Wall clock time and date at job start Tue Mar 31 2020 18:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46670 * 130.25924 * 3 2 1 5 5 C 1.46842 * 111.00006 * 45.79138 * 4 3 2 6 6 C 1.53041 * 109.52182 * 185.83625 * 5 4 3 7 7 C 1.53117 * 109.27666 * 300.81975 * 6 5 4 8 8 C 1.50707 * 109.52288 * 177.56251 * 7 6 5 9 9 O 1.21280 * 119.99740 * 240.32213 * 8 7 6 10 10 N 1.34769 * 120.00045 * 60.31641 * 8 7 6 11 11 C 1.46506 * 119.99831 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46848 * 179.97438 * 11 10 8 13 13 H 1.08994 * 110.89049 * 302.57100 * 12 11 10 14 14 C 1.54911 * 111.00053 * 66.45306 * 12 11 10 15 15 N 1.47433 * 104.83039 * 155.08344 * 14 12 11 16 16 C 1.36928 * 125.64960 * 155.83417 * 15 14 12 17 17 H 1.08003 * 120.00353 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99859 * 179.97438 * 16 15 14 19 19 N 1.31609 * 120.00219 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99741 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47301 * 90.00319 * 20 18 16 22 22 H 1.48500 * 109.46824 * 210.00387 * 20 18 16 23 23 H 1.48498 * 109.47364 * 329.99760 * 20 18 16 24 24 C 1.47026 * 108.70222 * 335.86657 * 15 14 12 25 25 C 1.54328 * 107.26831 * 1.06451 * 24 15 14 26 26 H 1.08997 * 110.71948 * 140.55427 * 25 24 15 27 27 O 1.42904 * 110.71529 * 263.82383 * 25 24 15 28 28 C 1.53124 * 109.16371 * 57.65667 * 7 6 5 29 29 C 1.46850 * 110.99680 * 170.00100 * 4 3 2 30 30 H 4.40881 * 5.52159 * 180.02562 * 4 1 2 31 31 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 32 32 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 33 33 H 1.08997 * 109.46253 * 305.85236 * 5 4 3 34 34 H 1.09008 * 109.46278 * 65.82293 * 5 4 3 35 35 H 1.09002 * 109.50396 * 180.88537 * 6 5 4 36 36 H 1.08992 * 109.50449 * 60.75971 * 6 5 4 37 37 H 1.09000 * 109.58005 * 297.71499 * 7 6 5 38 38 H 0.96996 * 120.00309 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.46821 * 299.99645 * 11 10 8 40 40 H 1.08994 * 109.47195 * 60.00044 * 11 10 8 41 41 H 1.08999 * 110.36674 * 273.91931 * 14 12 11 42 42 H 1.08998 * 110.36859 * 36.24663 * 14 12 11 43 43 H 0.97004 * 120.00197 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.88266 * 120.47304 * 24 15 14 45 45 H 1.08993 * 109.88347 * 241.49188 * 24 15 14 46 46 H 0.96699 * 114.00535 * 293.52263 * 27 25 24 47 47 H 1.08998 * 109.50391 * 182.40606 * 28 7 6 48 48 H 1.08997 * 109.53049 * 62.30139 * 28 7 6 49 49 H 1.08999 * 109.45996 * 294.17720 * 29 4 3 50 50 H 1.08998 * 109.46346 * 54.14090 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 0.8960 -1.0570 5 6 2.4087 2.1720 -1.0437 6 6 2.8409 3.0191 -2.2428 7 6 4.3498 3.2685 -2.1678 8 6 4.7915 4.0515 -3.3774 9 8 5.6101 3.5810 -4.1386 10 7 4.2767 5.2745 -3.6133 11 6 4.7057 6.0354 -4.7894 12 6 3.9745 7.3790 -4.8221 13 1 2.8944 7.2336 -4.8277 14 6 4.4079 8.2759 -3.6357 15 7 4.1535 9.6545 -4.0923 16 6 3.9341 10.7360 -3.2815 17 1 3.9391 10.6162 -2.2082 18 6 3.7063 11.9866 -3.8393 19 7 3.7017 12.1330 -5.1472 20 14 3.4076 13.4621 -2.7332 21 1 4.7038 14.1141 -2.4168 22 1 2.5229 14.4310 -3.4287 23 1 2.7586 13.0142 -1.4749 24 6 4.1737 9.6756 -5.5622 25 6 4.4283 8.2297 -6.0377 26 1 3.8245 8.0005 -6.9157 27 8 5.8162 8.0238 -6.3091 28 6 5.0806 1.9233 -2.1342 29 6 4.5834 1.1081 -0.9383 30 1 -1.0502 -0.0001 0.0004 31 1 3.0092 0.3479 0.9672 32 1 3.0098 -1.0104 -0.1831 33 1 1.3372 1.9806 -1.1016 34 1 2.6325 2.7077 -0.1210 35 1 2.3132 3.9726 -2.2239 36 1 2.6050 2.4900 -3.1660 37 1 4.5824 3.8321 -1.2643 38 1 3.6217 5.6507 -3.0048 39 1 5.7809 6.2076 -4.7384 40 1 4.4704 5.4721 -5.6923 41 1 3.8094 8.0522 -2.7527 42 1 5.4677 8.1366 -3.4221 43 1 3.5421 13.0068 -5.5369 44 1 3.2138 10.0267 -5.9411 45 1 4.9721 10.3296 -5.9126 46 1 6.1499 8.5331 -7.0603 47 1 6.1528 2.0940 -2.0378 48 1 4.8804 1.3768 -3.0558 49 1 4.7969 1.6487 -0.0163 50 1 5.0914 0.1439 -0.9197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958723958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:00 Heat of formation + Delta-G solvation = -3.654094 kcal Electronic energy + Delta-G solvation = -29043.994914 eV Core-core repulsion = 25073.215821 eV Total energy + Delta-G solvation = -3970.779093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.33433 -38.88548 -38.15377 -34.98008 -34.83145 -34.55848 -32.61022 -32.02221 -31.04402 -29.72136 -28.01615 -27.44850 -25.53806 -24.22375 -23.50302 -23.03233 -20.90124 -20.26435 -19.92375 -19.47260 -18.46596 -17.36169 -17.31458 -16.36806 -16.30210 -15.62309 -15.47888 -15.25388 -14.99869 -14.85529 -14.25382 -14.08581 -13.94821 -13.74103 -13.71019 -13.30772 -13.10546 -12.97515 -12.66108 -12.59071 -12.32627 -11.85581 -11.66811 -11.47037 -11.39913 -11.24198 -11.03073 -10.88232 -10.83251 -10.70858 -10.63876 -10.48187 -10.47363 -10.11591 -10.05630 -9.82699 -9.55438 -9.18734 -8.84704 -8.71514 -8.68646 -6.89163 -5.77136 -3.10171 2.32166 2.48033 2.74025 3.29226 3.36600 3.41533 3.43294 3.65053 3.96330 4.40028 4.44111 4.50889 4.62350 4.71480 4.88225 4.93322 4.99430 5.07272 5.12015 5.14730 5.24575 5.30621 5.32002 5.40433 5.43237 5.52518 5.52607 5.57265 5.59406 5.66809 5.78227 5.90250 5.92388 6.07478 6.09256 6.13800 6.37910 6.39322 6.51003 6.59970 6.64196 6.68239 6.88246 7.23990 7.36605 7.46118 7.63238 7.71607 8.18280 8.22431 8.34546 9.15671 9.76416 10.42138 11.34915 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.002278 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.887647 B =12286.450404 C =13510.122360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.162 3.838 4 N -0.535 5.535 5 C 0.055 3.945 6 C -0.107 4.107 7 C -0.110 4.110 8 C 0.516 3.484 9 O -0.543 6.543 10 N -0.726 5.726 11 C 0.140 3.860 12 C -0.109 4.109 13 H 0.088 0.912 14 C 0.145 3.855 15 N -0.603 5.603 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.925 5.925 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.153 3.847 25 C 0.082 3.918 26 H 0.057 0.943 27 O -0.564 6.564 28 C -0.095 4.095 29 C 0.056 3.944 30 H 0.218 0.782 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.399 0.601 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.025 0.975 43 H 0.252 0.748 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.375 0.625 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.038 0.962 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 -22.443 7.152 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.186 4.186 3 C 0.036 3.964 4 N -0.261 5.261 5 C -0.073 4.073 6 C -0.145 4.145 7 C -0.131 4.131 8 C 0.302 3.698 9 O -0.420 6.420 10 N -0.377 5.377 11 C 0.016 3.984 12 C -0.129 4.129 13 H 0.106 0.894 14 C 0.019 3.981 15 N -0.330 5.330 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.573 5.573 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.028 3.972 25 C 0.022 3.978 26 H 0.075 0.925 27 O -0.369 6.369 28 C -0.133 4.133 29 C -0.072 4.072 30 H 0.235 0.765 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.233 0.767 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.222 0.778 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.056 0.944 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.715 -23.148 6.633 24.232 hybrid contribution -0.572 1.976 1.115 2.340 sum -3.286 -21.172 7.748 22.783 Atomic orbital electron populations 1.24956 0.95959 1.00277 1.00093 1.22801 0.94252 1.00746 1.00768 1.19083 0.84810 0.98779 0.93770 1.62071 1.04367 1.13825 1.45795 1.22158 0.99044 0.88930 0.97177 1.21587 0.93305 1.00042 0.99572 1.21418 0.97111 0.97307 0.97309 1.20495 0.81148 0.81379 0.86761 1.90692 1.33377 1.69400 1.48558 1.46138 1.45326 1.17773 1.28447 1.21164 1.00206 0.90134 0.86849 1.22672 0.99520 0.93225 0.97467 0.89412 1.21562 0.97412 0.85384 0.93716 1.44377 1.84081 1.02790 1.01703 1.19065 1.41395 0.85783 0.89246 0.90401 1.24800 1.02130 0.97603 0.96024 1.69927 1.56162 1.22595 1.08572 0.86096 0.77672 0.82550 0.79306 1.21587 1.21666 1.20687 1.21859 1.01183 0.89657 0.84510 1.23115 0.81827 0.97421 0.95398 0.92539 1.86405 1.25030 1.70570 1.54926 1.21384 0.99558 0.93415 0.98923 1.22163 0.86961 1.00438 0.97605 0.76509 0.92414 0.88284 0.89900 0.94475 0.90686 0.90337 0.88793 0.76670 0.90289 0.91980 0.94632 0.95717 0.93723 0.92996 0.93200 0.77799 0.90469 0.90049 0.94420 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 19.01 29.55 0.56 -0.87 16 2 C -0.19 -1.54 11.51 -37.12 -0.43 -1.97 16 3 C 0.16 1.15 5.77 -6.61 -0.04 1.11 16 4 N -0.54 -4.47 4.79 -238.18 -1.14 -5.61 16 5 C 0.05 0.46 5.08 -3.83 -0.02 0.44 16 6 C -0.11 -0.94 5.26 -26.65 -0.14 -1.08 16 7 C -0.11 -1.09 2.59 -91.64 -0.24 -1.33 16 8 C 0.52 7.00 7.16 -10.99 -0.08 6.92 16 9 O -0.54 -9.46 15.98 5.56 0.09 -9.37 16 10 N -0.73 -9.51 5.31 -60.29 -0.32 -9.83 16 11 C 0.14 2.17 4.74 -4.04 -0.02 2.15 16 12 C -0.11 -1.84 3.03 -88.47 -0.27 -2.11 16 13 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 14 C 0.15 2.94 6.40 -2.52 -0.02 2.92 16 15 N -0.60 -15.11 3.39 -170.06 -0.58 -15.69 16 16 C -0.23 -6.23 10.28 -15.06 -0.15 -6.38 16 17 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -26.67 10.31 55.49 0.57 -26.10 16 20 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.15 3.58 5.14 -3.06 -0.02 3.57 16 25 C 0.08 1.50 4.09 -24.90 -0.10 1.40 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 O -0.56 -9.89 12.10 -35.23 -0.43 -10.31 16 28 C -0.09 -0.91 4.68 -26.65 -0.12 -1.04 16 29 C 0.06 0.42 5.42 -3.83 -0.02 0.40 16 30 H 0.22 0.92 7.80 -54.08 -0.42 0.49 16 31 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.72 6.36 -51.93 -0.33 0.39 16 34 H 0.04 0.30 8.14 -51.92 -0.42 -0.13 16 35 H 0.07 0.58 7.66 -51.93 -0.40 0.19 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 4.44 7.83 -40.82 -0.32 4.12 16 39 H 0.08 1.42 7.42 -51.93 -0.39 1.04 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 45 H 0.05 1.30 7.43 -51.93 -0.39 0.91 16 46 H 0.38 5.20 9.12 45.56 0.42 5.61 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 49 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -33.88 399.19 -9.66 -43.54 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.66 Total: 6.76 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.20 Total: 3.77 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -1.47 Total: -57.22 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.34 Total: -19.69 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.88 -9.66 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958723958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.888 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds