Wall clock time and date at job start Tue Mar 31 2020 18:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47251 * 53.42125 * 3 2 1 5 5 C 1.46849 * 110.99941 * 189.99763 * 4 3 2 6 6 C 1.53040 * 109.52050 * 185.84357 * 5 4 3 7 7 C 1.53119 * 109.27662 * 300.82109 * 6 5 4 8 8 C 1.50704 * 109.51905 * 177.56143 * 7 6 5 9 9 O 1.21282 * 119.99980 * 0.12925 * 8 7 6 10 10 N 1.34782 * 119.99521 * 180.12760 * 8 7 6 11 11 C 1.46503 * 119.99477 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46985 * 179.97438 * 11 10 8 13 13 H 1.09005 * 110.63862 * 51.86171 * 12 11 10 14 14 C 1.54326 * 110.84969 * 288.69400 * 12 11 10 15 15 N 1.47029 * 107.26545 * 219.67235 * 14 12 11 16 16 C 1.36936 * 125.64927 * 178.85396 * 15 14 12 17 17 H 1.08000 * 119.99664 * 347.78467 * 16 15 14 18 18 C 1.38814 * 119.99940 * 167.78993 * 16 15 14 19 19 N 1.31611 * 119.99770 * 325.97326 * 18 16 15 20 20 Si 1.86803 * 119.99856 * 145.97398 * 18 16 15 21 21 H 1.48498 * 109.47176 * 59.99787 * 20 18 16 22 22 H 1.48504 * 109.47098 * 299.99679 * 20 18 16 23 23 H 1.48503 * 109.46709 * 179.97438 * 20 18 16 24 24 C 1.47428 * 108.69950 * 358.58471 * 15 14 12 25 25 C 1.54911 * 104.83117 * 24.35676 * 24 15 14 26 26 H 1.08994 * 111.00096 * 81.06545 * 25 24 15 27 27 O 1.42905 * 111.00117 * 204.91505 * 25 24 15 28 28 C 1.53118 * 109.21426 * 57.62865 * 7 6 5 29 29 C 1.46838 * 111.00230 * 314.21308 * 4 3 2 30 30 H 4.40882 * 5.52106 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.47041 * 293.42563 * 3 2 1 32 32 H 1.08991 * 109.46945 * 173.42720 * 3 2 1 33 33 H 1.08998 * 109.46062 * 65.83121 * 5 4 3 34 34 H 1.09001 * 109.46250 * 305.85753 * 5 4 3 35 35 H 1.08999 * 109.49690 * 180.88487 * 6 5 4 36 36 H 1.08997 * 109.50275 * 60.76464 * 6 5 4 37 37 H 1.09000 * 109.52456 * 297.68791 * 7 6 5 38 38 H 0.96994 * 120.00582 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.47566 * 60.00298 * 11 10 8 40 40 H 1.09000 * 109.47284 * 299.99955 * 11 10 8 41 41 H 1.09001 * 109.99550 * 100.19669 * 14 12 11 42 42 H 1.09001 * 109.78084 * 339.02757 * 14 12 11 43 43 H 0.97001 * 120.00692 * 354.24878 * 19 18 16 44 44 H 1.09001 * 110.36401 * 143.19907 * 24 15 14 45 45 H 1.09004 * 110.36635 * 265.51575 * 24 15 14 46 46 H 0.96705 * 113.99844 * 298.54883 * 27 25 24 47 47 H 1.09001 * 109.50502 * 62.31493 * 28 7 6 48 48 H 1.09000 * 109.50448 * 182.43876 * 28 7 6 49 49 H 1.09004 * 109.46345 * 294.17505 * 29 4 3 50 50 H 1.09007 * 109.46637 * 54.15427 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -0.8244 -1.1122 5 6 4.5845 -1.0424 -1.0073 6 6 5.0824 -1.7787 -2.2532 7 6 4.3529 -3.1196 -2.3732 8 6 4.7953 -3.8227 -3.6306 9 8 5.6153 -3.3045 -4.3587 10 7 4.2797 -5.0274 -3.9459 11 6 4.7102 -5.7112 -5.1680 12 6 3.9787 -7.0496 -5.2881 13 1 2.9024 -6.9097 -5.1871 14 6 4.4981 -8.0556 -4.2393 15 7 4.5729 -9.3696 -4.8946 16 6 5.0089 -10.5290 -4.3107 17 1 5.5171 -10.4959 -3.3583 18 6 4.7978 -11.7466 -4.9429 19 7 3.7080 -11.9378 -5.6556 20 14 6.0605 -13.1138 -4.7821 21 1 6.2188 -13.4755 -3.3506 22 1 7.3637 -12.6501 -5.3226 23 1 5.6025 -14.3028 -5.5449 24 6 4.0945 -9.2336 -6.2825 25 6 4.3182 -7.7418 -6.6346 26 1 5.3546 -7.5584 -6.9177 27 8 3.4249 -7.3197 -7.6670 28 6 2.8436 -2.8687 -2.4313 29 6 2.4109 -2.0994 -1.1810 30 1 -1.0498 0.0000 -0.0003 31 1 3.0095 -0.4077 0.9430 32 1 3.0089 1.0217 -0.1176 33 1 4.7985 -1.6410 -0.1219 34 1 5.0916 -0.0809 -0.9268 35 1 6.1548 -1.9541 -2.1678 36 1 4.8811 -1.1744 -3.1377 37 1 4.5860 -3.7398 -1.5077 38 1 3.6243 -5.4420 -3.3634 39 1 5.7851 -5.8875 -5.1263 40 1 4.4772 -5.0904 -6.0330 41 1 3.8110 -8.1012 -3.3944 42 1 5.4887 -7.7545 -3.8983 43 1 3.0138 -11.2604 -5.6716 44 1 4.6756 -9.8719 -6.9482 45 1 3.0354 -9.4836 -6.3449 46 1 3.5350 -7.7961 -8.5014 47 1 2.6060 -2.2821 -3.3188 48 1 2.3175 -3.8224 -2.4732 49 1 2.6350 -2.6931 -0.2947 50 1 1.3391 -1.9056 -1.2268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958723957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:56 Heat of formation + Delta-G solvation = -34.887832 kcal Electronic energy + Delta-G solvation = -28942.095473 eV Core-core repulsion = 24969.961983 eV Total energy + Delta-G solvation = -3972.133489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37821 -40.20473 -39.40470 -36.84116 -36.25345 -35.59186 -34.20880 -33.15409 -31.77715 -31.33335 -29.55915 -28.45481 -27.02568 -25.50102 -24.34257 -24.07849 -22.49700 -21.71073 -21.40804 -20.57456 -19.60649 -19.00186 -18.56061 -18.10708 -17.27006 -16.79545 -16.65881 -16.38623 -16.12306 -15.90971 -15.69830 -15.55145 -15.32838 -15.15654 -14.77969 -14.58771 -14.25182 -14.05488 -13.97429 -13.82171 -13.72144 -13.58665 -13.02174 -12.79861 -12.61094 -12.47636 -12.39813 -12.34424 -12.18722 -11.91380 -11.80844 -11.77692 -11.63052 -11.57779 -11.31135 -11.07922 -11.05074 -10.74629 -10.49556 -10.14279 -9.30435 -9.10297 -8.42952 -5.33126 1.57020 1.59788 1.63919 1.74551 1.83682 1.91382 2.10778 2.59011 2.97903 3.05688 3.14819 3.45036 3.46963 3.50266 3.61439 3.73335 3.76183 3.82680 3.94149 4.18651 4.21409 4.25143 4.27950 4.36423 4.40358 4.42230 4.52655 4.57194 4.65052 4.68405 4.74222 4.78406 4.79865 4.88198 4.91790 4.94154 5.07005 5.07374 5.11327 5.15407 5.16237 5.31512 5.40332 5.62419 6.00415 6.07709 6.24165 6.49387 6.68949 6.73206 6.81947 7.19570 7.64603 8.21643 8.90980 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002115 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.970384 B =13237.819380 C =13495.827839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.215 4.215 3 C 0.161 3.839 4 N -0.550 5.550 5 C 0.061 3.939 6 C -0.092 4.092 7 C -0.101 4.101 8 C 0.517 3.483 9 O -0.582 6.582 10 N -0.718 5.718 11 C 0.147 3.853 12 C -0.086 4.086 13 H 0.093 0.907 14 C 0.141 3.859 15 N -0.622 5.622 16 C -0.355 4.355 17 H 0.064 0.936 18 C -0.073 4.073 19 N -0.933 5.933 20 Si 1.109 2.891 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.292 1.292 24 C 0.124 3.876 25 C 0.108 3.892 26 H 0.076 0.924 27 O -0.565 6.565 28 C -0.102 4.102 29 C 0.059 3.941 30 H 0.241 0.759 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.412 0.588 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.254 0.746 44 H 0.028 0.972 45 H 0.010 0.990 46 H 0.396 0.604 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.045 0.955 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 23.482 10.299 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.216 4.216 3 C 0.036 3.964 4 N -0.275 5.275 5 C -0.066 4.066 6 C -0.131 4.131 7 C -0.123 4.123 8 C 0.304 3.696 9 O -0.462 6.462 10 N -0.369 5.369 11 C 0.022 3.978 12 C -0.105 4.105 13 H 0.112 0.888 14 C 0.016 3.984 15 N -0.350 5.350 16 C -0.483 4.483 17 H 0.082 0.918 18 C -0.270 4.270 19 N -0.574 5.574 20 Si 0.933 3.067 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.218 1.218 24 C -0.003 4.003 25 C 0.047 3.953 26 H 0.094 0.906 27 O -0.372 6.372 28 C -0.140 4.140 29 C -0.069 4.069 30 H 0.257 0.743 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.248 0.752 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.028 0.972 46 H 0.246 0.754 47 H 0.081 0.919 48 H 0.105 0.895 49 H 0.063 0.937 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.034 22.900 9.369 24.826 hybrid contribution -0.758 0.084 0.833 1.130 sum -2.792 22.983 10.202 25.301 Atomic orbital electron populations 1.25678 0.96864 0.99558 0.99149 1.23277 0.95101 1.01552 1.01637 1.19155 0.84379 0.99812 0.93101 1.62034 1.04707 1.17093 1.43676 1.22123 0.86658 1.01184 0.96613 1.21343 0.99402 0.93704 0.98614 1.21429 0.97763 0.97914 0.95151 1.21147 0.80159 0.80590 0.87663 1.90678 1.35186 1.66707 1.53641 1.45978 1.45464 1.19890 1.25595 1.21097 0.98145 0.90967 0.87554 1.22224 1.01211 0.93374 0.93679 0.88848 1.21515 0.98088 0.84441 0.94309 1.44672 1.77087 1.05094 1.08149 1.19930 1.34735 0.85753 1.07901 0.91794 1.27039 1.00686 1.00502 0.98764 1.70921 1.05400 1.34911 1.46202 0.82944 0.73783 0.73142 0.76808 1.19923 1.20831 1.21788 1.22068 0.96187 0.95155 0.86860 1.22769 0.92976 0.91928 0.87637 0.90590 1.86386 1.61272 1.64703 1.24869 1.21560 0.92478 1.01029 0.98949 1.22088 0.98841 0.89198 0.96755 0.74266 0.91237 0.87345 0.93149 0.88712 0.90864 0.92200 0.86760 0.75162 0.92166 0.91320 0.95218 0.94692 0.93612 0.95396 0.97204 0.75407 0.91945 0.89483 0.93663 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 19.02 74.32 1.41 -1.11 16 2 C -0.22 -3.23 11.51 31.12 0.36 -2.87 16 3 C 0.16 1.97 5.77 84.50 0.49 2.45 16 4 N -0.55 -8.07 4.79 -907.46 -4.35 -12.42 16 5 C 0.06 0.78 5.42 86.33 0.47 1.25 16 6 C -0.09 -1.63 4.68 30.65 0.14 -1.49 16 7 C -0.10 -1.79 2.59 -11.46 -0.03 -1.82 16 8 C 0.52 12.99 7.16 87.66 0.63 13.62 16 9 O -0.58 -19.47 15.98 -3.04 -0.05 -19.52 16 10 N -0.72 -17.01 5.37 -463.04 -2.49 -19.49 16 11 C 0.15 4.15 5.02 86.38 0.43 4.59 16 12 C -0.09 -2.74 2.69 -9.60 -0.03 -2.76 16 13 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 14 C 0.14 5.48 6.76 86.73 0.59 6.07 16 15 N -0.62 -30.92 3.33 -691.94 -2.30 -33.22 16 16 C -0.36 -19.85 9.97 84.03 0.84 -19.02 16 17 H 0.06 3.55 8.02 -2.91 -0.02 3.53 16 18 C -0.07 -4.13 4.95 84.86 0.42 -3.71 16 19 N -0.93 -56.50 12.87 21.65 0.28 -56.22 16 20 Si 1.11 50.38 30.03 68.60 2.06 52.44 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 C 0.12 5.65 5.07 86.86 0.44 6.09 16 25 C 0.11 3.75 3.88 31.98 0.12 3.87 16 26 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 27 O -0.57 -17.42 13.47 -148.98 -2.01 -19.43 16 28 C -0.10 -1.61 5.26 30.65 0.16 -1.45 16 29 C 0.06 0.86 5.07 86.33 0.44 1.29 16 30 H 0.24 1.51 7.80 -4.43 -0.03 1.48 16 31 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 32 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 0.97 8.12 -2.39 -0.02 0.96 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.32 8.04 -2.39 -0.02 1.30 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.41 7.93 7.95 -92.71 -0.74 7.20 16 39 H 0.06 1.85 7.94 -2.39 -0.02 1.83 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 1.35 7.69 -2.39 -0.02 1.33 16 43 H 0.25 15.68 6.45 -92.71 -0.60 15.09 16 44 H 0.03 1.40 7.82 -2.39 -0.02 1.38 16 45 H 0.01 0.51 7.03 -2.39 -0.02 0.49 16 46 H 0.40 9.18 9.11 -74.05 -0.67 8.51 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 48 H 0.09 1.14 7.65 -2.39 -0.02 1.12 16 49 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 50 H 0.08 1.23 6.36 -2.38 -0.02 1.22 16 Total: -1.00 -74.73 401.37 -2.28 -77.01 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.30 Total: 25.83 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.88 Total: 5.02 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -8.86 Total: -121.35 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -2.06 Total: -38.95 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.06 Total: 52.44 kcal Total: -74.73 -2.28 -77.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958723957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.120 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds