Wall clock time and date at job start Tue Mar 31 2020 18:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47208 * 2 1 4 4 H 1.08998 * 109.47139 * 54.99762 * 3 2 1 5 5 C 1.52997 * 109.46818 * 175.00081 * 3 2 1 6 6 O 1.42894 * 109.47384 * 55.00056 * 5 3 2 7 7 C 1.42901 * 114.00331 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.47499 * 179.97438 * 7 6 5 9 9 C 1.53000 * 117.49988 * 243.75170 * 8 7 6 10 10 C 1.53000 * 117.49879 * 175.08892 * 8 7 6 11 11 N 1.46500 * 109.46780 * 295.00076 * 3 2 1 12 12 C 1.34770 * 120.00063 * 85.00103 * 11 3 2 13 13 O 1.21603 * 120.00516 * 359.97438 * 12 11 3 14 14 C 1.47431 * 119.99929 * 179.97438 * 12 11 3 15 15 C 1.41293 * 126.41437 * 0.04241 * 14 12 11 16 16 N 1.30448 * 108.02361 * 179.70632 * 15 14 12 17 17 N 1.39944 * 108.89724 * 0.40720 * 16 15 14 18 18 C 1.46491 * 125.75406 * 179.85047 * 17 16 15 19 19 C 1.50702 * 109.46957 * 269.68786 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48501 * 109.47188 * 90.00793 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00372 * 23 21 19 26 26 H 1.48498 * 109.47634 * 330.00608 * 23 21 19 27 27 C 1.34263 * 108.48668 * 359.58371 * 17 16 15 28 28 C 1.50701 * 126.28871 * 180.26134 * 27 17 16 29 29 H 1.09000 * 109.46893 * 300.00307 * 1 2 3 30 30 H 1.09002 * 109.47013 * 59.99999 * 1 2 3 31 31 H 1.08994 * 109.47119 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46893 * 239.99693 * 2 1 3 33 33 H 1.09002 * 109.47013 * 120.00001 * 2 1 3 34 34 H 1.09005 * 109.46614 * 175.00008 * 5 3 2 35 35 H 1.08999 * 109.47083 * 294.99558 * 5 3 2 36 36 H 1.09002 * 109.47302 * 300.00221 * 7 6 5 37 37 H 1.09004 * 109.46994 * 59.99940 * 7 6 5 38 38 H 1.09001 * 115.54768 * 29.42155 * 8 7 6 39 39 H 1.08997 * 117.50020 * 359.97438 * 9 8 7 40 40 H 1.08993 * 117.49985 * 145.02346 * 9 8 7 41 41 H 1.08999 * 117.49818 * 214.98568 * 10 8 7 42 42 H 1.09006 * 117.49608 * 0.02562 * 10 8 7 43 43 H 0.97010 * 119.99367 * 264.99976 * 11 3 2 44 44 H 1.07998 * 125.98947 * 359.93069 * 15 14 12 45 45 H 1.09004 * 109.47166 * 149.69052 * 18 17 16 46 46 H 1.08994 * 109.47507 * 29.68759 * 18 17 16 47 47 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.46762 * 89.99560 * 28 27 17 49 49 H 1.08991 * 109.47344 * 210.00318 * 28 27 17 50 50 H 1.08999 * 109.47223 * 330.00739 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4442 0.1257 6 8 4.1293 0.6403 -0.9121 7 6 5.5566 0.5750 -0.8856 8 6 6.0482 -0.3078 -2.0345 9 6 6.7848 -1.5980 -1.6687 10 6 7.5596 -0.4119 -2.2485 11 7 1.6525 2.0974 -1.2518 12 6 0.4352 2.6643 -1.3670 13 8 -0.3416 2.6319 -0.4320 14 6 0.0454 3.3239 -2.6266 15 6 0.8356 3.4398 -3.7921 16 7 0.1396 4.0819 -4.6893 17 7 -1.1072 4.4110 -4.1457 18 6 -2.1764 5.1379 -4.8345 19 6 -2.0164 6.6164 -4.5909 20 1 -1.1997 6.9785 -3.9841 21 6 -2.9092 7.5075 -5.1479 22 7 -3.9035 7.0666 -5.8872 23 14 -2.7063 9.3407 -4.8524 24 1 -1.8465 9.9213 -5.9148 25 1 -4.0382 9.9969 -4.8800 26 1 -2.0731 9.5615 -3.5274 27 6 -1.1603 3.9431 -2.8883 28 6 -2.3227 4.0702 -1.9377 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9355 2.4654 0.0366 35 1 3.8499 1.0377 1.0960 36 1 5.9684 1.5782 -0.9959 37 1 5.8833 0.1506 0.0638 38 1 5.4122 -0.3249 -2.9195 39 1 6.9195 -1.8177 -0.6097 40 1 6.6337 -2.4638 -2.3133 41 1 7.9179 -0.4979 -3.2744 42 1 8.2037 0.1482 -1.5706 43 1 2.2721 2.1230 -1.9978 44 1 1.8385 3.0599 -3.9193 45 1 -3.1433 4.8093 -4.4530 46 1 -2.1210 4.9378 -5.9044 47 1 -4.5318 7.6934 -6.2788 48 1 -2.9839 3.2118 -2.0555 49 1 -1.9521 4.1056 -0.9133 50 1 -2.8729 4.9853 -2.1568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892690844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:44 Heat of formation + Delta-G solvation = -21.319844 kcal Electronic energy + Delta-G solvation = -28910.529185 eV Core-core repulsion = 24938.984048 eV Total energy + Delta-G solvation = -3971.545137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.29298 -40.55178 -39.26569 -37.71325 -36.10200 -35.81131 -33.97870 -33.18493 -32.52402 -30.32947 -29.04392 -28.15221 -27.40137 -25.39124 -24.39582 -23.55511 -23.21275 -21.86137 -21.51782 -21.07678 -20.41358 -18.86535 -18.40092 -17.91037 -17.24959 -16.89192 -16.56707 -16.34201 -16.23710 -16.00826 -15.68849 -15.43605 -15.23612 -14.78554 -14.51861 -14.39379 -14.05454 -13.90805 -13.65336 -13.59989 -13.58366 -13.28769 -13.16707 -13.06646 -12.94698 -12.71977 -12.38187 -12.33661 -12.29565 -11.99958 -11.86038 -11.83809 -11.69968 -11.62423 -11.26690 -11.12732 -10.76811 -10.65020 -10.36479 -10.24242 -9.90931 -9.39714 -8.38063 -6.54605 0.73339 1.34707 1.37100 1.39419 1.48817 1.68515 2.31728 2.41280 2.57184 2.65712 2.93818 3.00871 3.72712 3.77590 3.83932 3.95052 4.02971 4.07126 4.17288 4.20552 4.27606 4.35458 4.41137 4.48426 4.52776 4.58375 4.66869 4.67431 4.72449 4.78327 4.79589 4.81718 4.84525 4.92548 5.05629 5.06284 5.09928 5.14829 5.18927 5.27480 5.29904 5.36219 5.48793 5.57079 5.66586 5.74378 5.74759 6.07216 6.30036 6.54843 6.72366 6.87986 7.16442 7.47332 8.69778 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.002342 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.912995 B =11953.447021 C =12936.345951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.151 3.849 4 H 0.092 0.908 5 C 0.060 3.940 6 O -0.394 6.394 7 C 0.093 3.907 8 C -0.166 4.166 9 C -0.179 4.179 10 C -0.169 4.169 11 N -0.709 5.709 12 C 0.606 3.394 13 O -0.571 6.571 14 C -0.329 4.329 15 C 0.077 3.923 16 N -0.338 5.338 17 N -0.339 5.339 18 C 0.268 3.732 19 C -0.555 4.555 20 H 0.051 0.949 21 C 0.023 3.977 22 N -0.917 5.917 23 Si 0.972 3.028 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.269 1.269 27 C 0.144 3.856 28 C -0.088 4.088 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.409 0.591 44 H 0.220 0.780 45 H 0.049 0.951 46 H 0.030 0.970 47 H 0.274 0.726 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.891 -15.521 13.235 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C 0.047 3.953 4 H 0.110 0.890 5 C -0.017 4.017 6 O -0.314 6.314 7 C 0.017 3.983 8 C -0.185 4.185 9 C -0.216 4.216 10 C -0.206 4.206 11 N -0.361 5.361 12 C 0.395 3.605 13 O -0.452 6.452 14 C -0.345 4.345 15 C -0.110 4.110 16 N -0.158 5.158 17 N -0.116 5.116 18 C 0.149 3.851 19 C -0.593 4.593 20 H 0.070 0.930 21 C -0.179 4.179 22 N -0.554 5.554 23 Si 0.796 3.204 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.194 1.194 27 C 0.008 3.992 28 C -0.146 4.146 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.245 0.755 44 H 0.237 0.763 45 H 0.067 0.933 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.119 0.881 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.966 -15.048 12.351 27.179 hybrid contribution 0.072 0.810 0.099 0.820 sum 19.038 -14.237 12.450 26.836 Atomic orbital electron populations 1.21756 0.96480 1.00200 1.01484 1.21780 0.95160 0.95774 1.03077 1.21161 0.93103 0.93798 0.87230 0.88976 1.22797 0.91407 0.95491 0.91997 1.87873 1.20502 1.70771 1.52255 1.22072 0.80438 0.98745 0.97068 1.22153 0.95405 1.00385 1.00533 1.23149 1.03883 0.92299 1.02281 1.23064 0.92621 1.01895 1.03045 1.45612 1.15774 1.57391 1.17334 1.17004 0.81685 0.76597 0.85195 1.90683 1.52281 1.61455 1.40815 1.20039 0.96711 1.19193 0.98514 1.24432 1.00478 0.96231 0.89836 1.77082 0.92798 1.21096 1.24801 1.49096 1.12625 1.40070 1.09850 1.19344 0.82410 0.90737 0.92605 1.21391 1.13261 0.91015 1.33626 0.93036 1.25752 0.94084 1.04204 0.93837 1.70001 1.15390 1.37209 1.32847 0.85336 0.78056 0.78205 0.78811 1.19795 1.19572 1.19395 1.21975 0.97695 0.92858 0.86633 1.20564 0.93417 1.02925 0.97679 0.93308 0.94692 0.93147 0.91546 0.89749 0.91829 0.89778 0.92287 0.92137 0.87979 0.88043 0.88605 0.88070 0.87738 0.75480 0.76348 0.93269 0.95180 0.91655 0.89287 0.88051 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.51 71.98 0.61 -2.83 16 2 C -0.12 -2.28 5.33 30.60 0.16 -2.12 16 3 C 0.15 2.87 2.66 44.99 0.12 2.98 16 4 H 0.09 1.94 7.58 -2.39 -0.02 1.92 16 5 C 0.06 0.80 5.68 71.98 0.41 1.21 16 6 O -0.39 -6.03 9.29 -148.98 -1.38 -7.42 16 7 C 0.09 1.10 6.22 71.98 0.45 1.55 16 8 C -0.17 -2.09 6.05 -10.79 -0.07 -2.16 16 9 C -0.18 -1.88 10.18 30.62 0.31 -1.57 16 10 C -0.17 -1.64 10.25 30.62 0.31 -1.33 16 11 N -0.71 -16.40 5.00 -445.81 -2.23 -18.63 16 12 C 0.61 19.06 6.38 86.67 0.55 19.62 16 13 O -0.57 -20.17 11.97 -4.04 -0.05 -20.22 16 14 C -0.33 -11.93 6.13 -20.15 -0.12 -12.06 16 15 C 0.08 2.65 11.50 85.65 0.99 3.64 16 16 N -0.34 -14.91 12.50 -56.27 -0.70 -15.61 16 17 N -0.34 -15.98 3.56 -336.71 -1.20 -17.18 16 18 C 0.27 14.07 5.78 85.64 0.50 14.57 16 19 C -0.55 -30.92 9.39 25.60 0.24 -30.68 16 20 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 21 C 0.02 1.23 5.46 84.66 0.46 1.69 16 22 N -0.92 -51.74 13.29 21.45 0.28 -51.45 16 23 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 27 C 0.14 6.01 7.01 42.14 0.30 6.31 16 28 C -0.09 -3.27 9.34 71.24 0.67 -2.60 16 29 H 0.05 1.26 7.84 -2.39 -0.02 1.24 16 30 H 0.03 1.04 5.64 -2.39 -0.01 1.02 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.36 7.73 -2.39 -0.02 1.34 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.57 7.87 -2.38 -0.02 0.55 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.10 0.90 8.03 -2.39 -0.02 0.88 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.41 8.16 7.34 -92.70 -0.68 7.48 16 44 H 0.22 5.18 7.50 -2.91 -0.02 5.16 16 45 H 0.05 2.59 7.62 -2.38 -0.02 2.57 16 46 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 48 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 49 H 0.10 3.63 6.50 -2.39 -0.02 3.61 16 50 H 0.07 2.68 7.70 -2.39 -0.02 2.67 16 Total: -1.00 -66.65 409.39 2.88 -63.77 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.25 Total: 25.52 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.89 Total: -3.78 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -3.85 Total: -102.88 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -1.43 Total: -27.64 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -66.65 2.88 -63.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892690844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.448 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds