Wall clock time and date at job start Tue Mar 31 2020 18:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47351 * 2 1 4 4 H 1.09001 * 109.47178 * 54.99783 * 3 2 1 5 5 C 1.50697 * 109.47176 * 175.00061 * 3 2 1 6 6 H 1.08000 * 120.00095 * 120.00254 * 5 3 2 7 7 C 1.37874 * 120.00076 * 299.99375 * 5 3 2 8 8 N 1.31512 * 119.99962 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46970 * 60.00577 * 9 7 5 11 11 H 1.48498 * 109.46758 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47032 * 300.00376 * 9 7 5 13 13 N 1.46503 * 109.46853 * 294.99995 * 3 2 1 14 14 C 1.34776 * 119.99831 * 84.99911 * 13 3 2 15 15 O 1.21701 * 119.99965 * 355.57333 * 14 13 3 16 16 C 1.46670 * 120.00047 * 175.57528 * 14 13 3 17 17 C 1.37880 * 126.23317 * 5.18844 * 16 14 13 18 18 C 1.39830 * 107.08476 * 179.97438 * 17 16 14 19 19 C 1.35457 * 107.86751 * 359.97438 * 18 17 16 20 20 N 1.35529 * 108.86940 * 359.77030 * 19 18 17 21 21 C 1.46499 * 125.67898 * 180.26245 * 20 19 18 22 22 C 1.53003 * 109.47260 * 264.80289 * 21 20 19 23 23 N 1.46898 * 109.46968 * 179.97438 * 22 21 20 24 24 C 1.47011 * 111.00488 * 293.63389 * 23 22 21 25 25 C 1.53093 * 109.25859 * 177.60934 * 24 23 22 26 26 O 1.43019 * 109.25926 * 56.84787 * 25 24 23 27 27 C 1.43008 * 113.73692 * 301.32976 * 26 25 24 28 28 C 1.47019 * 110.99593 * 169.99475 * 23 22 21 29 29 H 1.09004 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47259 * 60.00063 * 1 2 3 31 31 H 1.09004 * 109.47009 * 299.99821 * 1 2 3 32 32 H 1.09002 * 109.47484 * 119.99490 * 2 1 3 33 33 H 1.08996 * 109.47452 * 239.99738 * 2 1 3 34 34 H 0.97010 * 119.99873 * 179.97438 * 8 7 5 35 35 H 0.96994 * 119.99959 * 264.99898 * 13 3 2 36 36 H 1.07998 * 126.45424 * 359.92843 * 17 16 14 37 37 H 1.08000 * 126.06811 * 180.02562 * 18 17 16 38 38 H 1.08000 * 125.56025 * 179.97438 * 19 18 17 39 39 H 1.09011 * 109.46978 * 24.79998 * 21 20 19 40 40 H 1.08995 * 109.47195 * 144.79504 * 21 20 19 41 41 H 1.09004 * 109.46496 * 299.99708 * 22 21 20 42 42 H 1.09003 * 109.47071 * 59.99730 * 22 21 20 43 43 H 1.09004 * 109.50366 * 297.54567 * 24 23 22 44 44 H 1.09000 * 109.50373 * 57.66823 * 24 23 22 45 45 H 1.08992 * 109.50581 * 296.91011 * 25 24 23 46 46 H 1.09003 * 109.53923 * 176.80301 * 25 24 23 47 47 H 1.08996 * 109.50888 * 298.73319 * 27 26 25 48 48 H 1.09004 * 109.54011 * 178.63003 * 27 26 25 49 49 H 1.08998 * 109.50990 * 302.33277 * 28 23 22 50 50 H 1.09001 * 109.50101 * 62.41837 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0050 0.8813 1.3817 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2169 2.6503 12 1 6.5975 0.1473 0.2348 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3716 2.5627 -0.4614 16 6 0.0826 3.4038 -2.5836 17 6 0.8526 3.5145 -3.7219 18 6 0.1365 4.3038 -4.6272 19 6 -1.0328 4.6533 -4.0394 20 7 -1.0802 4.1083 -2.7995 21 6 -2.1838 4.2482 -1.8462 22 6 -1.8856 5.4020 -0.8866 23 7 -2.9925 5.5426 0.0689 24 6 -4.2238 5.9710 -0.6105 25 6 -5.3630 6.0470 0.4094 26 8 -4.9910 6.9353 1.4668 27 6 -3.7963 6.5478 2.1506 28 6 -2.6411 6.4768 1.1484 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.8293 -0.0616 2.9496 35 1 2.2719 2.1231 -1.9978 36 1 1.8258 3.0751 -3.8836 37 1 0.4582 4.5842 -5.6193 38 1 -1.8031 5.2636 -4.4873 39 1 -3.1072 4.4551 -2.3873 40 1 -2.2940 3.3236 -1.2798 41 1 -0.9622 5.1950 -0.3455 42 1 -1.7754 6.3266 -1.4532 43 1 -4.0698 6.9529 -1.0581 44 1 -4.4792 5.2517 -1.3887 45 1 -5.5528 5.0544 0.8176 46 1 -6.2644 6.4186 -0.0780 47 1 -3.9405 5.5697 2.6095 48 1 -3.5638 7.2813 2.9226 49 1 -1.7413 6.1267 1.6542 50 1 -2.4611 7.4666 0.7288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907389616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:15 Heat of formation + Delta-G solvation = -25.837467 kcal Electronic energy + Delta-G solvation = -30015.717183 eV Core-core repulsion = 26043.976147 eV Total energy + Delta-G solvation = -3971.741036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21310 -39.72448 -38.46922 -36.38508 -34.99896 -33.19813 -32.26146 -31.42536 -31.05127 -29.14337 -28.89471 -26.78219 -26.19237 -24.29248 -23.29369 -22.64659 -21.93914 -20.63592 -20.42946 -19.48049 -19.03928 -17.83336 -16.80130 -16.40380 -16.17150 -15.49606 -15.38746 -15.27753 -15.21635 -14.99003 -14.65430 -14.31375 -14.30085 -13.75569 -13.68752 -13.31318 -12.95489 -12.65576 -12.58121 -12.32823 -12.19567 -12.17769 -11.84050 -11.65713 -11.57532 -11.46463 -11.23082 -11.04212 -10.98425 -10.81166 -10.73273 -10.32606 -10.15706 -9.93683 -9.58759 -9.09071 -9.02009 -8.69288 -8.54383 -8.48503 -8.07898 -7.72687 -6.11907 -4.21260 1.84664 2.76556 2.94716 3.26238 3.31489 3.32850 3.56269 3.68532 4.03177 4.19392 4.41272 4.56578 4.59662 4.73075 4.81296 4.90604 5.00689 5.07400 5.09591 5.19503 5.20109 5.30268 5.39321 5.43530 5.50768 5.52251 5.59120 5.62733 5.72102 5.82756 5.87502 6.23887 6.37098 6.43170 6.51402 6.66791 6.70337 6.70698 6.89271 6.93182 7.08951 7.18788 7.23961 7.38629 7.39336 7.46380 7.63950 7.76381 7.91384 8.19009 8.68025 8.77861 9.12831 9.46052 10.93275 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.003214 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.296835 B = 8709.649890 C =10132.193447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.276 3.724 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.694 5.694 14 C 0.568 3.432 15 O -0.549 6.549 16 C -0.030 4.030 17 C -0.153 4.153 18 C -0.206 4.206 19 C -0.003 4.003 20 N -0.410 5.410 21 C 0.106 3.894 22 C 0.051 3.949 23 N -0.528 5.528 24 C 0.012 3.988 25 C 0.064 3.936 26 O -0.388 6.388 27 C 0.064 3.936 28 C 0.020 3.980 29 H 0.019 0.981 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.390 0.610 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.480 11.026 -8.461 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.174 3.826 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.341 5.341 14 C 0.354 3.646 15 O -0.430 6.430 16 C -0.144 4.144 17 C -0.179 4.179 18 C -0.231 4.231 19 C -0.137 4.137 20 N -0.084 5.084 21 C -0.015 4.015 22 C -0.077 4.077 23 N -0.254 5.254 24 C -0.116 4.116 25 C -0.013 4.013 26 O -0.306 6.306 27 C -0.013 4.013 28 C -0.108 4.108 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.223 0.777 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.178 0.822 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.109 0.891 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.110 0.890 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.488 10.572 -7.043 19.268 hybrid contribution 1.700 0.570 -0.906 2.009 sum -12.788 11.142 -7.949 18.732 Atomic orbital electron populations 1.21852 0.98215 0.97808 1.01395 1.21936 0.92734 0.99719 1.02244 1.18790 0.94120 0.89193 0.80483 0.93362 1.21201 0.90690 1.39136 1.06335 0.92083 1.24868 0.98561 0.94773 0.95366 1.69888 1.35193 1.37501 1.09344 0.86523 0.84903 0.78316 0.77453 1.20190 1.21154 1.20132 1.46249 1.13929 1.55347 1.18596 1.17002 0.83380 0.79459 0.84802 1.90780 1.49147 1.61958 1.41108 1.20645 0.89419 1.05833 0.98472 1.21362 1.00185 1.03304 0.93053 1.20742 0.95801 1.05744 1.00786 1.21860 1.01120 1.04503 0.86244 1.43885 1.14431 1.37531 1.12506 1.21945 0.86720 1.02476 0.90392 1.22335 0.95158 0.96375 0.93837 1.62024 1.03414 1.48265 1.11656 1.22894 0.91519 0.99728 0.97471 1.22649 0.96151 0.94676 0.87826 1.87965 1.43163 1.50983 1.48530 1.22686 0.83512 1.01349 0.93747 1.22785 0.99847 0.94551 0.93600 0.96148 0.94049 0.93180 0.88327 0.95047 0.92522 0.77712 0.84009 0.84509 0.82220 0.90078 0.86263 0.89088 0.94735 0.93992 0.89594 0.91990 0.88531 0.91822 0.88299 0.88989 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.46 37.15 0.31 -2.72 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.28 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.38 7.64 -51.93 -0.40 0.98 16 5 C -0.54 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.69 -14.48 5.01 -56.24 -0.28 -14.77 16 14 C 0.57 11.39 6.50 -12.86 -0.08 11.30 16 15 O -0.55 -12.14 11.48 5.19 0.06 -12.08 16 16 C -0.03 -0.50 6.89 -81.98 -0.56 -1.06 16 17 C -0.15 -2.25 10.35 -39.12 -0.41 -2.66 16 18 C -0.21 -2.59 10.81 -39.98 -0.43 -3.03 16 19 C 0.00 -0.04 11.37 -16.91 -0.19 -0.23 16 20 N -0.41 -5.86 2.76 -112.87 -0.31 -6.17 16 21 C 0.11 1.38 5.40 -4.04 -0.02 1.36 16 22 C 0.05 0.66 5.28 -3.82 -0.02 0.64 16 23 N -0.53 -6.33 4.73 -234.31 -1.11 -7.44 16 24 C 0.01 0.12 5.44 -3.72 -0.02 0.10 16 25 C 0.06 0.59 7.01 37.21 0.26 0.85 16 26 O -0.39 -4.35 10.83 -35.23 -0.38 -4.73 16 27 C 0.06 0.65 7.01 37.21 0.26 0.92 16 28 C 0.02 0.23 5.65 -3.71 -0.02 0.21 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.91 5.54 -51.93 -0.29 0.63 16 31 H 0.05 1.19 7.80 -51.93 -0.40 0.78 16 32 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 35 H 0.39 7.28 7.44 -40.82 -0.30 6.97 16 36 H 0.14 1.88 7.45 -52.49 -0.39 1.49 16 37 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.08 0.82 6.50 -51.92 -0.34 0.48 16 40 H 0.12 1.89 6.53 -51.93 -0.34 1.55 16 41 H 0.09 1.46 7.96 -51.93 -0.41 1.05 16 42 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.71 6.38 -51.93 -0.33 0.38 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 50 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -30.21 391.51 -10.26 -40.47 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -8.12 Total: 10.66 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.62 Total: -3.47 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -1.07 Total: -52.19 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.32 Total: -16.81 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.21 -10.26 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.630 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds