Wall clock time and date at job start Tue Mar 31 2020 18:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47351 * 2 1 4 4 H 1.09001 * 109.47178 * 54.99783 * 3 2 1 5 5 C 1.50697 * 109.47176 * 175.00061 * 3 2 1 6 6 H 1.08000 * 120.00095 * 120.00254 * 5 3 2 7 7 C 1.37874 * 120.00076 * 299.99375 * 5 3 2 8 8 N 1.31512 * 119.99962 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46970 * 60.00577 * 9 7 5 11 11 H 1.48498 * 109.46758 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47032 * 300.00376 * 9 7 5 13 13 N 1.46503 * 109.46853 * 294.99995 * 3 2 1 14 14 C 1.34776 * 119.99831 * 84.99911 * 13 3 2 15 15 O 1.21701 * 119.99965 * 355.57333 * 14 13 3 16 16 C 1.46670 * 120.00047 * 175.57528 * 14 13 3 17 17 C 1.37880 * 126.23317 * 5.18844 * 16 14 13 18 18 C 1.39830 * 107.08476 * 179.97438 * 17 16 14 19 19 C 1.35457 * 107.86751 * 359.97438 * 18 17 16 20 20 N 1.35529 * 108.86940 * 359.77030 * 19 18 17 21 21 C 1.46499 * 125.67898 * 180.26245 * 20 19 18 22 22 C 1.53003 * 109.47260 * 264.80289 * 21 20 19 23 23 N 1.46898 * 109.46968 * 179.97438 * 22 21 20 24 24 C 1.47011 * 111.00488 * 293.63389 * 23 22 21 25 25 C 1.53093 * 109.25859 * 177.60934 * 24 23 22 26 26 O 1.43019 * 109.25926 * 56.84787 * 25 24 23 27 27 C 1.43008 * 113.73692 * 301.32976 * 26 25 24 28 28 C 1.47019 * 110.99593 * 169.99475 * 23 22 21 29 29 H 1.09004 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47259 * 60.00063 * 1 2 3 31 31 H 1.09004 * 109.47009 * 299.99821 * 1 2 3 32 32 H 1.09002 * 109.47484 * 119.99490 * 2 1 3 33 33 H 1.08996 * 109.47452 * 239.99738 * 2 1 3 34 34 H 0.97010 * 119.99873 * 179.97438 * 8 7 5 35 35 H 0.96994 * 119.99959 * 264.99898 * 13 3 2 36 36 H 1.07998 * 126.45424 * 359.92843 * 17 16 14 37 37 H 1.08000 * 126.06811 * 180.02562 * 18 17 16 38 38 H 1.08000 * 125.56025 * 179.97438 * 19 18 17 39 39 H 1.09011 * 109.46978 * 24.79998 * 21 20 19 40 40 H 1.08995 * 109.47195 * 144.79504 * 21 20 19 41 41 H 1.09004 * 109.46496 * 299.99708 * 22 21 20 42 42 H 1.09003 * 109.47071 * 59.99730 * 22 21 20 43 43 H 1.09004 * 109.50366 * 297.54567 * 24 23 22 44 44 H 1.09000 * 109.50373 * 57.66823 * 24 23 22 45 45 H 1.08992 * 109.50581 * 296.91011 * 25 24 23 46 46 H 1.09003 * 109.53923 * 176.80301 * 25 24 23 47 47 H 1.08996 * 109.50888 * 298.73319 * 27 26 25 48 48 H 1.09004 * 109.54011 * 178.63003 * 27 26 25 49 49 H 1.08998 * 109.50990 * 302.33277 * 28 23 22 50 50 H 1.09001 * 109.50101 * 62.41837 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0050 0.8813 1.3817 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2169 2.6503 12 1 6.5975 0.1473 0.2348 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3716 2.5627 -0.4614 16 6 0.0826 3.4038 -2.5836 17 6 0.8526 3.5145 -3.7219 18 6 0.1365 4.3038 -4.6272 19 6 -1.0328 4.6533 -4.0394 20 7 -1.0802 4.1083 -2.7995 21 6 -2.1838 4.2482 -1.8462 22 6 -1.8856 5.4020 -0.8866 23 7 -2.9925 5.5426 0.0689 24 6 -4.2238 5.9710 -0.6105 25 6 -5.3630 6.0470 0.4094 26 8 -4.9910 6.9353 1.4668 27 6 -3.7963 6.5478 2.1506 28 6 -2.6411 6.4768 1.1484 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.8293 -0.0616 2.9496 35 1 2.2719 2.1231 -1.9978 36 1 1.8258 3.0751 -3.8836 37 1 0.4582 4.5842 -5.6193 38 1 -1.8031 5.2636 -4.4873 39 1 -3.1072 4.4551 -2.3873 40 1 -2.2940 3.3236 -1.2798 41 1 -0.9622 5.1950 -0.3455 42 1 -1.7754 6.3266 -1.4532 43 1 -4.0698 6.9529 -1.0581 44 1 -4.4792 5.2517 -1.3887 45 1 -5.5528 5.0544 0.8176 46 1 -6.2644 6.4186 -0.0780 47 1 -3.9405 5.5697 2.6095 48 1 -3.5638 7.2813 2.9226 49 1 -1.7413 6.1267 1.6542 50 1 -2.4611 7.4666 0.7288 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907389616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:14 Heat of formation + Delta-G solvation = -45.967562 kcal Electronic energy + Delta-G solvation = -30016.590089 eV Core-core repulsion = 26043.976147 eV Total energy + Delta-G solvation = -3972.613943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.33790 -40.58346 -40.07387 -37.31371 -36.82824 -34.52972 -33.88045 -32.87373 -32.21958 -30.26010 -30.09418 -28.64133 -27.12286 -25.16076 -25.09895 -23.83015 -23.31029 -21.76273 -21.46724 -21.06119 -20.54708 -19.15364 -18.05594 -17.59208 -17.19602 -17.15580 -16.61292 -16.44426 -16.36887 -16.07394 -15.92605 -15.78902 -15.45587 -14.94023 -14.78930 -14.63562 -14.57357 -14.01120 -13.74553 -13.53693 -13.40996 -13.31292 -13.17721 -13.12886 -13.05467 -12.89076 -12.65272 -12.58505 -12.39143 -12.19080 -12.05752 -11.99531 -11.56968 -11.56088 -11.06593 -10.77927 -10.67801 -10.50733 -9.69601 -9.65995 -9.49961 -9.06207 -8.15694 -6.33015 0.61994 1.44917 1.46769 1.54381 1.70301 1.92434 2.37281 2.57884 2.60390 2.84799 2.95172 3.13826 3.59034 3.73432 3.86766 3.93575 4.03369 4.10781 4.16854 4.20278 4.22329 4.28873 4.44276 4.49790 4.51422 4.54945 4.58621 4.65128 4.72853 4.74378 4.76199 4.79310 4.84289 4.94987 5.07490 5.22025 5.27130 5.33418 5.45259 5.56596 5.62800 5.73653 5.77801 5.84817 5.85875 6.00849 6.07281 6.10346 6.17242 6.40882 6.74084 7.01340 7.33574 7.57351 8.89409 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.003214 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.296835 B = 8709.649890 C =10132.193447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.287 3.713 4 H -0.002 1.002 5 C -0.551 4.551 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.265 1.265 13 N -0.696 5.696 14 C 0.566 3.434 15 O -0.580 6.580 16 C -0.076 4.076 17 C -0.145 4.145 18 C -0.213 4.213 19 C 0.020 3.980 20 N -0.414 5.414 21 C 0.112 3.888 22 C 0.065 3.935 23 N -0.546 5.546 24 C 0.014 3.986 25 C 0.060 3.940 26 O -0.400 6.400 27 C 0.067 3.933 28 C 0.021 3.979 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.401 0.599 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.205 0.795 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.103 0.897 45 H 0.056 0.944 46 H 0.124 0.876 47 H 0.055 0.945 48 H 0.117 0.883 49 H 0.075 0.925 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.089 12.423 -11.377 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.184 3.816 4 H 0.016 0.984 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.345 5.345 14 C 0.354 3.646 15 O -0.462 6.462 16 C -0.189 4.189 17 C -0.172 4.172 18 C -0.237 4.237 19 C -0.114 4.114 20 N -0.088 5.088 21 C -0.010 4.010 22 C -0.064 4.064 23 N -0.272 5.272 24 C -0.114 4.114 25 C -0.016 4.016 26 O -0.319 6.319 27 C -0.010 4.010 28 C -0.107 4.107 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.168 0.832 37 H 0.185 0.815 38 H 0.221 0.779 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.121 0.879 45 H 0.075 0.925 46 H 0.142 0.858 47 H 0.073 0.927 48 H 0.134 0.866 49 H 0.093 0.907 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.098 11.975 -9.989 21.706 hybrid contribution 1.800 0.199 -0.058 1.812 sum -13.298 12.174 -10.047 20.640 Atomic orbital electron populations 1.21660 0.96901 0.98739 1.00295 1.21785 0.93794 0.99181 1.01154 1.18329 0.93521 0.89034 0.80726 0.98399 1.21545 0.91418 1.39141 1.06783 0.91202 1.25740 1.03257 0.94296 0.94952 1.70042 1.37090 1.38191 1.09825 0.85447 0.79161 0.78439 0.77590 1.19706 1.21098 1.18934 1.45974 1.14884 1.55946 1.17651 1.17466 0.82464 0.78908 0.85747 1.90759 1.49887 1.62941 1.42655 1.20186 0.91909 1.08873 0.97950 1.21668 1.00298 1.02604 0.92634 1.21131 0.95635 1.05165 1.01736 1.22653 1.01677 1.02534 0.84574 1.44034 1.13849 1.37410 1.13503 1.21897 0.87863 1.00704 0.90519 1.22092 0.93875 0.96841 0.93575 1.62014 1.04062 1.49114 1.11978 1.22978 0.90171 1.00440 0.97768 1.22841 0.96984 0.94410 0.87413 1.87948 1.43181 1.51636 1.49146 1.22699 0.83019 1.01520 0.93730 1.22763 0.99735 0.94474 0.93768 0.94008 0.93902 0.95464 0.90910 0.94337 0.92578 0.76444 0.83209 0.81491 0.77856 0.86286 0.89708 0.93357 0.93477 0.93332 0.87924 0.92539 0.85841 0.92700 0.86553 0.90680 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.46 71.98 0.61 -4.92 16 2 C -0.12 -6.07 5.45 30.59 0.17 -5.90 16 3 C 0.29 14.99 2.24 44.25 0.10 15.09 16 4 H 0.00 -0.12 7.64 -2.39 -0.02 -0.13 16 5 C -0.55 -29.54 8.73 25.60 0.22 -29.31 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.97 5.29 84.65 0.45 1.41 16 8 N -0.91 -52.46 11.29 21.45 0.24 -52.21 16 9 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 13 N -0.70 -30.24 5.01 -450.06 -2.25 -32.50 16 14 C 0.57 23.71 6.50 86.44 0.56 24.27 16 15 O -0.58 -27.41 11.48 -4.35 -0.05 -27.46 16 16 C -0.08 -2.56 6.89 40.35 0.28 -2.28 16 17 C -0.15 -4.03 10.35 22.57 0.23 -3.80 16 18 C -0.21 -4.56 10.81 22.01 0.24 -4.33 16 19 C 0.02 0.40 11.37 83.48 0.95 1.35 16 20 N -0.41 -11.19 2.76 -511.01 -1.41 -12.61 16 21 C 0.11 2.81 5.40 86.38 0.47 3.27 16 22 C 0.06 1.69 5.28 86.30 0.46 2.14 16 23 N -0.55 -13.09 4.73 -895.21 -4.23 -17.33 16 24 C 0.01 0.24 5.44 86.31 0.47 0.71 16 25 C 0.06 1.00 7.01 72.01 0.50 1.51 16 26 O -0.40 -8.52 10.83 -148.98 -1.61 -10.13 16 27 C 0.07 1.37 7.01 72.01 0.50 1.88 16 28 C 0.02 0.48 5.65 86.31 0.49 0.96 16 29 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.04 1.96 5.54 -2.39 -0.01 1.95 16 31 H 0.03 1.35 7.80 -2.38 -0.02 1.33 16 32 H 0.07 4.08 5.95 -2.39 -0.01 4.06 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 35 H 0.40 15.29 7.44 -92.71 -0.69 14.60 16 36 H 0.15 3.75 7.45 -2.91 -0.02 3.73 16 37 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 38 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.12 2.03 6.50 -2.38 -0.02 2.02 16 40 H 0.08 2.78 6.53 -2.39 -0.02 2.76 16 41 H 0.05 1.66 7.96 -2.38 -0.02 1.64 16 42 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 43 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.10 1.39 6.38 -2.39 -0.02 1.37 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 49 H 0.07 1.93 8.09 -2.39 -0.02 1.92 16 50 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -69.41 391.51 -0.35 -69.76 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.25 Total: 36.05 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 6.69 Total: 2.07 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -7.65 Total: -114.64 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.66 Total: -37.59 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -69.41 -0.35 -69.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.794 kcal (2) G-P(sol) polarization free energy of solvation -69.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds