Wall clock time and date at job start Tue Mar 31 2020 18:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 H 1.08997 * 109.47139 * 305.00003 * 3 2 1 5 5 C 1.50703 * 109.47394 * 184.99899 * 3 2 1 6 6 H 1.07999 * 120.00232 * 240.00172 * 5 3 2 7 7 C 1.37872 * 119.99787 * 59.99902 * 5 3 2 8 8 N 1.31518 * 120.00178 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00152 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47311 * 89.99587 * 9 7 5 11 11 H 1.48500 * 109.47267 * 209.99966 * 9 7 5 12 12 H 1.48507 * 109.46789 * 329.99774 * 9 7 5 13 13 N 1.46500 * 109.47365 * 64.99940 * 3 2 1 14 14 C 1.34778 * 119.99959 * 275.00285 * 13 3 2 15 15 O 1.21695 * 119.99933 * 354.82339 * 14 13 3 16 16 C 1.46676 * 120.00264 * 174.82504 * 14 13 3 17 17 C 1.37869 * 126.23036 * 5.16875 * 16 14 13 18 18 C 1.39841 * 107.08386 * 179.84664 * 17 16 14 19 19 C 1.35452 * 107.86393 * 0.42118 * 18 17 16 20 20 N 1.35532 * 108.87299 * 359.73703 * 19 18 17 21 21 C 1.46499 * 125.67918 * 179.97438 * 20 19 18 22 22 C 1.53008 * 109.46709 * 265.23870 * 21 20 19 23 23 N 1.46898 * 109.46712 * 179.97438 * 22 21 20 24 24 C 1.47019 * 111.00200 * 293.63692 * 23 22 21 25 25 C 1.53096 * 109.25811 * 177.61026 * 24 23 22 26 26 O 1.43015 * 109.26005 * 56.84932 * 25 24 23 27 27 C 1.43022 * 113.73921 * 301.33137 * 26 25 24 28 28 C 1.47020 * 110.99662 * 170.00356 * 23 22 21 29 29 H 1.08999 * 109.46755 * 60.00041 * 1 2 3 30 30 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46906 * 300.00621 * 1 2 3 32 32 H 1.08999 * 109.47343 * 239.99689 * 2 1 3 33 33 H 1.08999 * 109.46755 * 119.99958 * 2 1 3 34 34 H 0.97004 * 120.00182 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00264 * 95.00009 * 13 3 2 36 36 H 1.08001 * 126.45834 * 359.97438 * 17 16 14 37 37 H 1.08001 * 126.07011 * 180.15561 * 18 17 16 38 38 H 1.07998 * 125.56636 * 179.76609 * 19 18 17 39 39 H 1.09000 * 109.47215 * 25.23862 * 21 20 19 40 40 H 1.08999 * 109.47233 * 145.24211 * 21 20 19 41 41 H 1.08993 * 109.47304 * 300.00345 * 22 21 20 42 42 H 1.09007 * 109.46737 * 60.00333 * 22 21 20 43 43 H 1.08997 * 109.50650 * 297.54503 * 24 23 22 44 44 H 1.08997 * 109.50471 * 57.67561 * 24 23 22 45 45 H 1.09001 * 109.50858 * 296.91785 * 25 24 23 46 46 H 1.08994 * 109.54384 * 176.80399 * 25 24 23 47 47 H 1.08998 * 109.50279 * 298.73375 * 27 26 25 48 48 H 1.09000 * 109.54295 * 178.62817 * 27 26 25 49 49 H 1.08991 * 109.50607 * 302.32573 * 28 23 22 50 50 H 1.09000 * 109.50855 * 62.41403 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8798 -1.3811 10 1 6.5539 -0.3521 -0.7597 11 1 6.3836 0.9212 -2.8165 12 1 6.5577 2.0719 -0.6889 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3669 15 8 -0.3058 2.7156 0.4029 16 6 0.0036 3.2198 2.6540 17 6 0.7697 3.3212 3.7958 18 6 -0.0328 3.9100 4.7780 19 6 -1.2511 4.1440 4.2340 20 7 -1.2420 3.7291 2.9438 21 6 -2.3702 3.8088 2.0127 22 6 -3.1318 2.4817 2.0195 23 7 -4.2634 2.5619 1.0863 24 6 -5.2632 3.5337 1.5527 25 6 -6.3930 3.6291 0.5239 26 8 -6.9551 2.3301 0.3189 27 6 -6.0092 1.3587 -0.1362 28 6 -4.8755 1.2403 0.8859 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0614 -2.9498 35 1 2.2720 2.1232 1.9977 36 1 1.7968 3.0072 3.9095 37 1 0.2644 4.1341 5.7918 38 1 -2.0922 4.5890 4.7448 39 1 -3.0388 4.6130 2.3199 40 1 -1.9986 4.0093 1.0078 41 1 -2.4632 1.6776 1.7123 42 1 -3.5034 2.2813 3.0244 43 1 -5.6693 3.2071 2.5100 44 1 -4.7941 4.5106 1.6698 45 1 -5.9962 4.0068 -0.4184 46 1 -7.1645 4.3056 0.8913 47 1 -5.6014 1.6705 -1.0977 48 1 -6.5026 0.3930 -0.2461 49 1 -4.1236 0.5432 0.5162 50 1 -5.2748 0.8767 1.8327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907389617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:18 Heat of formation + Delta-G solvation = -27.406903 kcal Electronic energy + Delta-G solvation = -30155.109581 eV Core-core repulsion = 26183.300489 eV Total energy + Delta-G solvation = -3971.809092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21679 -39.73013 -38.44972 -36.39136 -35.03226 -33.20219 -32.26311 -31.43490 -31.04036 -29.15631 -28.94555 -26.79648 -26.19776 -24.30013 -23.34096 -22.61795 -21.94297 -20.64238 -20.45636 -19.49220 -19.04912 -17.83490 -16.81551 -16.40986 -16.18281 -15.49496 -15.38352 -15.27606 -15.22618 -15.00143 -14.68085 -14.31181 -14.22926 -13.80767 -13.71976 -13.23743 -12.95500 -12.68518 -12.60374 -12.33746 -12.24068 -12.14779 -11.99190 -11.65389 -11.55424 -11.49273 -11.26384 -11.06160 -10.98218 -10.82133 -10.73825 -10.30408 -10.19362 -9.94315 -9.66568 -9.12415 -9.01495 -8.69882 -8.54704 -8.50378 -8.09234 -7.73597 -6.11972 -4.20940 1.84417 2.76261 2.94385 3.25175 3.32271 3.34645 3.55636 3.67859 4.03468 4.18885 4.41510 4.55996 4.59157 4.72184 4.80631 4.89994 5.00070 5.07082 5.08853 5.19166 5.19800 5.29567 5.38756 5.43158 5.50228 5.51679 5.58794 5.61754 5.71367 5.80862 5.87400 6.23663 6.34970 6.36881 6.41608 6.61755 6.66220 6.69457 6.88564 6.92889 7.01385 7.17399 7.20130 7.34380 7.38361 7.44574 7.63071 7.74605 7.90817 8.17471 8.67855 8.78591 9.12811 9.46337 10.93394 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.003178 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.033392 B = 8809.592120 C =10505.913277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.695 5.695 14 C 0.571 3.429 15 O -0.552 6.552 16 C -0.030 4.030 17 C -0.153 4.153 18 C -0.206 4.206 19 C -0.003 4.003 20 N -0.410 5.410 21 C 0.105 3.895 22 C 0.051 3.949 23 N -0.528 5.528 24 C 0.012 3.988 25 C 0.064 3.936 26 O -0.388 6.388 27 C 0.064 3.936 28 C 0.021 3.979 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.034 0.966 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.390 0.610 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.034 0.966 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.064 0.936 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.901 5.267 10.662 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.342 5.342 14 C 0.356 3.644 15 O -0.433 6.433 16 C -0.144 4.144 17 C -0.179 4.179 18 C -0.231 4.231 19 C -0.137 4.137 20 N -0.083 5.083 21 C -0.016 4.016 22 C -0.077 4.077 23 N -0.253 5.253 24 C -0.116 4.116 25 C -0.013 4.013 26 O -0.306 6.306 27 C -0.013 4.013 28 C -0.108 4.108 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.223 0.777 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.178 0.822 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.110 0.890 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.701 5.300 9.060 19.726 hybrid contribution 1.345 -0.239 1.224 1.834 sum -15.357 5.060 10.284 19.162 Atomic orbital electron populations 1.21802 0.98565 0.98020 1.00895 1.21940 0.92470 0.99847 1.02376 1.18801 0.94266 0.88984 0.80788 0.93044 1.21232 0.90679 1.38964 1.06312 0.92029 1.24872 0.98587 0.94813 0.95353 1.69891 1.35101 1.37641 1.09355 0.86460 0.84909 0.78462 0.77358 1.20558 1.21101 1.19830 1.46237 1.13876 1.55291 1.18780 1.16995 0.83142 0.78653 0.85590 1.90769 1.54083 1.59342 1.39090 1.20651 0.86555 1.10098 0.97121 1.21366 0.99747 1.04658 0.92120 1.20744 0.93857 1.08418 1.00053 1.21862 1.00310 1.06989 0.84549 1.43883 1.09668 1.44896 1.09899 1.21958 0.86405 0.97497 0.95774 1.22337 0.92722 0.98781 0.93849 1.62027 1.08170 1.08096 1.47031 1.22896 0.93655 0.97567 0.97499 1.22650 0.95140 0.85129 0.98383 1.87967 1.35522 1.19648 1.87510 1.22687 0.89335 0.92734 0.96540 1.22780 0.97768 0.90938 0.99266 0.93068 0.95833 0.94707 0.88160 0.94981 0.92585 0.77706 0.83996 0.84498 0.82215 0.90061 0.86189 0.89128 0.94758 0.93988 0.89576 0.91977 0.88523 0.91816 0.88313 0.89024 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.58 37.16 0.32 -2.62 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.78 2.25 -69.08 -0.16 6.62 16 4 H 0.05 1.48 7.51 -51.93 -0.39 1.09 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.45 11.29 55.43 0.63 -23.82 16 9 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.69 -14.54 5.01 -56.25 -0.28 -14.82 16 14 C 0.57 11.50 6.15 -12.85 -0.08 11.42 16 15 O -0.55 -12.36 12.31 5.19 0.06 -12.30 16 16 C -0.03 -0.51 6.88 -81.98 -0.56 -1.07 16 17 C -0.15 -2.25 10.36 -39.12 -0.41 -2.66 16 18 C -0.21 -2.60 10.81 -39.98 -0.43 -3.03 16 19 C 0.00 -0.04 11.37 -16.91 -0.19 -0.23 16 20 N -0.41 -5.87 2.76 -112.87 -0.31 -6.19 16 21 C 0.11 1.37 5.42 -4.04 -0.02 1.35 16 22 C 0.05 0.66 5.28 -3.82 -0.02 0.64 16 23 N -0.53 -6.27 4.73 -234.30 -1.11 -7.37 16 24 C 0.01 0.11 5.44 -3.71 -0.02 0.09 16 25 C 0.06 0.58 7.01 37.21 0.26 0.85 16 26 O -0.39 -4.31 10.83 -35.23 -0.38 -4.69 16 27 C 0.06 0.65 7.01 37.21 0.26 0.91 16 28 C 0.02 0.23 5.65 -3.71 -0.02 0.21 16 29 H 0.05 1.18 7.92 -51.93 -0.41 0.77 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.03 0.73 5.75 -51.93 -0.30 0.43 16 32 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.39 7.29 7.44 -40.82 -0.30 6.99 16 36 H 0.14 1.88 7.45 -52.49 -0.39 1.49 16 37 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 39 H 0.08 0.82 6.50 -51.93 -0.34 0.49 16 40 H 0.12 1.92 6.49 -51.93 -0.34 1.59 16 41 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 42 H 0.03 0.41 8.12 -51.92 -0.42 -0.01 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.71 6.38 -51.93 -0.33 0.38 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 50 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 392.38 15.07 5.91 5.91 Total: -1.00 -30.33 392.38 -10.25 -40.58 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.14 Total: 10.51 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -1.61 Total: -3.30 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -1.07 Total: -52.20 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.32 Total: -16.99 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.33 -10.25 -40.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.170 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds