Wall clock time and date at job start Tue Mar 31 2020 19:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00591 * 2 1 4 4 N 1.46900 * 109.47062 * 124.21459 * 3 2 1 5 5 C 1.46906 * 111.00200 * 302.10766 * 4 3 2 6 6 C 1.50700 * 109.47380 * 288.77106 * 5 4 3 7 7 H 1.07997 * 119.99470 * 358.63105 * 6 5 4 8 8 C 1.37873 * 120.00264 * 178.63497 * 6 5 4 9 9 N 1.31522 * 119.99592 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00358 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47082 * 89.99814 * 10 8 6 12 12 H 1.48498 * 109.47301 * 210.00271 * 10 8 6 13 13 H 1.48501 * 109.47072 * 329.99936 * 10 8 6 14 14 C 1.46897 * 111.00321 * 66.06557 * 4 3 2 15 15 N 1.46502 * 109.47101 * 81.04366 * 14 4 3 16 16 C 1.47251 * 125.58347 * 90.00703 * 15 14 4 17 17 C 1.53521 * 103.53916 * 180.02562 * 16 15 14 18 18 C 1.52589 * 110.48745 * 119.35782 * 17 16 15 19 19 N 1.47116 * 108.95385 * 122.31205 * 18 17 16 20 20 C 1.46923 * 111.01433 * 61.56858 * 19 18 17 21 21 C 1.53113 * 109.58407 * 297.71912 * 20 19 18 22 22 C 1.52911 * 110.31695 * 240.82561 * 17 16 15 23 23 C 1.53535 * 108.53005 * 297.40735 * 22 17 16 24 24 C 1.46950 * 110.91451 * 297.78989 * 19 18 17 25 25 O 1.45095 * 104.60434 * 359.94665 * 17 16 15 26 26 C 1.33984 * 109.20534 * 0.04923 * 25 17 16 27 27 O 1.21512 * 123.09019 * 179.97438 * 26 25 17 28 28 H 1.07997 * 120.00736 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99867 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99867 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47021 * 4.22100 * 3 2 1 32 32 H 1.08999 * 109.47685 * 244.21950 * 3 2 1 33 33 H 1.09004 * 109.46646 * 48.76731 * 5 4 3 34 34 H 1.09003 * 109.47198 * 168.76463 * 5 4 3 35 35 H 0.96997 * 119.99622 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.46753 * 321.04345 * 14 4 3 37 37 H 1.08993 * 109.47360 * 201.05105 * 14 4 3 38 38 H 1.08997 * 110.61189 * 61.54135 * 16 15 14 39 39 H 1.09009 * 110.60559 * 298.56906 * 16 15 14 40 40 H 1.08996 * 109.55827 * 242.15944 * 18 17 16 41 41 H 1.09008 * 109.55605 * 2.47279 * 18 17 16 42 42 H 1.09003 * 109.45479 * 57.75707 * 20 19 18 43 43 H 1.09001 * 109.45180 * 177.70955 * 20 19 18 44 44 H 1.09000 * 110.38988 * 240.27239 * 21 20 19 45 45 H 1.09007 * 108.77676 * 119.87088 * 21 20 19 46 46 H 1.08997 * 110.25528 * 58.26503 * 22 17 16 47 47 H 1.08997 * 109.57964 * 60.45996 * 23 22 17 48 48 H 1.09000 * 109.57415 * 180.85234 * 23 22 17 49 49 H 1.09003 * 109.45808 * 182.06004 * 24 19 18 50 50 H 1.08997 * 109.46229 * 302.03147 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9828 1.3396 1.1453 5 6 2.2550 1.1689 2.4099 6 6 1.4530 2.4114 2.6997 7 1 1.4984 3.2530 2.0244 8 6 0.6614 2.4738 3.8268 9 7 0.6066 1.4490 4.6494 10 14 -0.3322 4.0142 4.1863 11 1 -1.6713 3.8981 3.5550 12 1 -0.4890 4.1706 5.6547 13 1 0.3739 5.1986 3.6350 14 6 4.0379 0.3272 1.0043 15 7 5.0857 0.8345 0.1150 16 6 6.2723 1.5977 0.5369 17 6 7.0137 1.8666 -0.7803 18 6 7.1368 3.3673 -1.0271 19 7 8.5601 3.7142 -1.1622 20 6 9.1646 3.0221 -2.3085 21 6 9.0972 1.5085 -2.0880 22 6 8.4055 1.2342 -0.7448 23 6 9.2136 1.8963 0.3803 24 6 9.2925 3.4156 0.0763 25 8 6.1906 1.2402 -1.7979 26 6 5.1216 0.6796 -1.2165 27 8 4.2634 0.0854 -1.8386 28 1 -0.5401 -0.9352 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3577 2.1322 0.0756 32 1 2.6323 1.3962 -0.9253 33 1 1.5839 0.3136 2.3303 34 1 2.9662 0.9987 3.2183 35 1 0.0494 1.4928 5.4421 36 1 3.6132 -0.5839 0.5828 37 1 4.4657 0.1096 1.9829 38 1 6.8906 1.0044 1.2104 39 1 5.9776 2.5345 1.0100 40 1 6.6084 3.6310 -1.9433 41 1 6.7067 3.9119 -0.1865 42 1 8.6208 3.2812 -3.2170 43 1 10.2060 3.3279 -2.4092 44 1 10.1000 1.0814 -2.0763 45 1 8.5172 1.0617 -2.8956 46 1 8.3279 0.1608 -0.5723 47 1 8.7142 1.7309 1.3349 48 1 10.2155 1.4680 0.4110 49 1 10.3345 3.7149 -0.0369 50 1 8.8449 3.9651 0.9044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495905953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:04 Heat of formation + Delta-G solvation = -39.439950 kcal Electronic energy + Delta-G solvation = -31055.603253 eV Core-core repulsion = 27083.272369 eV Total energy + Delta-G solvation = -3972.330884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.28092 -40.95183 -39.12414 -38.01581 -36.10306 -34.80649 -33.57408 -33.24407 -32.21351 -31.55118 -29.42168 -27.98112 -26.83788 -25.53764 -24.33940 -24.00528 -23.42854 -22.95711 -22.10568 -20.48944 -18.96370 -18.43508 -18.35395 -18.11050 -17.85783 -17.14013 -16.99040 -16.70566 -16.37118 -16.16184 -15.92050 -15.52016 -15.34750 -14.76346 -14.63896 -14.23418 -14.07123 -14.01615 -13.89205 -13.76962 -13.38934 -13.21752 -13.09739 -13.02500 -12.91343 -12.74729 -12.64100 -12.61638 -12.41076 -12.24205 -12.08211 -11.99772 -11.95539 -11.73003 -11.38384 -11.25392 -11.14171 -10.58493 -10.21981 -10.14447 -9.28033 -9.12480 -8.15863 -6.23699 1.32862 1.42331 1.43798 1.44447 1.54239 1.62393 2.32681 2.43573 2.90867 3.10571 3.17455 3.25085 3.39874 3.47280 3.72998 3.87529 3.92552 4.01980 4.11990 4.13375 4.21071 4.24392 4.30800 4.35669 4.38456 4.44271 4.53503 4.59140 4.67868 4.77942 4.90681 4.92184 5.00249 5.01239 5.02767 5.05853 5.14144 5.15424 5.17953 5.20311 5.28094 5.38589 5.67072 5.69231 5.85327 5.98384 6.04424 6.09805 6.21648 6.37959 6.52178 6.88226 6.94179 7.44721 8.94090 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.003354 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.988159 B = 8345.184460 C = 9382.197000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.184 4.184 3 C 0.101 3.899 4 N -0.546 5.546 5 C 0.214 3.786 6 C -0.513 4.513 7 H 0.055 0.945 8 C 0.011 3.989 9 N -0.929 5.929 10 Si 0.957 3.043 11 H -0.278 1.278 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.306 3.694 15 N -0.609 5.609 16 C 0.079 3.921 17 C 0.068 3.932 18 C 0.056 3.944 19 N -0.526 5.526 20 C 0.050 3.950 21 C -0.143 4.143 22 C -0.088 4.088 23 C -0.142 4.142 24 C 0.044 3.956 25 O -0.329 6.329 26 C 0.637 3.363 27 O -0.565 6.565 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.064 0.936 33 H -0.014 1.014 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.131 1.396 -8.509 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.203 4.203 3 C -0.027 4.027 4 N -0.271 5.271 5 C 0.088 3.912 6 C -0.552 4.552 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.570 5.570 10 Si 0.783 3.217 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.095 3.905 15 N -0.356 5.356 16 C -0.043 4.043 17 C 0.029 3.971 18 C -0.073 4.073 19 N -0.246 5.246 20 C -0.078 4.078 21 C -0.182 4.182 22 C -0.107 4.107 23 C -0.181 4.181 24 C -0.084 4.084 25 O -0.239 6.239 26 C 0.392 3.608 27 O -0.453 6.453 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.004 0.996 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.980 2.074 -8.963 22.908 hybrid contribution -1.586 -1.273 0.418 2.076 sum 19.394 0.801 -8.544 21.208 Atomic orbital electron populations 1.23829 0.95774 1.01932 0.99927 1.23385 0.96990 0.99238 1.00713 1.21070 0.94328 0.94344 0.92929 1.62019 1.13316 1.48170 1.03578 1.19385 0.91653 0.95652 0.84524 1.21310 1.25520 1.00923 1.07423 0.92721 1.25691 0.97878 0.99209 0.95975 1.70051 1.40993 1.31960 1.13975 0.85560 0.78912 0.80016 0.77203 1.20403 1.20772 1.19182 1.21707 0.84899 0.90794 0.93092 1.48317 1.24644 1.56885 1.05731 1.23231 0.85492 0.98975 0.96628 1.23863 0.91820 0.96816 0.84577 1.22597 0.91363 0.89090 1.04273 1.62705 1.00917 1.55781 1.05161 1.22280 1.01278 0.90915 0.93309 1.22193 1.01642 0.98536 0.95864 1.21457 0.90871 1.00295 0.98063 1.22712 1.01320 0.96891 0.97146 1.22773 1.00210 0.93958 0.91425 1.87265 1.33973 1.67385 1.35255 1.18760 0.81344 0.78463 0.82279 1.90982 1.39313 1.47014 1.68040 0.87487 0.88978 0.88316 0.91835 0.91754 0.99648 0.96819 0.92811 0.92628 0.87471 0.86771 0.88161 0.90227 0.87836 0.91375 0.88342 0.89004 0.92869 0.89946 0.89994 0.88605 0.88421 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.71 14.32 67.79 0.97 -5.74 16 2 C -0.18 -7.40 7.35 25.65 0.19 -7.21 16 3 C 0.10 4.26 5.59 85.56 0.48 4.74 16 4 N -0.55 -22.88 4.76 -917.73 -4.37 -27.25 16 5 C 0.21 10.61 4.55 85.56 0.39 11.00 16 6 C -0.51 -27.86 8.59 25.60 0.22 -27.64 16 7 H 0.05 2.99 7.50 -2.91 -0.02 2.97 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -53.60 13.29 21.45 0.28 -53.31 16 10 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 C 0.31 10.70 5.71 170.81 0.98 11.68 16 15 N -0.61 -18.80 3.18 -962.77 -3.06 -21.86 16 16 C 0.08 1.74 6.39 86.41 0.55 2.30 16 17 C 0.07 1.42 0.80 -10.78 -0.01 1.41 16 18 C 0.06 1.08 5.66 86.13 0.49 1.57 16 19 N -0.53 -8.09 5.24 -891.57 -4.67 -12.77 16 20 C 0.05 0.70 6.07 86.34 0.52 1.22 16 21 C -0.14 -2.07 5.66 30.82 0.17 -1.90 16 22 C -0.09 -1.35 2.56 -10.46 -0.03 -1.37 16 23 C -0.14 -1.41 5.69 31.51 0.18 -1.23 16 24 C 0.04 0.48 6.12 87.03 0.53 1.01 16 25 O -0.33 -9.84 9.91 -49.30 -0.49 -10.33 16 26 C 0.64 22.41 8.19 129.90 1.06 23.48 16 27 O -0.57 -24.14 16.06 19.63 0.32 -23.82 16 28 H 0.11 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.09 3.55 7.84 -2.91 -0.02 3.52 16 30 H 0.10 3.89 6.76 -2.91 -0.02 3.87 16 31 H 0.06 2.86 6.96 -2.39 -0.02 2.84 16 32 H 0.06 2.76 5.78 -2.39 -0.01 2.75 16 33 H -0.01 -0.77 6.65 -2.39 -0.02 -0.78 16 34 H 0.01 0.71 7.66 -2.39 -0.02 0.69 16 35 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.06 2.06 5.91 -2.38 -0.01 2.04 16 37 H 0.11 3.39 7.56 -2.39 -0.02 3.37 16 38 H 0.11 1.92 6.58 -2.39 -0.02 1.91 16 39 H 0.10 2.22 7.10 -2.38 -0.02 2.20 16 40 H 0.08 1.80 7.95 -2.39 -0.02 1.78 16 41 H 0.10 1.92 7.05 -2.38 -0.02 1.90 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.05 1.00 7.81 -2.38 -0.02 0.98 16 46 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 0.75 6.64 -2.39 -0.02 0.74 16 48 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -67.68 381.11 -1.87 -69.55 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.93 Total: 20.06 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 7.16 Total: 14.35 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -11.82 Total: -115.19 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.17 Total: -34.15 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -67.68 -1.87 -69.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495905953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.111 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds