1.08994 * 109.47585 * 300.00013 * 6 5 4 39 39 H 1.09000 * 109.47095 * 60.00598 * 6 5 4 40 40 H 1.08002 * 120.30762 * 0.24619 * 8 7 4 41 41 H 1.08004 * 120.75617 * 180.02562 * 9 8 7 42 42 H 0.97002 * 120.00096 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.47355 * 206.65889 * 22 13 11 44 44 H 1.09003 * 109.47507 * 326.66680 * 22 13 11 45 45 H 1.09005 * 109.47098 * 185.00223 * 23 22 13 46 46 H 1.09004 * 109.47226 * 304.99525 * 23 22 13 47 47 H 1.08997 * 109.47478 * 300.00413 * 25 24 23 48 48 H 1.09007 * 109.46990 * 60.00203 * 25 24 23 49 49 H 1.09003 * 109.47083 * 179.97438 * 25 24 23 50 50 H 1.08004 * 119.74255 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2370 1.4427 1.2697 6 6 4.4918 2.8853 1.7112 7 6 4.1978 1.4426 -1.1983 8 6 5.5879 1.3368 -1.1887 9 6 6.2695 1.3366 -2.3753 10 6 5.5371 1.4432 -3.5684 11 6 6.2268 1.4479 -4.8715 12 8 5.6839 0.9684 -5.8486 13 7 7.4586 1.9839 -4.9800 14 6 8.1047 2.4461 -3.8649 15 1 7.5583 2.9966 -3.1134 16 6 9.4641 2.2068 -3.7000 17 7 10.0638 1.2938 -4.4302 18 14 10.4383 3.1831 -2.4402 19 1 9.5371 4.1432 -1.7534 20 1 11.0267 2.2548 -1.4417 21 1 11.5255 3.9283 -3.1244 22 6 8.1063 2.0718 -6.2911 23 6 7.6808 3.3677 -6.9842 24 8 8.1719 4.4872 -6.2441 25 6 7.8284 5.7537 -6.8097 26 6 4.1460 1.5458 -3.5028 27 7 3.5297 1.5431 -2.3394 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.6477 0.9289 2.0290 36 1 5.1895 0.9289 1.1397 37 1 5.0361 2.8854 2.6557 38 1 5.0812 3.3991 0.9519 39 1 3.5394 3.3991 1.8412 40 1 6.1215 1.2515 -0.2537 41 1 7.3463 1.2554 -2.3937 42 1 11.0123 1.1266 -4.3148 43 1 9.1886 2.0669 -6.1627 44 1 7.8089 1.2189 -6.9012 45 1 8.0910 3.3914 -7.9938 46 1 6.5928 3.4134 -7.0330 47 1 8.2420 5.8267 -7.8155 48 1 6.7435 5.8492 -6.8552 49 1 8.2373 6.5515 -6.1896 50 1 3.5713 1.6279 -4.4135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457185906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:38 Heat of formation + Delta-G solvation = -27.664627 kcal Electronic energy + Delta-G solvation = -30093.212121 eV Core-core repulsion = 26121.391853 eV Total energy + Delta-G solvation = -3971.820268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.02189 -38.54865 -37.13883 -36.57691 -34.75408 -33.79315 -32.11116 -31.60117 -30.80898 -29.66610 -28.54365 -25.94860 -25.83051 -24.85455 -23.93379 -22.52203 -22.34961 -21.44479 -20.42337 -19.19955 -17.74697 -16.98752 -16.47503 -15.96038 -15.46947 -15.28392 -14.90961 -14.82363 -14.66285 -14.41190 -14.24591 -14.20684 -13.91336 -13.44623 -13.29893 -13.20070 -12.83665 -12.63854 -12.42929 -12.30225 -11.97513 -11.81878 -11.73227 -11.64533 -11.47419 -11.33381 -11.15555 -11.06225 -11.02327 -10.96786 -10.68287 -10.63494 -10.33924 -10.07890 -9.46868 -9.18888 -9.02940 -8.99512 -8.92937 -8.37694 -7.46340 -7.12037 -6.34213 -4.03631 1.73500 2.10069 3.11215 3.13975 3.24602 3.28300 3.94384 4.13548 4.51731 4.62813 4.74810 4.81712 4.92381 4.98658 5.12312 5.15498 5.24193 5.28903 5.30539 5.35080 5.59844 5.66341 5.67314 5.73339 5.74980 5.77433 5.80758 5.84724 5.90349 5.95274 5.98235 6.00986 6.07893 6.15123 6.16971 6.27450 6.30570 6.33881 6.45843 6.68673 6.86041 7.05279 7.16993 7.27076 7.35091 7.47693 7.75115 7.83404 8.01855 8.38072 8.64099 9.08238 9.51524 9.93618 10.67758 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012435 B = 0.003651 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.226402 B = 7667.987023 C = 8754.847378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.131 3.869 4 N -0.611 5.611 5 C 0.122 3.878 6 C -0.173 4.173 7 C 0.402 3.598 8 C -0.258 4.258 9 C 0.010 3.990 10 C -0.202 4.202 11 C 0.521 3.479 12 O -0.608 6.608 13 N -0.424 5.424 14 C -0.320 4.320 15 H 0.090 0.910 16 C 0.047 3.953 17 N -0.863 5.863 18 Si 0.911 3.089 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.279 1.279 22 C 0.115 3.885 23 C 0.052 3.948 24 O -0.364 6.364 25 C 0.031 3.969 26 C 0.178 3.822 27 N -0.553 5.553 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.126 0.874 41 H 0.171 0.829 42 H 0.269 0.731 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.030 0.970 48 H 0.031 0.969 49 H 0.077 0.923 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.964 2.643 9.035 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.008 3.992 4 N -0.325 5.325 5 C -0.002 4.002 6 C -0.231 4.231 7 C 0.168 3.832 8 C -0.282 4.282 9 C -0.015 4.015 10 C -0.210 4.210 11 C 0.310 3.690 12 O -0.495 6.495 13 N -0.140 5.140 14 C -0.448 4.448 15 H 0.107 0.893 16 C -0.159 4.159 17 N -0.500 5.500 18 Si 0.738 3.262 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.204 1.204 22 C -0.009 4.009 23 C -0.026 4.026 24 O -0.282 6.282 25 C -0.066 4.066 26 C 0.020 3.980 27 N -0.271 5.271 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.144 0.856 41 H 0.188 0.812 42 H 0.080 0.920 43 H 0.131 0.869 44 H 0.090 0.910 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.050 0.950 49 H 0.095 0.905 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.853 2.393 8.864 13.468 hybrid contribution 1.382 0.656 0.304 1.560 sum -8.471 3.049 9.168 12.849 Atomic orbital electron populations 1.21676 0.95586 1.01557 1.01692 1.21911 0.95634 0.98042 1.02202 1.21340 0.79284 0.96173 1.02447 1.46266 1.04926 1.79130 1.02183 1.21403 0.97360 0.96929 0.84464 1.22234 1.01936 0.97460 1.01491 1.18424 0.88293 0.90457 0.86030 1.21191 0.92821 1.14407 0.99782 1.22305 1.02935 0.86405 0.89887 1.20672 0.94561 1.10543 0.95219 1.18053 0.83673 0.80070 0.87170 1.90608 1.68431 1.50878 1.39608 1.43128 1.13319 1.51067 1.06501 1.19390 0.92582 1.33195 0.99649 0.89268 1.25316 0.97552 0.95087 0.97951 1.69847 1.11551 1.28532 1.40030 0.86121 0.80028 0.79880 0.80211 1.19120 1.20837 1.20438 1.21453 1.02031 0.92640 0.84728 1.23054 0.97427 0.88176 0.93895 1.88135 1.76572 1.12700 1.50819 1.22642 0.98793 0.87500 0.97700 1.22437 0.91022 0.90538 0.93984 1.67164 1.39934 1.22685 0.97292 0.92435 0.92842 0.93027 0.91500 0.92596 0.91911 0.89592 0.90906 0.90260 0.91838 0.91972 0.92710 0.85638 0.81207 0.92049 0.86886 0.90968 0.94247 0.94212 0.95171 0.95009 0.90478 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.14 -1.53 6.26 -26.73 -0.17 -1.69 16 3 C 0.13 1.54 5.46 -4.04 -0.02 1.52 16 4 N -0.61 -8.22 2.57 -173.86 -0.45 -8.67 16 5 C 0.12 1.29 5.96 -4.04 -0.02 1.26 16 6 C -0.17 -1.72 10.24 37.16 0.38 -1.34 16 7 C 0.40 6.85 7.36 -155.26 -1.14 5.71 16 8 C -0.26 -4.51 9.20 -39.65 -0.36 -4.88 16 9 C 0.01 0.21 7.79 -39.27 -0.31 -0.10 16 10 C -0.20 -4.48 5.54 -104.82 -0.58 -5.06 16 11 C 0.52 13.02 7.39 -12.52 -0.09 12.93 16 12 O -0.61 -16.25 16.38 5.26 0.09 -16.17 16 13 N -0.42 -10.60 2.46 -116.03 -0.29 -10.88 16 14 C -0.32 -7.90 5.82 -15.00 -0.09 -7.99 16 15 H 0.09 2.20 6.19 -52.49 -0.32 1.87 16 16 C 0.05 1.14 5.01 -17.45 -0.09 1.05 16 17 N -0.86 -22.16 11.41 55.50 0.63 -21.52 16 18 Si 0.91 19.35 29.58 -169.99 -5.03 14.32 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.12 2.73 5.35 -4.04 -0.02 2.71 16 23 C 0.05 1.08 6.26 37.16 0.23 1.32 16 24 O -0.36 -7.73 10.34 -35.23 -0.36 -8.10 16 25 C 0.03 0.50 11.01 101.05 1.11 1.61 16 26 C 0.18 3.59 10.77 -17.10 -0.18 3.40 16 27 N -0.55 -10.27 9.04 -12.12 -0.11 -10.38 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 34 H 0.09 1.16 7.28 -51.93 -0.38 0.78 16 35 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.08 0.84 5.94 -51.93 -0.31 0.53 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.13 1.87 5.98 -52.49 -0.31 1.56 16 41 H 0.17 3.72 5.47 -52.48 -0.29 3.43 16 42 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 43 H 0.11 2.85 5.61 -51.93 -0.29 2.56 16 44 H 0.07 1.73 7.47 -51.93 -0.39 1.34 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 50 H 0.15 2.96 7.96 -52.48 -0.42 2.55 16 LS Contribution 404.64 15.07 6.10 6.10 Total: -1.00 -29.60 404.64 -8.58 -38.19 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -8.18 Total: 7.64 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -0.99 Total: 9.49 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.21 Total: -51.46 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.28 Total: -24.26 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.60 -8.58 -38.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457185906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.522 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds