Wall clock time and date at job start Tue Mar 31 2020 18:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47041 * 2 1 4 4 H 1.09002 * 109.47168 * 305.00294 * 3 2 1 5 5 N 1.46497 * 109.47034 * 64.99659 * 3 2 1 6 6 C 1.34773 * 120.00462 * 275.00218 * 5 3 2 7 7 O 1.21598 * 119.99873 * 359.97438 * 6 5 3 8 8 C 1.47428 * 120.00096 * 179.97438 * 6 5 3 9 9 C 1.41287 * 126.41567 * 359.69149 * 8 6 5 10 10 N 1.30447 * 108.02582 * 179.85330 * 9 8 6 11 11 N 1.39939 * 108.89419 * 0.40265 * 10 9 8 12 12 C 1.46502 * 125.75217 * 179.73501 * 11 10 9 13 13 C 1.50700 * 109.47141 * 270.00215 * 12 11 10 14 14 H 1.07998 * 120.00409 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99979 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99948 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99737 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47041 * 90.00386 * 17 15 13 19 19 H 1.48497 * 109.46969 * 209.99619 * 17 15 13 20 20 H 1.48492 * 109.47464 * 330.00298 * 17 15 13 21 21 C 1.34259 * 108.49044 * 359.74133 * 11 10 9 22 22 C 1.50701 * 126.28956 * 179.97438 * 21 11 10 23 23 C 1.52998 * 109.47258 * 184.99900 * 3 2 1 24 24 H 1.08999 * 109.57588 * 299.84678 * 23 3 2 25 25 C 1.53178 * 109.52150 * 179.68451 * 23 3 2 26 26 C 1.53181 * 109.03300 * 183.11518 * 25 23 3 27 27 C 1.53096 * 109.16280 * 56.98248 * 26 25 23 28 28 O 1.42894 * 109.41507 * 302.38730 * 27 26 25 29 29 C 1.42908 * 114.09865 * 61.16179 * 28 27 26 30 30 H 1.09004 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47558 * 299.99755 * 1 2 3 32 32 H 1.09001 * 109.47160 * 60.00312 * 1 2 3 33 33 H 1.08995 * 109.47036 * 240.00215 * 2 1 3 34 34 H 1.09001 * 109.47160 * 119.99688 * 2 1 3 35 35 H 0.97006 * 119.99502 * 95.00262 * 5 3 2 36 36 H 1.08006 * 125.99089 * 359.97438 * 9 8 6 37 37 H 1.08997 * 109.47235 * 30.00513 * 12 11 10 38 38 H 1.09002 * 109.46548 * 150.00504 * 12 11 10 39 39 H 0.97006 * 119.99734 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.46974 * 270.00092 * 22 21 11 41 41 H 1.09003 * 109.46951 * 30.00058 * 22 21 11 42 42 H 1.09000 * 109.46840 * 149.99983 * 22 21 11 43 43 H 1.09000 * 109.54365 * 63.25178 * 25 23 3 44 44 H 1.09003 * 109.54455 * 302.97688 * 25 23 3 45 45 H 1.08998 * 109.52547 * 297.07448 * 26 25 23 46 46 H 1.09004 * 109.52249 * 176.88328 * 26 25 23 47 47 H 1.08997 * 109.47878 * 62.37549 * 27 26 25 48 48 H 1.09005 * 109.47771 * 182.39256 * 27 26 25 49 49 H 1.08996 * 109.48078 * 58.82384 * 29 28 27 50 50 H 1.09004 * 109.48442 * 178.85994 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6523 2.0975 1.2518 6 6 0.4350 2.6643 1.3669 7 8 -0.3414 2.6325 0.4316 8 6 0.0448 3.3229 2.6269 9 6 0.8325 3.4334 3.7945 10 7 0.1406 4.0848 4.6882 11 7 -1.1081 4.4093 4.1462 12 6 -2.1774 5.1362 4.8350 13 6 -3.0714 4.1560 5.5500 14 1 -2.8636 3.0976 5.4971 15 6 -4.1546 4.6106 6.2718 16 7 -4.9344 3.7553 6.8962 17 14 -4.5145 6.4413 6.3629 18 1 -5.4134 6.8253 5.2449 19 1 -5.1733 6.7525 7.6568 20 1 -3.2431 7.2015 6.2592 21 6 -1.1609 3.9421 2.8887 22 6 -2.3231 4.0696 1.9378 23 6 3.5648 1.4444 -0.1257 24 1 4.0013 0.9081 0.7168 25 6 4.0759 2.8883 -0.1337 26 6 5.5940 2.8797 -0.3381 27 6 5.9219 2.1401 -1.6378 28 8 5.3919 0.8145 -1.5766 29 6 3.9711 0.7601 -1.4336 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2719 2.1232 1.9978 36 1 1.8332 3.0480 3.9239 37 1 -1.7411 5.8247 5.5586 38 1 -2.7628 5.6974 4.1066 39 1 -5.6963 4.0751 7.4043 40 1 -2.9843 3.2110 2.0550 41 1 -2.8734 4.9846 2.1573 42 1 -1.9522 4.1055 0.9135 43 1 3.8388 3.3644 0.8177 44 1 3.6017 3.4385 -0.9465 45 1 6.0716 2.3725 0.5002 46 1 5.9590 3.9050 -0.4005 47 1 5.4778 2.6707 -2.4800 48 1 7.0033 2.0938 -1.7668 49 1 3.5014 1.2726 -2.2731 50 1 3.6470 -0.2805 -1.4154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893862424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:31 Heat of formation + Delta-G solvation = -52.248684 kcal Electronic energy + Delta-G solvation = -29685.680937 eV Core-core repulsion = 25712.794625 eV Total energy + Delta-G solvation = -3972.886312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.35119 -41.01102 -39.79730 -37.11991 -35.78103 -34.22541 -34.07949 -33.33490 -32.72998 -31.88543 -29.69224 -28.33279 -26.97200 -25.92749 -24.91110 -23.81309 -23.44972 -21.78741 -21.33005 -20.95317 -20.36190 -19.29522 -18.45295 -17.56625 -17.12787 -16.74489 -16.57496 -16.46605 -16.22147 -15.71675 -15.57035 -15.44628 -15.17738 -14.93989 -14.68482 -14.41123 -14.14862 -14.08789 -13.90927 -13.74275 -13.70453 -13.42873 -13.26033 -13.12767 -13.00152 -12.76835 -12.57068 -12.37539 -12.15409 -12.03667 -11.87117 -11.86232 -11.74454 -11.66855 -11.35645 -11.17819 -10.92878 -10.71928 -10.36654 -10.26291 -9.91772 -9.41100 -8.44138 -6.56137 0.69009 1.32825 1.33343 1.34809 1.44410 1.63424 2.23577 2.38160 2.60571 2.88251 2.97759 3.61107 3.72113 3.74871 3.80091 3.92147 4.08786 4.12813 4.18276 4.23999 4.26408 4.29324 4.38980 4.40079 4.53324 4.58191 4.60999 4.69180 4.70682 4.73866 4.80885 4.83500 4.93957 5.00804 5.04709 5.10951 5.11444 5.14423 5.14934 5.16934 5.25006 5.29677 5.42338 5.52981 5.61614 5.72061 5.83624 6.20651 6.29022 6.46740 6.68882 6.82462 7.07744 7.45991 8.72350 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023071 B = 0.002452 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.353765 B =11417.104019 C =11998.298379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.074 0.926 5 N -0.709 5.709 6 C 0.607 3.393 7 O -0.571 6.571 8 C -0.328 4.328 9 C 0.078 3.922 10 N -0.335 5.335 11 N -0.339 5.339 12 C 0.234 3.766 13 C -0.553 4.553 14 H 0.025 0.975 15 C 0.023 3.977 16 N -0.935 5.935 17 Si 0.949 3.051 18 H -0.252 1.252 19 H -0.277 1.277 20 H -0.242 1.242 21 C 0.145 3.855 22 C -0.087 4.087 23 C -0.118 4.118 24 H 0.092 0.908 25 C -0.118 4.118 26 C -0.152 4.152 27 C 0.053 3.947 28 O -0.399 6.399 29 C 0.066 3.934 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.408 0.592 36 H 0.224 0.776 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.274 0.726 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.104 0.896 49 H 0.055 0.945 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.715 -1.833 -17.911 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.056 3.944 4 H 0.092 0.908 5 N -0.361 5.361 6 C 0.396 3.604 7 O -0.452 6.452 8 C -0.343 4.343 9 C -0.109 4.109 10 N -0.154 5.154 11 N -0.116 5.116 12 C 0.114 3.886 13 C -0.591 4.591 14 H 0.043 0.957 15 C -0.178 4.178 16 N -0.573 5.573 17 Si 0.770 3.230 18 H -0.176 1.176 19 H -0.202 1.202 20 H -0.166 1.166 21 C 0.010 3.990 22 C -0.145 4.145 23 C -0.137 4.137 24 H 0.110 0.890 25 C -0.156 4.156 26 C -0.189 4.189 27 C -0.024 4.024 28 O -0.317 6.317 29 C -0.011 4.011 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.240 0.760 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.071 0.929 48 H 0.122 0.878 49 H 0.073 0.927 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.027 -1.481 -17.179 26.427 hybrid contribution -0.729 0.282 0.381 0.870 sum 19.298 -1.199 -16.797 25.612 Atomic orbital electron populations 1.21740 0.96608 1.00234 1.01410 1.22041 0.95421 0.96151 1.03452 1.20912 0.93704 0.93069 0.86685 0.90769 1.45584 1.15664 1.57730 1.17100 1.16971 0.81663 0.76626 0.85118 1.90693 1.52274 1.61301 1.40900 1.20046 0.96916 1.18843 0.98519 1.24484 1.00633 0.96284 0.89451 1.77086 0.92559 1.21814 1.23942 1.48751 1.12124 1.41536 1.09230 1.19870 0.83253 0.91824 0.93637 1.21179 1.11478 0.93203 1.33210 0.95656 1.25826 0.94589 1.03944 0.93400 1.70026 1.17037 1.37413 1.32812 0.85702 0.80243 0.77990 0.79075 1.17635 1.20236 1.16574 1.21977 0.97193 0.93292 0.86518 1.20576 0.93216 1.03060 0.97694 1.21968 0.93319 0.97823 1.00615 0.88962 1.21635 0.95695 0.95520 1.02727 1.22168 0.96005 1.01836 0.98907 1.22749 0.99950 0.82945 0.96728 1.87934 1.21630 1.28148 1.94030 1.22714 0.80979 1.02225 0.95198 0.93166 0.94861 0.93402 0.89049 0.91070 0.75550 0.75960 0.92640 0.91249 0.91648 0.90696 0.90368 0.87638 0.91031 0.92341 0.90935 0.89841 0.92860 0.87837 0.92686 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.51 71.98 0.61 -2.80 16 2 C -0.13 -2.24 5.39 30.59 0.16 -2.08 16 3 C 0.16 2.75 1.84 44.99 0.08 2.83 16 4 H 0.07 1.55 7.58 -2.39 -0.02 1.53 16 5 N -0.71 -14.29 4.39 -445.82 -1.96 -16.24 16 6 C 0.61 17.77 6.38 86.66 0.55 18.33 16 7 O -0.57 -19.36 11.97 -4.02 -0.05 -19.41 16 8 C -0.33 -11.11 6.13 -20.15 -0.12 -11.23 16 9 C 0.08 2.49 11.50 85.65 0.99 3.48 16 10 N -0.33 -13.84 12.50 -56.27 -0.70 -14.54 16 11 N -0.34 -14.92 3.56 -336.70 -1.20 -16.12 16 12 C 0.23 10.86 5.03 85.63 0.43 11.29 16 13 C -0.55 -31.25 9.94 25.60 0.25 -31.00 16 14 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 15 C 0.02 1.26 5.47 84.66 0.46 1.72 16 16 N -0.93 -56.48 13.96 21.45 0.30 -56.18 16 17 Si 0.95 40.30 27.47 68.60 1.88 42.19 16 18 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 21 C 0.15 5.71 7.01 42.14 0.30 6.01 16 22 C -0.09 -3.06 9.57 71.24 0.68 -2.38 16 23 C -0.12 -1.50 2.02 -10.70 -0.02 -1.52 16 24 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 25 C -0.12 -1.51 5.11 30.71 0.16 -1.35 16 26 C -0.15 -1.62 6.14 30.69 0.19 -1.43 16 27 C 0.05 0.61 6.84 72.01 0.49 1.10 16 28 O -0.40 -6.24 10.77 -148.98 -1.60 -7.84 16 29 C 0.07 0.84 5.71 72.02 0.41 1.25 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.03 0.99 5.65 -2.39 -0.01 0.98 16 32 H 0.05 1.23 7.84 -2.39 -0.02 1.21 16 33 H 0.09 1.16 6.23 -2.39 -0.01 1.14 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.41 6.29 7.38 -92.70 -0.68 5.60 16 36 H 0.22 4.50 7.50 -2.91 -0.02 4.48 16 37 H 0.06 2.54 7.20 -2.39 -0.02 2.52 16 38 H 0.07 2.88 6.44 -2.39 -0.02 2.87 16 39 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 40 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 41 H 0.08 2.53 7.05 -2.39 -0.02 2.52 16 42 H 0.11 3.43 6.50 -2.39 -0.02 3.42 16 43 H 0.07 0.93 7.59 -2.39 -0.02 0.92 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.11 1.15 6.46 -2.38 -0.02 1.14 16 Total: -1.00 -72.53 389.17 2.51 -70.03 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.21 Total: 25.90 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.63 Total: -7.79 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -3.56 Total: -103.08 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -1.65 Total: -27.25 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.88 Total: 42.19 kcal Total: -72.53 2.51 -70.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893862424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.777 kcal (2) G-P(sol) polarization free energy of solvation -72.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds