Wall clock time and date at job start Tue Mar 31 2020 18:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47041 * 2 1 4 4 H 1.09002 * 109.47168 * 305.00294 * 3 2 1 5 5 N 1.46497 * 109.47034 * 64.99659 * 3 2 1 6 6 C 1.34773 * 120.00462 * 275.00218 * 5 3 2 7 7 O 1.21598 * 119.99873 * 359.97438 * 6 5 3 8 8 C 1.47428 * 120.00096 * 179.97438 * 6 5 3 9 9 C 1.41287 * 126.41567 * 359.69149 * 8 6 5 10 10 N 1.30447 * 108.02582 * 179.85330 * 9 8 6 11 11 N 1.39939 * 108.89419 * 0.40265 * 10 9 8 12 12 C 1.46502 * 125.75217 * 179.73501 * 11 10 9 13 13 C 1.50700 * 109.47141 * 270.00215 * 12 11 10 14 14 H 1.07998 * 120.00409 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99979 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99948 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99737 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47041 * 90.00386 * 17 15 13 19 19 H 1.48497 * 109.46969 * 209.99619 * 17 15 13 20 20 H 1.48492 * 109.47464 * 330.00298 * 17 15 13 21 21 C 1.34259 * 108.49044 * 359.74133 * 11 10 9 22 22 C 1.50701 * 126.28956 * 179.97438 * 21 11 10 23 23 C 1.52998 * 109.47258 * 184.99900 * 3 2 1 24 24 H 1.08999 * 109.57588 * 299.84678 * 23 3 2 25 25 C 1.53178 * 109.52150 * 179.68451 * 23 3 2 26 26 C 1.53181 * 109.03300 * 183.11518 * 25 23 3 27 27 C 1.53096 * 109.16280 * 56.98248 * 26 25 23 28 28 O 1.42894 * 109.41507 * 302.38730 * 27 26 25 29 29 C 1.42908 * 114.09865 * 61.16179 * 28 27 26 30 30 H 1.09004 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47558 * 299.99755 * 1 2 3 32 32 H 1.09001 * 109.47160 * 60.00312 * 1 2 3 33 33 H 1.08995 * 109.47036 * 240.00215 * 2 1 3 34 34 H 1.09001 * 109.47160 * 119.99688 * 2 1 3 35 35 H 0.97006 * 119.99502 * 95.00262 * 5 3 2 36 36 H 1.08006 * 125.99089 * 359.97438 * 9 8 6 37 37 H 1.08997 * 109.47235 * 30.00513 * 12 11 10 38 38 H 1.09002 * 109.46548 * 150.00504 * 12 11 10 39 39 H 0.97006 * 119.99734 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.46974 * 270.00092 * 22 21 11 41 41 H 1.09003 * 109.46951 * 30.00058 * 22 21 11 42 42 H 1.09000 * 109.46840 * 149.99983 * 22 21 11 43 43 H 1.09000 * 109.54365 * 63.25178 * 25 23 3 44 44 H 1.09003 * 109.54455 * 302.97688 * 25 23 3 45 45 H 1.08998 * 109.52547 * 297.07448 * 26 25 23 46 46 H 1.09004 * 109.52249 * 176.88328 * 26 25 23 47 47 H 1.08997 * 109.47878 * 62.37549 * 27 26 25 48 48 H 1.09005 * 109.47771 * 182.39256 * 27 26 25 49 49 H 1.08996 * 109.48078 * 58.82384 * 29 28 27 50 50 H 1.09004 * 109.48442 * 178.85994 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6523 2.0975 1.2518 6 6 0.4350 2.6643 1.3669 7 8 -0.3414 2.6325 0.4316 8 6 0.0448 3.3229 2.6269 9 6 0.8325 3.4334 3.7945 10 7 0.1406 4.0848 4.6882 11 7 -1.1081 4.4093 4.1462 12 6 -2.1774 5.1362 4.8350 13 6 -3.0714 4.1560 5.5500 14 1 -2.8636 3.0976 5.4971 15 6 -4.1546 4.6106 6.2718 16 7 -4.9344 3.7553 6.8962 17 14 -4.5145 6.4413 6.3629 18 1 -5.4134 6.8253 5.2449 19 1 -5.1733 6.7525 7.6568 20 1 -3.2431 7.2015 6.2592 21 6 -1.1609 3.9421 2.8887 22 6 -2.3231 4.0696 1.9378 23 6 3.5648 1.4444 -0.1257 24 1 4.0013 0.9081 0.7168 25 6 4.0759 2.8883 -0.1337 26 6 5.5940 2.8797 -0.3381 27 6 5.9219 2.1401 -1.6378 28 8 5.3919 0.8145 -1.5766 29 6 3.9711 0.7601 -1.4336 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2719 2.1232 1.9978 36 1 1.8332 3.0480 3.9239 37 1 -1.7411 5.8247 5.5586 38 1 -2.7628 5.6974 4.1066 39 1 -5.6963 4.0751 7.4043 40 1 -2.9843 3.2110 2.0550 41 1 -2.8734 4.9846 2.1573 42 1 -1.9522 4.1055 0.9135 43 1 3.8388 3.3644 0.8177 44 1 3.6017 3.4385 -0.9465 45 1 6.0716 2.3725 0.5002 46 1 5.9590 3.9050 -0.4005 47 1 5.4778 2.6707 -2.4800 48 1 7.0033 2.0938 -1.7668 49 1 3.5014 1.2726 -2.2731 50 1 3.6470 -0.2805 -1.4154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893862424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:32 Heat of formation + Delta-G solvation = -31.249244 kcal Electronic energy + Delta-G solvation = -29684.770333 eV Core-core repulsion = 25712.794625 eV Total energy + Delta-G solvation = -3971.975708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94641 -40.16875 -38.83995 -36.19025 -33.96199 -33.50296 -32.62782 -32.01846 -31.25445 -31.15642 -28.01798 -26.92420 -26.08995 -25.23131 -23.19680 -23.06661 -22.17442 -20.81703 -20.57079 -19.80418 -18.95607 -17.25066 -17.19351 -16.77049 -16.40117 -15.75914 -15.33623 -15.26703 -14.89803 -14.69389 -14.50580 -14.27228 -14.07933 -13.97086 -13.38193 -13.17080 -13.08550 -12.76568 -12.68919 -12.58398 -12.42846 -12.28438 -12.10797 -12.03973 -11.63394 -11.55104 -11.41553 -11.24256 -11.19449 -10.85787 -10.80798 -10.66377 -10.58892 -10.41627 -10.24063 -9.83826 -9.80816 -9.37879 -8.88166 -8.86475 -8.66464 -7.97264 -6.34363 -4.39064 2.12741 2.71938 3.02922 3.10381 3.16745 3.20607 3.44696 3.55815 3.87898 4.14229 4.29565 4.40995 4.52679 4.64562 4.77527 4.90295 4.95642 4.99971 5.04823 5.07216 5.16515 5.20318 5.25647 5.35422 5.41389 5.49086 5.52314 5.54976 5.62747 5.65678 5.73950 5.80945 5.87092 5.89713 6.01516 6.01833 6.04162 6.20041 6.25055 6.42956 6.46691 6.54599 6.58534 6.65897 6.84684 7.00977 7.16912 7.54922 7.74218 8.18452 8.26715 8.60892 8.68876 9.19502 10.77853 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023071 B = 0.002452 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.353765 B =11417.104019 C =11998.298379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.157 3.843 4 H 0.088 0.912 5 N -0.727 5.727 6 C 0.605 3.395 7 O -0.549 6.549 8 C -0.330 4.330 9 C 0.060 3.940 10 N -0.293 5.293 11 N -0.314 5.314 12 C 0.225 3.775 13 C -0.545 4.545 14 H 0.081 0.919 15 C 0.081 3.919 16 N -0.883 5.883 17 Si 0.872 3.128 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.263 1.263 21 C 0.168 3.832 22 C -0.094 4.094 23 C -0.130 4.130 24 H 0.085 0.915 25 C -0.117 4.117 26 C -0.156 4.156 27 C 0.058 3.942 28 O -0.382 6.382 29 C 0.067 3.933 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.176 0.824 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.270 0.730 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.053 0.947 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.500 -2.821 -16.660 25.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.106 0.894 5 N -0.379 5.379 6 C 0.396 3.604 7 O -0.428 6.428 8 C -0.345 4.345 9 C -0.127 4.127 10 N -0.112 5.112 11 N -0.090 5.090 12 C 0.106 3.894 13 C -0.583 4.583 14 H 0.100 0.900 15 C -0.124 4.124 16 N -0.519 5.519 17 Si 0.698 3.302 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.188 1.188 21 C 0.031 3.969 22 C -0.152 4.152 23 C -0.149 4.149 24 H 0.103 0.897 25 C -0.155 4.155 26 C -0.194 4.194 27 C -0.019 4.019 28 O -0.300 6.300 29 C -0.010 4.010 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.193 0.807 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.071 0.929 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.757 -2.448 -15.904 23.964 hybrid contribution -0.141 0.767 0.069 0.783 sum 17.617 -1.682 -15.835 23.747 Atomic orbital electron populations 1.21800 0.94461 1.00455 1.03556 1.22047 0.97569 0.95991 1.01900 1.20862 0.92335 0.93446 0.88172 0.89363 1.45732 1.17007 1.59122 1.16042 1.17193 0.80644 0.76385 0.86187 1.90700 1.51272 1.60374 1.40487 1.19698 0.97563 1.19838 0.97398 1.23731 0.99451 0.98656 0.90896 1.77147 0.92235 1.19679 1.22186 1.48898 1.11797 1.39864 1.08491 1.20145 0.83189 0.92774 0.93289 1.21084 1.10132 0.94878 1.32214 0.90048 1.24793 0.95230 0.98016 0.94331 1.69863 1.16077 1.34454 1.31497 0.86907 0.79408 0.85236 0.78639 1.19500 1.20349 1.18796 1.21470 0.95721 0.92878 0.86801 1.20590 0.93799 1.03204 0.97566 1.22080 0.95249 0.97496 1.00117 0.89694 1.21628 0.94918 0.95824 1.03081 1.22203 0.96887 1.01242 0.99066 1.22598 0.99194 0.83616 0.96445 1.87951 1.21134 1.26974 1.93962 1.22658 0.81301 1.01652 0.95368 0.93881 0.91811 0.92242 0.91416 0.91843 0.76980 0.80709 0.92766 0.93462 0.91965 0.89527 0.91226 0.88620 0.90891 0.91633 0.90980 0.90829 0.93213 0.89017 0.92863 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.51 37.16 0.32 -1.47 16 2 C -0.14 -1.30 5.39 -26.73 -0.14 -1.45 16 3 C 0.16 1.50 1.84 -67.93 -0.12 1.37 16 4 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 5 N -0.73 -8.04 4.39 -54.88 -0.24 -8.28 16 6 C 0.61 9.15 6.38 -12.52 -0.08 9.07 16 7 O -0.55 -9.38 11.97 5.28 0.06 -9.31 16 8 C -0.33 -5.69 6.13 -105.07 -0.64 -6.34 16 9 C 0.06 1.00 11.50 -16.98 -0.20 0.80 16 10 N -0.29 -6.09 12.50 30.86 0.39 -5.70 16 11 N -0.31 -6.83 3.56 -57.77 -0.21 -7.04 16 12 C 0.22 5.20 5.03 -5.19 -0.03 5.17 16 13 C -0.55 -14.86 9.94 -34.44 -0.34 -15.20 16 14 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 15 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 16 N -0.88 -25.76 13.96 55.43 0.77 -24.99 16 17 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 21 C 0.17 3.28 7.01 -81.60 -0.57 2.70 16 22 C -0.09 -1.61 9.57 36.01 0.34 -1.27 16 23 C -0.13 -0.99 2.02 -90.48 -0.18 -1.18 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 C -0.12 -0.88 5.11 -26.55 -0.14 -1.02 16 26 C -0.16 -1.03 6.14 -26.59 -0.16 -1.20 16 27 C 0.06 0.40 6.84 37.21 0.25 0.66 16 28 O -0.38 -3.44 10.77 -35.23 -0.38 -3.82 16 29 C 0.07 0.51 5.71 37.21 0.21 0.72 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.96 5.65 -51.93 -0.29 0.67 16 32 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 33 H 0.07 0.53 6.23 -51.93 -0.32 0.20 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 3.63 7.38 -40.82 -0.30 3.33 16 36 H 0.18 2.07 7.50 -52.48 -0.39 1.67 16 37 H 0.05 1.26 7.20 -51.93 -0.37 0.88 16 38 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.07 1.13 7.05 -51.93 -0.37 0.77 16 42 H 0.10 1.55 6.50 -51.93 -0.34 1.22 16 43 H 0.07 0.57 7.59 -51.93 -0.39 0.18 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.10 0.67 6.46 -51.93 -0.34 0.34 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -31.69 389.17 -8.06 -39.75 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.07 Total: 5.01 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.58 Total: -6.50 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.71 Total: -46.00 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.32 Total: -13.13 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.69 -8.06 -39.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893862424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.503 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds