Wall clock time and date at job start Tue Mar 31 2020 18:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47251 * 53.42125 * 3 2 1 5 5 C 1.46849 * 110.99941 * 189.99763 * 4 3 2 6 6 C 1.53040 * 109.52050 * 185.84357 * 5 4 3 7 7 C 1.53119 * 109.27662 * 300.82109 * 6 5 4 8 8 C 1.50704 * 109.51905 * 177.56143 * 7 6 5 9 9 O 1.21282 * 119.99980 * 0.12925 * 8 7 6 10 10 N 1.34782 * 119.99521 * 180.12760 * 8 7 6 11 11 C 1.46503 * 119.99477 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46985 * 179.97438 * 11 10 8 13 13 H 1.09005 * 110.63862 * 51.86171 * 12 11 10 14 14 C 1.54326 * 110.84969 * 288.69400 * 12 11 10 15 15 N 1.47029 * 107.26545 * 219.67235 * 14 12 11 16 16 C 1.36936 * 125.64927 * 178.85396 * 15 14 12 17 17 H 1.08000 * 119.99664 * 347.78467 * 16 15 14 18 18 C 1.38814 * 119.99940 * 167.78993 * 16 15 14 19 19 N 1.31611 * 119.99770 * 325.97326 * 18 16 15 20 20 Si 1.86803 * 119.99856 * 145.97398 * 18 16 15 21 21 H 1.48498 * 109.47176 * 59.99787 * 20 18 16 22 22 H 1.48504 * 109.47098 * 299.99679 * 20 18 16 23 23 H 1.48503 * 109.46709 * 179.97438 * 20 18 16 24 24 C 1.47428 * 108.69950 * 358.58471 * 15 14 12 25 25 C 1.54911 * 104.83117 * 24.35676 * 24 15 14 26 26 H 1.08994 * 111.00096 * 81.06545 * 25 24 15 27 27 O 1.42905 * 111.00117 * 204.91505 * 25 24 15 28 28 C 1.53118 * 109.21426 * 57.62865 * 7 6 5 29 29 C 1.46838 * 111.00230 * 314.21308 * 4 3 2 30 30 H 4.40882 * 5.52106 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.47041 * 293.42563 * 3 2 1 32 32 H 1.08991 * 109.46945 * 173.42720 * 3 2 1 33 33 H 1.08998 * 109.46062 * 65.83121 * 5 4 3 34 34 H 1.09001 * 109.46250 * 305.85753 * 5 4 3 35 35 H 1.08999 * 109.49690 * 180.88487 * 6 5 4 36 36 H 1.08997 * 109.50275 * 60.76464 * 6 5 4 37 37 H 1.09000 * 109.52456 * 297.68791 * 7 6 5 38 38 H 0.96994 * 120.00582 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.47566 * 60.00298 * 11 10 8 40 40 H 1.09000 * 109.47284 * 299.99955 * 11 10 8 41 41 H 1.09001 * 109.99550 * 100.19669 * 14 12 11 42 42 H 1.09001 * 109.78084 * 339.02757 * 14 12 11 43 43 H 0.97001 * 120.00692 * 354.24878 * 19 18 16 44 44 H 1.09001 * 110.36401 * 143.19907 * 24 15 14 45 45 H 1.09004 * 110.36635 * 265.51575 * 24 15 14 46 46 H 0.96705 * 113.99844 * 298.54883 * 27 25 24 47 47 H 1.09001 * 109.50502 * 62.31493 * 28 7 6 48 48 H 1.09000 * 109.50448 * 182.43876 * 28 7 6 49 49 H 1.09004 * 109.46345 * 294.17505 * 29 4 3 50 50 H 1.09007 * 109.46637 * 54.15427 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -0.8244 -1.1122 5 6 4.5845 -1.0424 -1.0073 6 6 5.0824 -1.7787 -2.2532 7 6 4.3529 -3.1196 -2.3732 8 6 4.7953 -3.8227 -3.6306 9 8 5.6153 -3.3045 -4.3587 10 7 4.2797 -5.0274 -3.9459 11 6 4.7102 -5.7112 -5.1680 12 6 3.9787 -7.0496 -5.2881 13 1 2.9024 -6.9097 -5.1871 14 6 4.4981 -8.0556 -4.2393 15 7 4.5729 -9.3696 -4.8946 16 6 5.0089 -10.5290 -4.3107 17 1 5.5171 -10.4959 -3.3583 18 6 4.7978 -11.7466 -4.9429 19 7 3.7080 -11.9378 -5.6556 20 14 6.0605 -13.1138 -4.7821 21 1 6.2188 -13.4755 -3.3506 22 1 7.3637 -12.6501 -5.3226 23 1 5.6025 -14.3028 -5.5449 24 6 4.0945 -9.2336 -6.2825 25 6 4.3182 -7.7418 -6.6346 26 1 5.3546 -7.5584 -6.9177 27 8 3.4249 -7.3197 -7.6670 28 6 2.8436 -2.8687 -2.4313 29 6 2.4109 -2.0994 -1.1810 30 1 -1.0498 0.0000 -0.0003 31 1 3.0095 -0.4077 0.9430 32 1 3.0089 1.0217 -0.1176 33 1 4.7985 -1.6410 -0.1219 34 1 5.0916 -0.0809 -0.9268 35 1 6.1548 -1.9541 -2.1678 36 1 4.8811 -1.1744 -3.1377 37 1 4.5860 -3.7398 -1.5077 38 1 3.6243 -5.4420 -3.3634 39 1 5.7851 -5.8875 -5.1263 40 1 4.4772 -5.0904 -6.0330 41 1 3.8110 -8.1012 -3.3944 42 1 5.4887 -7.7545 -3.8983 43 1 3.0138 -11.2604 -5.6716 44 1 4.6756 -9.8719 -6.9482 45 1 3.0354 -9.4836 -6.3449 46 1 3.5350 -7.7961 -8.5014 47 1 2.6060 -2.2821 -3.3188 48 1 2.3175 -3.8224 -2.4732 49 1 2.6350 -2.6931 -0.2947 50 1 1.3391 -1.9056 -1.2268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958723957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:57 Heat of formation + Delta-G solvation = -8.684534 kcal Electronic energy + Delta-G solvation = -28940.959212 eV Core-core repulsion = 24969.961983 eV Total energy + Delta-G solvation = -3970.997229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.41719 -38.98870 -38.29862 -35.37470 -34.94075 -34.79044 -32.72671 -32.23490 -31.08993 -29.76908 -28.01349 -27.56548 -25.48603 -24.18555 -23.54691 -23.07217 -21.01920 -20.46305 -20.11317 -19.61485 -18.49455 -17.65511 -17.38263 -16.85683 -16.39699 -15.71401 -15.64042 -15.38500 -15.16848 -14.73037 -14.49089 -14.17787 -14.07139 -13.74519 -13.58345 -13.41044 -13.36880 -13.14844 -12.85671 -12.47858 -12.39917 -12.24814 -12.00200 -11.72372 -11.49871 -11.16787 -11.05318 -10.97290 -10.91471 -10.76344 -10.72712 -10.55480 -10.51253 -10.17882 -10.05351 -9.81336 -9.68850 -9.44157 -8.99820 -8.74931 -8.41806 -7.07475 -6.23511 -3.17837 2.29522 2.45564 2.64001 3.16196 3.46204 3.51258 3.61581 3.68754 3.93665 4.32317 4.38765 4.46164 4.56582 4.58584 4.83462 4.85321 4.93559 4.95344 5.02160 5.07227 5.10857 5.18104 5.19535 5.26366 5.32803 5.37165 5.48868 5.52874 5.54170 5.61864 5.70236 5.73291 5.79232 5.87280 5.89304 6.05706 6.08517 6.17405 6.39892 6.48848 6.56583 6.64138 6.64609 6.77852 6.86826 7.21592 7.51087 7.67894 7.93889 8.22983 8.39504 8.90578 9.72496 10.26084 11.10712 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002115 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.970384 B =13237.819380 C =13495.827839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.162 3.838 4 N -0.536 5.536 5 C 0.056 3.944 6 C -0.095 4.095 7 C -0.109 4.109 8 C 0.518 3.482 9 O -0.542 6.542 10 N -0.724 5.724 11 C 0.134 3.866 12 C -0.104 4.104 13 H 0.087 0.913 14 C 0.142 3.858 15 N -0.598 5.598 16 C -0.347 4.347 17 H 0.069 0.931 18 C -0.021 4.021 19 N -0.906 5.906 20 Si 1.057 2.943 21 H -0.292 1.292 22 H -0.293 1.293 23 H -0.285 1.285 24 C 0.118 3.882 25 C 0.091 3.909 26 H 0.066 0.934 27 O -0.566 6.566 28 C -0.107 4.107 29 C 0.055 3.945 30 H 0.218 0.782 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.401 0.599 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.025 0.975 42 H 0.031 0.969 43 H 0.268 0.732 44 H 0.055 0.945 45 H 0.033 0.967 46 H 0.378 0.622 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.037 0.963 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 22.401 8.976 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.036 3.964 4 N -0.261 5.261 5 C -0.072 4.072 6 C -0.133 4.133 7 C -0.131 4.131 8 C 0.304 3.696 9 O -0.419 6.419 10 N -0.376 5.376 11 C 0.010 3.990 12 C -0.123 4.123 13 H 0.105 0.895 14 C 0.016 3.984 15 N -0.327 5.327 16 C -0.474 4.474 17 H 0.087 0.913 18 C -0.223 4.223 19 N -0.545 5.545 20 Si 0.886 3.114 21 H -0.219 1.219 22 H -0.221 1.221 23 H -0.211 1.211 24 C -0.008 4.008 25 C 0.031 3.969 26 H 0.084 0.916 27 O -0.371 6.371 28 C -0.146 4.146 29 C -0.073 4.073 30 H 0.235 0.765 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.235 0.765 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.225 0.775 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.055 0.945 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.187 21.793 8.027 23.327 hybrid contribution -0.652 0.369 1.253 1.460 sum -2.839 22.162 9.280 24.194 Atomic orbital electron populations 1.24956 0.95960 1.00355 0.99956 1.22798 0.94247 1.00738 1.00827 1.19079 0.84814 0.99469 0.93054 1.62059 1.04356 1.16977 1.42675 1.22163 0.86975 1.00563 0.97462 1.21389 0.99547 0.93946 0.98408 1.21415 0.97185 0.97935 0.96560 1.20532 0.81074 0.80930 0.87108 1.90694 1.33330 1.65800 1.52122 1.46057 1.45387 1.19972 1.26146 1.21384 0.99019 0.92036 0.86561 1.22402 1.00832 0.93528 0.95526 0.89473 1.21396 0.97701 0.85777 0.93492 1.44415 1.77107 1.04298 1.06851 1.19681 1.35408 0.84406 1.07889 0.91341 1.25696 0.99873 0.97876 0.98904 1.70802 1.04609 1.34978 1.44135 0.83649 0.75859 0.75982 0.75911 1.21934 1.22065 1.21089 1.22153 0.98305 0.92299 0.88026 1.23029 0.92116 0.95281 0.86485 0.91578 1.86411 1.61677 1.64742 1.24242 1.21595 0.93218 1.00533 0.99210 1.22153 0.99090 0.89063 0.96980 0.76507 0.92402 0.88256 0.94402 0.89971 0.90447 0.90019 0.88736 0.76525 0.91274 0.91138 0.95672 0.95061 0.92085 0.92704 0.94886 0.77474 0.90292 0.90708 0.94480 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 19.02 29.55 0.56 -0.85 16 2 C -0.19 -1.53 11.51 -37.12 -0.43 -1.95 16 3 C 0.16 1.13 5.77 -6.61 -0.04 1.09 16 4 N -0.54 -4.39 4.79 -238.18 -1.14 -5.53 16 5 C 0.06 0.41 5.42 -3.83 -0.02 0.39 16 6 C -0.09 -0.89 4.68 -26.65 -0.12 -1.01 16 7 C -0.11 -1.06 2.59 -91.65 -0.24 -1.29 16 8 C 0.52 6.81 7.16 -10.98 -0.08 6.73 16 9 O -0.54 -9.17 15.98 5.56 0.09 -9.08 16 10 N -0.72 -9.19 5.37 -60.29 -0.32 -9.51 16 11 C 0.13 1.99 5.02 -4.04 -0.02 1.97 16 12 C -0.10 -1.73 2.69 -88.78 -0.24 -1.97 16 13 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 14 C 0.14 2.82 6.76 -3.06 -0.02 2.80 16 15 N -0.60 -14.80 3.33 -170.06 -0.57 -15.37 16 16 C -0.35 -9.64 9.97 -15.06 -0.15 -9.79 16 17 H 0.07 1.90 8.02 -52.49 -0.42 1.48 16 18 C -0.02 -0.59 4.95 -17.43 -0.09 -0.68 16 19 N -0.91 -26.84 12.87 55.49 0.71 -26.13 16 20 Si 1.06 24.91 30.03 -169.99 -5.10 19.81 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.12 2.67 5.07 -2.53 -0.01 2.65 16 25 C 0.09 1.63 3.88 -24.58 -0.10 1.53 16 26 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 27 O -0.57 -9.16 13.47 -35.23 -0.47 -9.63 16 28 C -0.11 -0.93 5.26 -26.64 -0.14 -1.07 16 29 C 0.05 0.45 5.07 -3.83 -0.02 0.43 16 30 H 0.22 0.90 7.80 -54.10 -0.42 0.48 16 31 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.31 7.95 -40.82 -0.32 3.98 16 39 H 0.07 1.11 7.94 -51.93 -0.41 0.70 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.03 0.62 7.69 -51.93 -0.40 0.23 16 43 H 0.27 8.01 6.45 -40.82 -0.26 7.74 16 44 H 0.05 1.34 7.82 -51.93 -0.41 0.93 16 45 H 0.03 0.81 7.03 -51.93 -0.36 0.44 16 46 H 0.38 4.66 9.11 45.56 0.42 5.08 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.57 7.65 -51.93 -0.40 0.18 16 49 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.08 0.72 6.36 -51.93 -0.33 0.38 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -34.28 401.37 -9.51 -43.79 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.60 Total: 6.62 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.15 Total: -1.00 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -1.32 Total: -56.54 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.39 Total: -18.72 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.10 Total: 19.81 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.28 -9.51 -43.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958723957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.103 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds