Wall clock time and date at job start Tue Mar 31 2020 18:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 H 1.08997 * 109.47139 * 305.00003 * 3 2 1 5 5 C 1.50703 * 109.47394 * 184.99899 * 3 2 1 6 6 H 1.07999 * 120.00232 * 240.00172 * 5 3 2 7 7 C 1.37872 * 119.99787 * 59.99902 * 5 3 2 8 8 N 1.31518 * 120.00178 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00152 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47311 * 89.99587 * 9 7 5 11 11 H 1.48500 * 109.47267 * 209.99966 * 9 7 5 12 12 H 1.48507 * 109.46789 * 329.99774 * 9 7 5 13 13 N 1.46500 * 109.47365 * 64.99940 * 3 2 1 14 14 C 1.34778 * 119.99959 * 275.00285 * 13 3 2 15 15 O 1.21695 * 119.99933 * 354.82339 * 14 13 3 16 16 C 1.46676 * 120.00264 * 174.82504 * 14 13 3 17 17 C 1.37869 * 126.23036 * 5.16875 * 16 14 13 18 18 C 1.39841 * 107.08386 * 179.84664 * 17 16 14 19 19 C 1.35452 * 107.86393 * 0.42118 * 18 17 16 20 20 N 1.35532 * 108.87299 * 359.73703 * 19 18 17 21 21 C 1.46499 * 125.67918 * 179.97438 * 20 19 18 22 22 C 1.53008 * 109.46709 * 265.23870 * 21 20 19 23 23 N 1.46898 * 109.46712 * 179.97438 * 22 21 20 24 24 C 1.47019 * 111.00200 * 293.63692 * 23 22 21 25 25 C 1.53096 * 109.25811 * 177.61026 * 24 23 22 26 26 O 1.43015 * 109.26005 * 56.84932 * 25 24 23 27 27 C 1.43022 * 113.73921 * 301.33137 * 26 25 24 28 28 C 1.47020 * 110.99662 * 170.00356 * 23 22 21 29 29 H 1.08999 * 109.46755 * 60.00041 * 1 2 3 30 30 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46906 * 300.00621 * 1 2 3 32 32 H 1.08999 * 109.47343 * 239.99689 * 2 1 3 33 33 H 1.08999 * 109.46755 * 119.99958 * 2 1 3 34 34 H 0.97004 * 120.00182 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00264 * 95.00009 * 13 3 2 36 36 H 1.08001 * 126.45834 * 359.97438 * 17 16 14 37 37 H 1.08001 * 126.07011 * 180.15561 * 18 17 16 38 38 H 1.07998 * 125.56636 * 179.76609 * 19 18 17 39 39 H 1.09000 * 109.47215 * 25.23862 * 21 20 19 40 40 H 1.08999 * 109.47233 * 145.24211 * 21 20 19 41 41 H 1.08993 * 109.47304 * 300.00345 * 22 21 20 42 42 H 1.09007 * 109.46737 * 60.00333 * 22 21 20 43 43 H 1.08997 * 109.50650 * 297.54503 * 24 23 22 44 44 H 1.08997 * 109.50471 * 57.67561 * 24 23 22 45 45 H 1.09001 * 109.50858 * 296.91785 * 25 24 23 46 46 H 1.08994 * 109.54384 * 176.80399 * 25 24 23 47 47 H 1.08998 * 109.50279 * 298.73375 * 27 26 25 48 48 H 1.09000 * 109.54295 * 178.62817 * 27 26 25 49 49 H 1.08991 * 109.50607 * 302.32573 * 28 23 22 50 50 H 1.09000 * 109.50855 * 62.41403 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8798 -1.3811 10 1 6.5539 -0.3521 -0.7597 11 1 6.3836 0.9212 -2.8165 12 1 6.5577 2.0719 -0.6889 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3669 15 8 -0.3058 2.7156 0.4029 16 6 0.0036 3.2198 2.6540 17 6 0.7697 3.3212 3.7958 18 6 -0.0328 3.9100 4.7780 19 6 -1.2511 4.1440 4.2340 20 7 -1.2420 3.7291 2.9438 21 6 -2.3702 3.8088 2.0127 22 6 -3.1318 2.4817 2.0195 23 7 -4.2634 2.5619 1.0863 24 6 -5.2632 3.5337 1.5527 25 6 -6.3930 3.6291 0.5239 26 8 -6.9551 2.3301 0.3189 27 6 -6.0092 1.3587 -0.1362 28 6 -4.8755 1.2403 0.8859 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0614 -2.9498 35 1 2.2720 2.1232 1.9977 36 1 1.7968 3.0072 3.9095 37 1 0.2644 4.1341 5.7918 38 1 -2.0922 4.5890 4.7448 39 1 -3.0388 4.6130 2.3199 40 1 -1.9986 4.0093 1.0078 41 1 -2.4632 1.6776 1.7123 42 1 -3.5034 2.2813 3.0244 43 1 -5.6693 3.2071 2.5100 44 1 -4.7941 4.5106 1.6698 45 1 -5.9962 4.0068 -0.4184 46 1 -7.1645 4.3056 0.8913 47 1 -5.6014 1.6705 -1.0977 48 1 -6.5026 0.3930 -0.2461 49 1 -4.1236 0.5432 0.5162 50 1 -5.2748 0.8767 1.8327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907389617.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:17 Heat of formation + Delta-G solvation = -47.717810 kcal Electronic energy + Delta-G solvation = -30155.990328 eV Core-core repulsion = 26183.300489 eV Total energy + Delta-G solvation = -3972.689839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34232 -40.57316 -40.05895 -37.30569 -36.86206 -34.52894 -33.89164 -32.84777 -32.21024 -30.31772 -30.08997 -28.64027 -27.11929 -25.18951 -25.09802 -23.77612 -23.32599 -21.79161 -21.46428 -21.05999 -20.55002 -19.15095 -18.08189 -17.57931 -17.19301 -17.15516 -16.61168 -16.43615 -16.35407 -16.06645 -15.91078 -15.79874 -15.40402 -15.02066 -14.73160 -14.63919 -14.54492 -14.01892 -13.89497 -13.50625 -13.43733 -13.28334 -13.19396 -13.13722 -13.06813 -12.88625 -12.66484 -12.57310 -12.38561 -12.18483 -12.08199 -11.96408 -11.62475 -11.55747 -11.05672 -10.77670 -10.71977 -10.51659 -9.69379 -9.68169 -9.48854 -9.06797 -8.15821 -6.32804 0.61551 1.44857 1.45455 1.55842 1.70262 1.91998 2.37430 2.58046 2.59751 2.85178 2.95734 3.13774 3.59563 3.73646 3.87745 3.94076 4.02870 4.11909 4.17346 4.20726 4.22436 4.29526 4.44053 4.46620 4.50904 4.53518 4.55277 4.65979 4.70973 4.73894 4.75997 4.78551 4.84705 4.95587 5.05342 5.20270 5.24794 5.33112 5.41546 5.55345 5.63154 5.75067 5.76716 5.84629 5.86060 6.00495 6.07150 6.10928 6.16667 6.40654 6.74495 7.00804 7.33665 7.57061 8.89517 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.003178 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.033392 B = 8809.592120 C =10505.913277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.120 4.120 3 C 0.284 3.716 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.697 5.697 14 C 0.569 3.431 15 O -0.584 6.584 16 C -0.077 4.077 17 C -0.145 4.145 18 C -0.213 4.213 19 C 0.020 3.980 20 N -0.414 5.414 21 C 0.110 3.890 22 C 0.065 3.935 23 N -0.546 5.546 24 C 0.014 3.986 25 C 0.060 3.940 26 O -0.401 6.401 27 C 0.067 3.933 28 C 0.022 3.978 29 H 0.026 0.974 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.401 0.599 36 H 0.150 0.850 37 H 0.168 0.832 38 H 0.205 0.795 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.101 0.899 45 H 0.055 0.945 46 H 0.123 0.877 47 H 0.054 0.946 48 H 0.117 0.883 49 H 0.077 0.923 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.576 6.415 13.658 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.181 3.819 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.345 5.345 14 C 0.357 3.643 15 O -0.468 6.468 16 C -0.190 4.190 17 C -0.172 4.172 18 C -0.236 4.236 19 C -0.114 4.114 20 N -0.088 5.088 21 C -0.011 4.011 22 C -0.063 4.063 23 N -0.272 5.272 24 C -0.114 4.114 25 C -0.016 4.016 26 O -0.319 6.319 27 C -0.010 4.010 28 C -0.107 4.107 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.168 0.832 37 H 0.185 0.815 38 H 0.221 0.779 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.119 0.881 45 H 0.074 0.926 46 H 0.141 0.859 47 H 0.072 0.928 48 H 0.135 0.865 49 H 0.095 0.905 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.375 6.458 12.085 22.128 hybrid contribution 1.471 -0.521 0.345 1.598 sum -15.904 5.936 12.430 21.040 Atomic orbital electron populations 1.21593 0.97023 0.99035 0.99819 1.21778 0.93710 0.99116 1.01275 1.18346 0.93624 0.88972 0.80958 0.98177 1.21569 0.91434 1.38994 1.06740 0.91247 1.25741 1.03259 0.94351 0.94954 1.70043 1.36998 1.38300 1.09840 0.85388 0.79192 0.78858 0.77160 1.19610 1.21191 1.19034 1.45971 1.14865 1.55849 1.17821 1.17458 0.82243 0.77800 0.86769 1.90749 1.54759 1.60510 1.40734 1.20184 0.88767 1.13907 0.96138 1.21671 1.00209 1.03413 0.91879 1.21133 0.93563 1.07984 1.00961 1.22655 1.01427 1.04214 0.83113 1.44031 1.09002 1.44758 1.10984 1.21909 0.86395 0.98674 0.94162 1.22094 0.92422 0.97414 0.94410 1.62014 1.08872 1.08952 1.47348 1.22972 0.93159 0.97481 0.97752 1.22832 0.95843 0.84749 0.98208 1.87949 1.36037 1.20439 1.87511 1.22711 0.89100 0.93558 0.95661 1.22758 0.97614 0.90559 0.99721 0.95441 0.93583 0.94445 0.90770 0.94256 0.92588 0.76431 0.83199 0.81462 0.77853 0.86391 0.89848 0.93018 0.93429 0.93280 0.88055 0.92615 0.85907 0.92754 0.86522 0.90487 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.58 71.98 0.62 -4.71 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.84 2.25 44.24 0.10 14.94 16 4 H 0.00 0.02 7.51 -2.39 -0.02 0.00 16 5 C -0.55 -29.52 8.73 25.60 0.22 -29.29 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -52.44 11.29 21.45 0.24 -52.20 16 9 Si 0.97 42.45 29.54 68.60 2.03 44.47 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 13 N -0.70 -30.34 5.01 -450.08 -2.25 -32.60 16 14 C 0.57 23.95 6.15 86.45 0.53 24.48 16 15 O -0.58 -28.00 12.31 -4.33 -0.05 -28.05 16 16 C -0.08 -2.59 6.88 40.35 0.28 -2.31 16 17 C -0.15 -4.02 10.36 22.57 0.23 -3.79 16 18 C -0.21 -4.55 10.81 22.01 0.24 -4.31 16 19 C 0.02 0.41 11.37 83.48 0.95 1.36 16 20 N -0.41 -11.21 2.76 -511.01 -1.41 -12.62 16 21 C 0.11 2.78 5.42 86.38 0.47 3.25 16 22 C 0.07 1.66 5.28 86.31 0.46 2.11 16 23 N -0.55 -12.83 4.73 -895.20 -4.23 -17.06 16 24 C 0.01 0.24 5.44 86.31 0.47 0.71 16 25 C 0.06 1.00 7.01 72.01 0.50 1.51 16 26 O -0.40 -8.42 10.83 -148.98 -1.61 -10.03 16 27 C 0.07 1.33 7.01 72.02 0.50 1.83 16 28 C 0.02 0.48 5.65 86.31 0.49 0.97 16 29 H 0.03 1.34 7.92 -2.39 -0.02 1.32 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.65 5.75 -2.39 -0.01 1.64 16 32 H 0.07 4.12 5.95 -2.39 -0.01 4.10 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 35 H 0.40 15.32 7.44 -92.71 -0.69 14.63 16 36 H 0.15 3.76 7.45 -2.91 -0.02 3.74 16 37 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.12 2.04 6.50 -2.39 -0.02 2.03 16 40 H 0.08 2.78 6.49 -2.39 -0.02 2.76 16 41 H 0.05 1.71 8.04 -2.39 -0.02 1.69 16 42 H 0.05 1.06 8.12 -2.38 -0.02 1.04 16 43 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 44 H 0.10 1.38 6.38 -2.39 -0.02 1.36 16 45 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.08 1.89 8.09 -2.39 -0.02 1.87 16 50 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -69.72 392.38 -0.37 -70.09 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: 0.24 Total: 35.71 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 6.68 Total: 2.29 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -7.65 Total: -114.47 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -1.67 Total: -38.09 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -69.72 -0.37 -70.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389617.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.377 kcal (2) G-P(sol) polarization free energy of solvation -69.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds