Wall clock time and date at job start Tue Mar 31 2020 18:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 6 6 C 1.34777 * 120.00075 * 84.99755 * 5 3 2 7 7 O 1.21609 * 119.99893 * 0.02562 * 6 5 3 8 8 C 1.47427 * 120.00029 * 179.97438 * 6 5 3 9 9 C 1.41282 * 126.41580 * 0.02610 * 8 6 5 10 10 N 1.30451 * 108.02504 * 179.97438 * 9 8 6 11 11 N 1.39941 * 108.89532 * 0.02562 * 10 9 8 12 12 C 1.46500 * 125.75221 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46912 * 89.97530 * 12 11 10 14 14 H 1.07999 * 120.00351 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99584 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99812 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 119.99895 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47291 * 90.00382 * 17 15 13 19 19 H 1.48505 * 109.47001 * 209.99928 * 17 15 13 20 20 H 1.48503 * 109.47400 * 329.99520 * 17 15 13 21 21 C 1.34265 * 108.49044 * 359.74704 * 11 10 9 22 22 C 1.50700 * 126.29129 * 180.24048 * 21 11 10 23 23 C 1.53000 * 109.47060 * 175.00005 * 3 2 1 24 24 H 1.08992 * 109.52809 * 59.99972 * 23 3 2 25 25 C 1.53182 * 109.52241 * 180.12765 * 23 3 2 26 26 C 1.53171 * 109.04088 * 176.88434 * 25 23 3 27 27 C 1.53095 * 109.16139 * 303.02033 * 26 25 23 28 28 O 1.42899 * 109.41676 * 57.60605 * 27 26 25 29 29 C 1.42914 * 114.15585 * 298.87257 * 28 27 26 30 30 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 31 31 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 32 32 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 34 34 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 35 35 H 0.96997 * 120.00274 * 264.99726 * 5 3 2 36 36 H 1.08000 * 125.98980 * 0.02562 * 9 8 6 37 37 H 1.09001 * 109.46883 * 209.97242 * 12 11 10 38 38 H 1.08996 * 109.47167 * 329.97551 * 12 11 10 39 39 H 0.96995 * 120.00117 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46655 * 270.21242 * 22 21 11 41 41 H 1.08999 * 109.46968 * 30.21026 * 22 21 11 42 42 H 1.08995 * 109.46844 * 150.20629 * 22 21 11 43 43 H 1.09007 * 109.53738 * 296.75274 * 25 23 3 44 44 H 1.09004 * 109.54474 * 57.01395 * 25 23 3 45 45 H 1.09001 * 109.52046 * 62.91791 * 26 25 23 46 46 H 1.08992 * 109.52383 * 183.04971 * 26 25 23 47 47 H 1.09001 * 109.48017 * 177.59022 * 27 26 25 48 48 H 1.09003 * 109.47573 * 297.61049 * 27 26 25 49 49 H 1.08994 * 109.42654 * 301.11599 * 29 28 27 50 50 H 1.08996 * 109.53963 * 181.07497 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 0.4352 2.6643 -1.3671 7 8 -0.3413 2.6326 -0.4317 8 6 0.0455 3.3239 -2.6266 9 6 0.8358 3.4402 -3.7920 10 7 0.1420 4.0873 -4.6873 11 7 -1.1068 4.4117 -4.1454 12 6 -2.1756 5.1397 -4.8339 13 6 -3.0693 4.1605 -5.5506 14 1 -2.8617 3.1019 -5.4988 15 6 -4.1521 4.6162 -6.2724 16 7 -4.9323 3.7618 -6.8974 17 14 -4.5108 6.4472 -6.3625 18 1 -3.8021 7.0337 -7.5283 19 1 -5.9728 6.6583 -6.5146 20 1 -4.0428 7.1052 -5.1162 21 6 -1.1620 3.9390 -2.8900 22 6 -2.3268 4.0606 -1.9415 23 6 3.5648 1.4442 0.1257 24 1 4.0004 0.9054 -0.7156 25 6 4.0765 2.8880 0.1290 26 6 5.5945 2.8797 0.3335 27 6 5.9222 2.1442 1.6355 28 8 5.3918 0.8185 1.5787 29 6 3.9709 0.7628 1.4352 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 2.2720 2.1231 -1.9978 36 1 1.8383 3.0593 -3.9195 37 1 -2.7613 5.7001 -4.1052 38 1 -1.7388 5.8290 -5.5564 39 1 -5.6943 4.0822 -7.4049 40 1 -2.2309 4.9802 -1.3644 41 1 -3.2569 4.0833 -2.5094 42 1 -2.3350 3.2061 -1.2650 43 1 3.8395 3.3610 -0.8240 44 1 3.6024 3.4411 0.9399 45 1 6.0719 2.3694 -0.5031 46 1 5.9599 3.9049 0.3913 47 1 7.0036 2.0978 1.7646 48 1 5.4784 2.6778 2.4760 49 1 3.5014 1.2772 2.2735 50 1 3.6467 -0.2777 1.4192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893862425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:34 Heat of formation + Delta-G solvation = -52.536044 kcal Electronic energy + Delta-G solvation = -29688.092713 eV Core-core repulsion = 25715.193940 eV Total energy + Delta-G solvation = -3972.898773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.34607 -41.00863 -39.79352 -37.11755 -35.78228 -34.22027 -34.07779 -33.32993 -32.72715 -31.88721 -29.68958 -28.32749 -26.97265 -25.92601 -24.90171 -23.81392 -23.44649 -21.78876 -21.32783 -20.95392 -20.36471 -19.29153 -18.44578 -17.56583 -17.12823 -16.76605 -16.56122 -16.46077 -16.18244 -15.72194 -15.57184 -15.42686 -15.17866 -14.94501 -14.67418 -14.45588 -14.13446 -14.06957 -13.89803 -13.74748 -13.68253 -13.42545 -13.25451 -13.13982 -12.99465 -12.77365 -12.60018 -12.37225 -12.13711 -12.03713 -11.87196 -11.85855 -11.75197 -11.66434 -11.35642 -11.17676 -10.93566 -10.71060 -10.36533 -10.25407 -9.91779 -9.41160 -8.44260 -6.56372 0.69297 1.32323 1.34241 1.35052 1.43908 1.63513 2.23358 2.38330 2.60756 2.88257 2.97461 3.61049 3.72762 3.75227 3.80135 3.92108 4.08722 4.13056 4.17474 4.23968 4.26364 4.29504 4.40055 4.47884 4.53015 4.58177 4.60995 4.65785 4.71446 4.74390 4.80905 4.83498 4.93856 5.00737 5.06519 5.11061 5.11686 5.14301 5.14987 5.17016 5.24911 5.29576 5.42295 5.52886 5.61986 5.72148 5.83803 6.20813 6.29101 6.46775 6.69033 6.82724 7.07600 7.46157 8.72219 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023060 B = 0.002453 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.938735 B =11413.781735 C =11997.905280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.074 0.926 5 N -0.709 5.709 6 C 0.607 3.393 7 O -0.571 6.571 8 C -0.328 4.328 9 C 0.078 3.922 10 N -0.335 5.335 11 N -0.340 5.340 12 C 0.234 3.766 13 C -0.553 4.553 14 H 0.025 0.975 15 C 0.023 3.977 16 N -0.935 5.935 17 Si 0.950 3.050 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.235 1.235 21 C 0.146 3.854 22 C -0.092 4.092 23 C -0.118 4.118 24 H 0.092 0.908 25 C -0.118 4.118 26 C -0.152 4.152 27 C 0.053 3.947 28 O -0.399 6.399 29 C 0.066 3.934 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.408 0.592 36 H 0.224 0.776 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.274 0.726 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.104 0.896 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.707 -1.857 17.950 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.056 3.944 4 H 0.092 0.908 5 N -0.361 5.361 6 C 0.396 3.604 7 O -0.452 6.452 8 C -0.343 4.343 9 C -0.109 4.109 10 N -0.154 5.154 11 N -0.117 5.117 12 C 0.114 3.886 13 C -0.591 4.591 14 H 0.044 0.956 15 C -0.178 4.178 16 N -0.573 5.573 17 Si 0.771 3.229 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.158 1.158 21 C 0.011 3.989 22 C -0.150 4.150 23 C -0.137 4.137 24 H 0.110 0.890 25 C -0.156 4.156 26 C -0.189 4.189 27 C -0.024 4.024 28 O -0.318 6.318 29 C -0.011 4.011 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.244 0.756 36 H 0.240 0.760 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.122 0.878 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.016 -1.506 17.220 26.447 hybrid contribution -0.705 0.305 -0.401 0.866 sum 19.311 -1.202 16.819 25.637 Atomic orbital electron populations 1.21741 0.96606 1.00251 1.01407 1.22041 0.95433 0.96142 1.03455 1.20913 0.93709 0.93071 0.86682 0.90786 1.45584 1.15642 1.57764 1.17093 1.16976 0.81685 0.76592 0.85143 1.90697 1.52120 1.61589 1.40754 1.20046 0.96786 1.18869 0.98639 1.24479 1.00611 0.96352 0.89420 1.77083 0.92572 1.21910 1.23858 1.48759 1.12142 1.41374 1.09400 1.19878 0.83140 0.91747 0.93810 1.21192 1.11571 0.93241 1.33140 0.95643 1.25828 0.94608 1.03945 0.93371 1.70021 1.17088 1.37444 1.32715 0.85694 0.78442 0.77974 0.80825 1.18787 1.19965 1.15782 1.21977 0.97201 0.93112 0.86596 1.20610 0.92710 1.05085 0.96574 1.21968 0.93323 0.97832 1.00607 0.88966 1.21634 0.95695 0.95517 1.02727 1.22164 0.96001 1.01859 0.98892 1.22748 0.99939 0.82949 0.96714 1.87929 1.21648 1.28160 1.94026 1.22712 0.80974 1.02237 0.95173 0.93397 0.94854 0.93145 0.91068 0.89050 0.75556 0.75982 0.91118 0.92735 0.91641 0.88386 0.91368 0.88479 0.91026 0.92358 0.90937 0.89838 0.87830 0.92867 0.92710 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.51 71.98 0.61 -2.79 16 2 C -0.13 -2.24 5.39 30.59 0.17 -2.08 16 3 C 0.16 2.75 1.84 44.99 0.08 2.83 16 4 H 0.07 1.55 7.58 -2.39 -0.02 1.53 16 5 N -0.71 -14.30 4.39 -445.80 -1.96 -16.25 16 6 C 0.61 17.77 6.38 86.66 0.55 18.33 16 7 O -0.57 -19.37 11.97 -4.06 -0.05 -19.42 16 8 C -0.33 -11.11 6.13 -20.15 -0.12 -11.23 16 9 C 0.08 2.49 11.50 85.65 0.99 3.47 16 10 N -0.33 -13.83 12.50 -56.28 -0.70 -14.53 16 11 N -0.34 -14.92 3.56 -336.70 -1.20 -16.12 16 12 C 0.23 10.85 4.85 85.63 0.42 11.27 16 13 C -0.55 -31.28 9.94 25.60 0.25 -31.02 16 14 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 15 C 0.02 1.26 5.47 84.66 0.46 1.73 16 16 N -0.93 -56.47 13.96 21.45 0.30 -56.17 16 17 Si 0.95 40.35 27.47 68.60 1.88 42.24 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.23 -8.82 6.54 99.48 0.65 -8.17 16 21 C 0.15 5.75 7.01 42.14 0.30 6.05 16 22 C -0.09 -3.21 9.34 71.24 0.67 -2.55 16 23 C -0.12 -1.50 2.02 -10.70 -0.02 -1.52 16 24 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 25 C -0.12 -1.51 5.11 30.71 0.16 -1.35 16 26 C -0.15 -1.62 6.14 30.68 0.19 -1.43 16 27 C 0.05 0.61 6.84 72.01 0.49 1.10 16 28 O -0.40 -6.25 10.76 -148.98 -1.60 -7.85 16 29 C 0.07 0.84 5.72 72.02 0.41 1.25 16 30 H 0.05 1.23 7.84 -2.39 -0.02 1.21 16 31 H 0.03 0.99 5.65 -2.38 -0.01 0.97 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.16 6.24 -2.38 -0.01 1.14 16 35 H 0.41 6.29 7.36 -92.71 -0.68 5.61 16 36 H 0.22 4.49 7.50 -2.91 -0.02 4.47 16 37 H 0.07 2.98 6.69 -2.39 -0.02 2.96 16 38 H 0.05 2.46 7.57 -2.39 -0.02 2.44 16 39 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 40 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.07 2.55 7.71 -2.39 -0.02 2.53 16 42 H 0.10 3.40 6.50 -2.39 -0.02 3.38 16 43 H 0.07 0.94 7.57 -2.38 -0.02 0.92 16 44 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.11 1.16 6.47 -2.39 -0.02 1.14 16 Total: -1.00 -72.49 390.02 2.47 -70.01 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.21 Total: 26.04 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.60 Total: -7.95 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -3.56 Total: -103.07 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.65 Total: -27.27 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.88 Total: 42.24 kcal Total: -72.49 2.47 -70.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893862425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.477 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds