Wall clock time and date at job start Tue Mar 31 2020 18:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47208 * 2 1 4 4 H 1.08998 * 109.47139 * 54.99762 * 3 2 1 5 5 N 1.46500 * 109.46780 * 295.00076 * 3 2 1 6 6 C 1.34770 * 120.00063 * 85.00103 * 5 3 2 7 7 O 1.21603 * 120.00516 * 359.97438 * 6 5 3 8 8 C 1.47431 * 119.99929 * 179.97438 * 6 5 3 9 9 C 1.41293 * 126.41437 * 0.04241 * 8 6 5 10 10 N 1.30448 * 108.02361 * 179.70632 * 9 8 6 11 11 N 1.39944 * 108.89724 * 0.40720 * 10 9 8 12 12 C 1.46491 * 125.75406 * 179.85047 * 11 10 9 13 13 C 1.50702 * 109.46957 * 269.68786 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.34263 * 108.48668 * 359.58371 * 11 10 9 22 22 C 1.50701 * 126.28871 * 180.26134 * 21 11 10 23 23 C 1.52997 * 109.46818 * 175.00081 * 3 2 1 24 24 H 1.09006 * 109.48233 * 59.97725 * 23 3 2 25 25 C 1.53100 * 109.47822 * 179.97438 * 23 3 2 26 26 C 1.53176 * 109.16417 * 177.59253 * 25 23 3 27 27 C 1.53181 * 109.03409 * 303.02036 * 26 25 23 28 28 C 1.53088 * 109.16657 * 56.98096 * 27 26 25 29 29 O 1.42898 * 109.48275 * 299.94083 * 23 3 2 30 30 H 1.08994 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46893 * 300.00307 * 1 2 3 32 32 H 1.09002 * 109.47013 * 59.99999 * 1 2 3 33 33 H 1.09000 * 109.46893 * 239.99693 * 2 1 3 34 34 H 1.09002 * 109.47013 * 120.00001 * 2 1 3 35 35 H 0.97010 * 119.99367 * 264.99976 * 5 3 2 36 36 H 1.07998 * 125.98987 * 0.02562 * 9 8 6 37 37 H 1.09004 * 109.47166 * 149.69052 * 12 11 10 38 38 H 1.08994 * 109.47507 * 29.68759 * 12 11 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46762 * 89.99560 * 22 21 11 41 41 H 1.08991 * 109.47344 * 210.00318 * 22 21 11 42 42 H 1.08999 * 109.47223 * 330.00739 * 22 21 11 43 43 H 1.09000 * 109.51529 * 297.49650 * 25 23 3 44 44 H 1.08995 * 109.52175 * 57.68093 * 25 23 3 45 45 H 1.09000 * 109.54553 * 62.88099 * 26 25 23 46 46 H 1.08988 * 109.54306 * 183.15369 * 26 25 23 47 47 H 1.09001 * 109.52271 * 176.88561 * 27 26 25 48 48 H 1.09004 * 109.51855 * 297.07205 * 27 26 25 49 49 H 1.08996 * 109.48058 * 62.37089 * 28 27 26 50 50 H 1.08998 * 109.48633 * 182.40942 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3670 7 8 -0.3416 2.6319 -0.4320 8 6 0.0454 3.3239 -2.6266 9 6 0.8356 3.4398 -3.7921 10 7 0.1396 4.0819 -4.6893 11 7 -1.1072 4.4110 -4.1457 12 6 -2.1764 5.1379 -4.8345 13 6 -2.0164 6.6164 -4.5909 14 1 -1.1997 6.9785 -3.9841 15 6 -2.9092 7.5075 -5.1479 16 7 -3.9035 7.0666 -5.8872 17 14 -2.7063 9.3407 -4.8524 18 1 -1.5178 9.5751 -3.9936 19 1 -2.5216 10.0342 -6.1525 20 1 -3.9180 9.8703 -4.1766 21 6 -1.1603 3.9431 -2.8883 22 6 -2.3227 4.0702 -1.9377 23 6 3.5649 1.4442 0.1257 24 1 3.9996 0.9048 -0.7159 25 6 4.0755 2.8876 0.1251 26 6 5.5959 2.8831 0.3116 27 6 5.9377 2.1460 1.6102 28 6 5.3552 0.7314 1.5535 29 8 3.9431 0.8066 1.3473 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.2721 2.1230 -1.9978 36 1 1.8380 3.0586 -3.9198 37 1 -3.1433 4.8093 -4.4530 38 1 -2.1210 4.9378 -5.9044 39 1 -4.5318 7.6934 -6.2788 40 1 -2.9839 3.2118 -2.0555 41 1 -1.9521 4.1056 -0.9133 42 1 -2.8729 4.9853 -2.1568 43 1 3.8264 3.3615 -0.8243 44 1 3.6099 3.4390 0.9418 45 1 6.0651 2.3746 -0.5306 46 1 5.9593 3.9091 0.3682 47 1 7.0204 2.0898 1.7230 48 1 5.5097 2.6826 2.4570 49 1 5.8135 0.1823 0.7310 50 1 5.5586 0.2166 2.4924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892594189.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:24 Heat of formation + Delta-G solvation = -36.574674 kcal Electronic energy + Delta-G solvation = -29684.400990 eV Core-core repulsion = 25712.194354 eV Total energy + Delta-G solvation = -3972.206636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.84670 -40.07878 -38.75260 -35.66368 -34.00169 -33.90367 -32.42033 -31.88347 -31.33290 -30.94536 -27.74029 -26.85688 -26.35989 -24.65430 -23.50552 -22.82397 -22.20394 -20.86992 -20.48211 -19.84537 -18.96260 -17.25287 -16.83692 -16.75222 -16.09559 -15.63014 -15.26857 -15.09375 -14.85251 -14.69906 -14.49051 -14.33279 -14.03223 -13.73841 -13.35838 -13.16772 -12.99834 -12.78979 -12.55479 -12.48516 -12.36931 -12.05557 -11.80259 -11.76173 -11.55455 -11.47268 -11.38762 -11.25303 -11.09547 -10.92303 -10.87255 -10.71249 -10.46936 -10.37377 -10.16408 -9.91707 -9.74228 -9.34510 -8.85059 -8.72451 -8.58003 -7.90785 -6.34524 -4.42352 2.20715 2.79736 2.96402 3.16343 3.24415 3.28482 3.40944 3.87725 3.96275 4.23740 4.29308 4.48971 4.55537 4.61565 4.82458 4.85680 4.99420 5.07109 5.09695 5.15422 5.26945 5.27989 5.28988 5.42278 5.48730 5.55917 5.61492 5.62079 5.74615 5.76498 5.79950 5.84477 5.95581 5.97739 6.04254 6.09534 6.10818 6.26366 6.48260 6.58614 6.60557 6.66908 6.79230 6.89727 6.94125 7.16475 7.55891 7.75002 7.76647 7.80002 8.38263 8.62942 8.65935 9.24758 10.73675 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.002578 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.878281 B =10857.616444 C =11694.230956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.158 3.842 4 H 0.095 0.905 5 N -0.727 5.727 6 C 0.607 3.393 7 O -0.547 6.547 8 C -0.332 4.332 9 C 0.056 3.944 10 N -0.296 5.296 11 N -0.314 5.314 12 C 0.251 3.749 13 C -0.540 4.540 14 H 0.066 0.934 15 C 0.067 3.933 16 N -0.889 5.889 17 Si 0.908 3.092 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.166 3.834 22 C -0.098 4.098 23 C 0.087 3.913 24 H 0.061 0.939 25 C -0.151 4.151 26 C -0.123 4.123 27 C -0.158 4.158 28 C 0.063 3.937 29 O -0.372 6.372 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.395 0.605 36 H 0.174 0.826 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.049 0.951 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.568 -12.953 12.482 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.053 3.947 4 H 0.113 0.887 5 N -0.380 5.380 6 C 0.398 3.602 7 O -0.425 6.425 8 C -0.348 4.348 9 C -0.131 4.131 10 N -0.116 5.116 11 N -0.091 5.091 12 C 0.134 3.866 13 C -0.578 4.578 14 H 0.084 0.916 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.205 1.205 21 C 0.029 3.971 22 C -0.156 4.156 23 C 0.028 3.972 24 H 0.079 0.921 25 C -0.189 4.189 26 C -0.160 4.160 27 C -0.195 4.195 28 C -0.014 4.014 29 O -0.290 6.290 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.229 0.771 36 H 0.191 0.809 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.067 0.933 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.581 -12.429 11.863 23.195 hybrid contribution 0.781 0.861 0.138 1.171 sum 16.363 -11.568 12.001 23.358 Atomic orbital electron populations 1.21801 0.94709 1.00222 1.03424 1.21889 0.97114 0.95603 1.02050 1.20703 0.91442 0.94188 0.88356 0.88681 1.45639 1.17256 1.59483 1.15659 1.17185 0.80466 0.76239 0.86302 1.90708 1.51247 1.60119 1.40475 1.19676 0.97562 1.20205 0.97311 1.23700 0.99392 0.98768 0.91227 1.77133 0.92598 1.18869 1.23001 1.49367 1.12343 1.38418 1.08991 1.19848 0.81620 0.91198 0.93975 1.21296 1.13432 0.89695 1.33392 0.91603 1.24931 0.94579 0.99877 0.94305 1.69925 1.14830 1.35528 1.32376 0.86274 0.78364 0.83633 0.78286 1.19517 1.20576 1.20530 1.21474 0.96137 0.92448 0.87046 1.20613 0.93873 1.03115 0.97974 1.22221 0.94718 0.92774 0.87444 0.92109 1.22212 0.95829 0.97137 1.03677 1.21593 0.95971 1.01033 0.97440 1.22205 1.01171 0.97255 0.98917 1.22563 0.81348 0.95922 1.01565 1.87904 1.22396 1.78986 1.39744 0.94032 0.92197 0.92026 0.92395 0.90725 0.77078 0.80928 0.92570 0.92530 0.92159 0.90549 0.88546 0.89986 0.90351 0.90764 0.91844 0.91344 0.91010 0.90966 0.93254 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.51 37.16 0.32 -1.53 16 2 C -0.13 -1.39 5.53 -26.73 -0.15 -1.54 16 3 C 0.16 1.75 2.05 -67.93 -0.14 1.61 16 4 H 0.10 1.27 7.58 -51.93 -0.39 0.88 16 5 N -0.73 -8.52 4.37 -54.88 -0.24 -8.75 16 6 C 0.61 9.54 6.38 -12.52 -0.08 9.46 16 7 O -0.55 -9.74 11.97 5.27 0.06 -9.68 16 8 C -0.33 -5.88 6.13 -105.06 -0.64 -6.53 16 9 C 0.06 0.95 11.50 -16.98 -0.20 0.76 16 10 N -0.30 -6.28 12.50 30.86 0.39 -5.90 16 11 N -0.31 -7.04 3.56 -57.78 -0.21 -7.24 16 12 C 0.25 6.21 5.78 -5.20 -0.03 6.18 16 13 C -0.54 -14.47 9.39 -34.44 -0.32 -14.79 16 14 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 15 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -24.51 13.29 55.43 0.74 -23.78 16 17 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.17 3.33 7.01 -81.60 -0.57 2.76 16 22 C -0.10 -1.75 9.34 36.01 0.34 -1.41 16 23 C 0.09 0.79 2.27 -26.68 -0.06 0.73 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 C -0.15 -1.32 5.22 -26.59 -0.14 -1.46 16 26 C -0.12 -0.88 6.03 -26.55 -0.16 -1.04 16 27 C -0.16 -1.04 6.14 -26.59 -0.16 -1.20 16 28 C 0.06 0.44 6.84 37.20 0.25 0.70 16 29 O -0.37 -3.61 9.65 -35.23 -0.34 -3.95 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 32 H 0.06 0.92 5.64 -51.93 -0.29 0.62 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.79 7.54 -51.93 -0.39 0.40 16 35 H 0.40 3.73 7.35 -40.82 -0.30 3.43 16 36 H 0.17 2.08 7.50 -52.49 -0.39 1.68 16 37 H 0.06 1.38 7.62 -51.93 -0.40 0.99 16 38 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.10 1.69 6.50 -51.93 -0.34 1.35 16 42 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 43 H 0.08 0.68 7.53 -51.93 -0.39 0.29 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.48 8.14 -51.94 -0.42 0.05 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -30.18 396.41 -8.81 -38.99 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.32 Total: 4.23 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.84 Total: -5.63 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.68 Total: -45.67 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.28 Total: -13.63 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.18 -8.81 -38.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892594189.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.418 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds