Wall clock time and date at job start Tue Mar 31 2020 18:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47208 * 2 1 4 4 H 1.08998 * 109.47139 * 54.99762 * 3 2 1 5 5 C 1.52997 * 109.46818 * 175.00081 * 3 2 1 6 6 O 1.42894 * 109.47384 * 55.00056 * 5 3 2 7 7 C 1.42901 * 114.00331 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.47499 * 179.97438 * 7 6 5 9 9 C 1.53000 * 117.49988 * 243.75170 * 8 7 6 10 10 C 1.53000 * 117.49879 * 175.08892 * 8 7 6 11 11 N 1.46500 * 109.46780 * 295.00076 * 3 2 1 12 12 C 1.34770 * 120.00063 * 85.00103 * 11 3 2 13 13 O 1.21603 * 120.00516 * 359.97438 * 12 11 3 14 14 C 1.47431 * 119.99929 * 179.97438 * 12 11 3 15 15 C 1.41293 * 126.41437 * 0.04241 * 14 12 11 16 16 N 1.30448 * 108.02361 * 179.70632 * 15 14 12 17 17 N 1.39944 * 108.89724 * 0.40720 * 16 15 14 18 18 C 1.46491 * 125.75406 * 179.85047 * 17 16 15 19 19 C 1.50702 * 109.46957 * 269.68786 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 C 1.34263 * 108.48668 * 359.58371 * 17 16 15 28 28 C 1.50701 * 126.28871 * 180.26134 * 27 17 16 29 29 H 1.09000 * 109.46893 * 300.00307 * 1 2 3 30 30 H 1.09002 * 109.47013 * 59.99999 * 1 2 3 31 31 H 1.08994 * 109.47119 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46893 * 239.99693 * 2 1 3 33 33 H 1.09002 * 109.47013 * 120.00001 * 2 1 3 34 34 H 1.09005 * 109.46614 * 175.00008 * 5 3 2 35 35 H 1.08999 * 109.47083 * 294.99558 * 5 3 2 36 36 H 1.09002 * 109.47302 * 300.00221 * 7 6 5 37 37 H 1.09004 * 109.46994 * 59.99940 * 7 6 5 38 38 H 1.09001 * 115.54768 * 29.42155 * 8 7 6 39 39 H 1.08997 * 117.50020 * 359.97438 * 9 8 7 40 40 H 1.08993 * 117.49985 * 145.02346 * 9 8 7 41 41 H 1.08999 * 117.49818 * 214.98568 * 10 8 7 42 42 H 1.09006 * 117.49608 * 0.02562 * 10 8 7 43 43 H 0.97010 * 119.99367 * 264.99976 * 11 3 2 44 44 H 1.07998 * 125.98947 * 359.93069 * 15 14 12 45 45 H 1.09004 * 109.47166 * 149.69052 * 18 17 16 46 46 H 1.08994 * 109.47507 * 29.68759 * 18 17 16 47 47 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.46762 * 89.99560 * 28 27 17 49 49 H 1.08991 * 109.47344 * 210.00318 * 28 27 17 50 50 H 1.08999 * 109.47223 * 330.00739 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4442 0.1257 6 8 4.1293 0.6403 -0.9121 7 6 5.5566 0.5750 -0.8856 8 6 6.0482 -0.3078 -2.0345 9 6 6.7848 -1.5980 -1.6687 10 6 7.5596 -0.4119 -2.2485 11 7 1.6525 2.0974 -1.2518 12 6 0.4352 2.6643 -1.3670 13 8 -0.3416 2.6319 -0.4320 14 6 0.0454 3.3239 -2.6266 15 6 0.8356 3.4398 -3.7921 16 7 0.1396 4.0819 -4.6893 17 7 -1.1072 4.4110 -4.1457 18 6 -2.1764 5.1379 -4.8345 19 6 -2.0164 6.6164 -4.5909 20 1 -1.1997 6.9785 -3.9841 21 6 -2.9092 7.5075 -5.1479 22 7 -3.9035 7.0666 -5.8872 23 14 -2.7063 9.3407 -4.8524 24 1 -1.8465 9.9213 -5.9148 25 1 -4.0382 9.9969 -4.8800 26 1 -2.0731 9.5615 -3.5274 27 6 -1.1603 3.9431 -2.8883 28 6 -2.3227 4.0702 -1.9377 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9355 2.4654 0.0366 35 1 3.8499 1.0377 1.0960 36 1 5.9684 1.5782 -0.9959 37 1 5.8833 0.1506 0.0638 38 1 5.4122 -0.3249 -2.9195 39 1 6.9195 -1.8177 -0.6097 40 1 6.6337 -2.4638 -2.3133 41 1 7.9179 -0.4979 -3.2744 42 1 8.2037 0.1482 -1.5706 43 1 2.2721 2.1230 -1.9978 44 1 1.8385 3.0599 -3.9193 45 1 -3.1433 4.8093 -4.4530 46 1 -2.1210 4.9378 -5.9044 47 1 -4.5318 7.6934 -6.2788 48 1 -2.9839 3.2118 -2.0555 49 1 -1.9521 4.1056 -0.9133 50 1 -2.8729 4.9853 -2.1568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892690844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:45 Heat of formation + Delta-G solvation = -3.631932 kcal Electronic energy + Delta-G solvation = -28909.762180 eV Core-core repulsion = 24938.984048 eV Total energy + Delta-G solvation = -3970.778132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76072 -39.47450 -38.51734 -37.04010 -35.16435 -33.89073 -32.41148 -31.83794 -30.94829 -29.45559 -27.40442 -26.82715 -26.45387 -23.71979 -23.32816 -22.77439 -22.20146 -21.06274 -20.65675 -19.79495 -18.88769 -17.27487 -17.04243 -16.73891 -16.50138 -15.79783 -15.37865 -15.23875 -15.02404 -14.75995 -14.47541 -14.25680 -13.91505 -13.80095 -13.28834 -13.07109 -12.79986 -12.58589 -12.49214 -12.41303 -12.31147 -12.01792 -11.93805 -11.75094 -11.51557 -11.43553 -11.27238 -11.10225 -11.05419 -10.88520 -10.75894 -10.72293 -10.58617 -10.35236 -10.11426 -9.91378 -9.81497 -9.28690 -8.78889 -8.70023 -8.53728 -7.85616 -6.32359 -4.40146 2.25342 2.85231 3.10443 3.19030 3.23612 3.25554 3.32176 3.49991 3.65127 3.99540 4.25381 4.38882 4.49216 4.57211 4.69388 4.85762 4.92095 5.01700 5.03869 5.12534 5.17890 5.23169 5.24299 5.26990 5.31604 5.37271 5.49008 5.53177 5.66296 5.70173 5.75851 5.81318 5.85063 5.97834 6.01900 6.08382 6.13395 6.31541 6.51049 6.59329 6.64320 6.73895 6.83056 6.89473 6.93006 7.21314 7.58177 7.79121 7.81973 7.88436 8.43089 8.65425 8.71680 9.26678 10.75764 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.002342 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.912995 B =11953.447021 C =12936.345951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.154 3.846 4 H 0.099 0.901 5 C 0.054 3.946 6 O -0.379 6.379 7 C 0.093 3.907 8 C -0.152 4.152 9 C -0.178 4.178 10 C -0.175 4.175 11 N -0.725 5.725 12 C 0.604 3.396 13 O -0.553 6.553 14 C -0.332 4.332 15 C 0.058 3.942 16 N -0.297 5.297 17 N -0.315 5.315 18 C 0.251 3.749 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.889 5.889 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.271 1.271 27 C 0.164 3.836 28 C -0.097 4.097 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.401 0.599 44 H 0.174 0.826 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.269 0.731 48 H 0.075 0.925 49 H 0.096 0.904 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.609 -15.089 11.686 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.049 3.951 4 H 0.117 0.883 5 C -0.023 4.023 6 O -0.298 6.298 7 C 0.017 3.983 8 C -0.170 4.170 9 C -0.215 4.215 10 C -0.212 4.212 11 N -0.378 5.378 12 C 0.395 3.605 13 O -0.433 6.433 14 C -0.347 4.347 15 C -0.129 4.129 16 N -0.117 5.117 17 N -0.092 5.092 18 C 0.134 3.866 19 C -0.578 4.578 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.196 1.196 27 C 0.027 3.973 28 C -0.155 4.155 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.133 0.867 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.236 0.764 44 H 0.191 0.809 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.114 0.886 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.648 -14.587 10.793 24.626 hybrid contribution 0.697 0.817 0.536 1.201 sum 17.345 -13.770 11.329 24.876 Atomic orbital electron populations 1.21820 0.94858 1.00200 1.03410 1.21837 0.96829 0.95648 1.02235 1.21002 0.91144 0.94233 0.88707 0.88322 1.22856 0.93547 0.94876 0.91054 1.87900 1.19386 1.70605 1.51887 1.21987 0.81419 0.98332 0.96578 1.22147 0.94726 0.99397 1.00739 1.23077 1.04212 0.92455 1.01772 1.22990 0.93369 1.02274 1.02599 1.45714 1.17155 1.58701 1.16209 1.17252 0.80665 0.76334 0.86272 1.90690 1.51391 1.60642 1.40528 1.19707 0.97507 1.20101 0.97405 1.23724 0.99418 0.98592 0.91197 1.77134 0.92593 1.18981 1.23011 1.49356 1.12363 1.38466 1.08991 1.19832 0.81642 0.91161 0.93967 1.21260 1.13400 0.89728 1.33412 0.91672 1.24931 0.94582 0.99855 0.94343 1.69918 1.14816 1.35589 1.32357 0.86323 0.77646 0.83584 0.78973 1.20265 1.20800 1.19599 1.21471 0.96161 0.92576 0.87069 1.20600 0.93865 1.03048 0.97966 0.92368 0.91902 0.94069 0.91130 0.91967 0.92480 0.92044 0.92849 0.93321 0.86652 0.88771 0.88609 0.88347 0.88731 0.76439 0.80865 0.92600 0.92557 0.92129 0.90613 0.88587 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.51 37.16 0.32 -1.53 16 2 C -0.13 -1.36 5.33 -26.73 -0.14 -1.50 16 3 C 0.15 1.64 2.66 -67.93 -0.18 1.46 16 4 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 5 C 0.05 0.44 5.68 37.16 0.21 0.66 16 6 O -0.38 -3.43 9.29 -35.23 -0.33 -3.75 16 7 C 0.09 0.68 6.22 37.16 0.23 0.91 16 8 C -0.15 -1.09 6.05 -90.62 -0.55 -1.64 16 9 C -0.18 -1.11 10.18 -26.69 -0.27 -1.38 16 10 C -0.18 -1.03 10.25 -26.69 -0.27 -1.30 16 11 N -0.73 -9.11 5.00 -54.88 -0.27 -9.38 16 12 C 0.60 9.83 6.38 -12.52 -0.08 9.75 16 13 O -0.55 -9.93 11.97 5.27 0.06 -9.87 16 14 C -0.33 -6.11 6.13 -105.06 -0.64 -6.75 16 15 C 0.06 1.03 11.50 -16.98 -0.20 0.83 16 16 N -0.30 -6.49 12.50 30.86 0.39 -6.11 16 17 N -0.31 -7.20 3.56 -57.78 -0.21 -7.40 16 18 C 0.25 6.31 5.78 -5.20 -0.03 6.28 16 19 C -0.54 -14.61 9.39 -34.44 -0.32 -14.93 16 20 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 23 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.16 3.38 7.01 -81.60 -0.57 2.80 16 28 C -0.10 -1.76 9.34 36.01 0.34 -1.42 16 29 H 0.06 0.77 7.84 -51.93 -0.41 0.37 16 30 H 0.06 0.96 5.64 -51.93 -0.29 0.66 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 38 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.40 4.53 7.34 -40.82 -0.30 4.23 16 44 H 0.17 2.31 7.50 -52.49 -0.39 1.91 16 45 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 46 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.10 1.70 6.50 -51.93 -0.34 1.37 16 50 H 0.08 1.55 7.70 -51.93 -0.40 1.15 16 LS Contribution 409.39 15.07 6.17 6.17 Total: -1.00 -30.32 409.39 -9.08 -39.40 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.34 Total: 5.09 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.26 Total: -6.06 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.64 Total: -46.86 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.26 Total: -13.63 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.32 -9.08 -39.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892690844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.772 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds