Wall clock time and date at job start Tue Mar 31 2020 18:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46902 * 109.46670 * 130.25924 * 3 2 1 5 5 C 1.46842 * 111.00006 * 45.79138 * 4 3 2 6 6 C 1.53041 * 109.52182 * 185.83625 * 5 4 3 7 7 C 1.53117 * 109.27666 * 300.81975 * 6 5 4 8 8 C 1.50707 * 109.52288 * 177.56251 * 7 6 5 9 9 O 1.21280 * 119.99740 * 240.32213 * 8 7 6 10 10 N 1.34769 * 120.00045 * 60.31641 * 8 7 6 11 11 C 1.46506 * 119.99831 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46848 * 179.97438 * 11 10 8 13 13 H 1.08994 * 110.89049 * 302.57100 * 12 11 10 14 14 C 1.54911 * 111.00053 * 66.45306 * 12 11 10 15 15 N 1.47433 * 104.83039 * 155.08344 * 14 12 11 16 16 C 1.36928 * 125.64960 * 155.83417 * 15 14 12 17 17 H 1.08003 * 120.00353 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99859 * 179.97438 * 16 15 14 19 19 N 1.31609 * 120.00219 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99741 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47301 * 90.00319 * 20 18 16 22 22 H 1.48500 * 109.46824 * 210.00387 * 20 18 16 23 23 H 1.48498 * 109.47364 * 329.99760 * 20 18 16 24 24 C 1.47026 * 108.70222 * 335.86657 * 15 14 12 25 25 C 1.54328 * 107.26831 * 1.06451 * 24 15 14 26 26 H 1.08997 * 110.71948 * 140.55427 * 25 24 15 27 27 O 1.42904 * 110.71529 * 263.82383 * 25 24 15 28 28 C 1.53124 * 109.16371 * 57.65667 * 7 6 5 29 29 C 1.46850 * 110.99680 * 170.00100 * 4 3 2 30 30 H 4.40881 * 5.52159 * 180.02562 * 4 1 2 31 31 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 32 32 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 33 33 H 1.08997 * 109.46253 * 305.85236 * 5 4 3 34 34 H 1.09008 * 109.46278 * 65.82293 * 5 4 3 35 35 H 1.09002 * 109.50396 * 180.88537 * 6 5 4 36 36 H 1.08992 * 109.50449 * 60.75971 * 6 5 4 37 37 H 1.09000 * 109.58005 * 297.71499 * 7 6 5 38 38 H 0.96996 * 120.00309 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.46821 * 299.99645 * 11 10 8 40 40 H 1.08994 * 109.47195 * 60.00044 * 11 10 8 41 41 H 1.08999 * 110.36674 * 273.91931 * 14 12 11 42 42 H 1.08998 * 110.36859 * 36.24663 * 14 12 11 43 43 H 0.97004 * 120.00197 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.88266 * 120.47304 * 24 15 14 45 45 H 1.08993 * 109.88347 * 241.49188 * 24 15 14 46 46 H 0.96699 * 114.00535 * 293.52263 * 27 25 24 47 47 H 1.08998 * 109.50391 * 182.40606 * 28 7 6 48 48 H 1.08997 * 109.53049 * 62.30139 * 28 7 6 49 49 H 1.08999 * 109.45996 * 294.17720 * 29 4 3 50 50 H 1.08998 * 109.46346 * 54.14090 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 0.8960 -1.0570 5 6 2.4087 2.1720 -1.0437 6 6 2.8409 3.0191 -2.2428 7 6 4.3498 3.2685 -2.1678 8 6 4.7915 4.0515 -3.3774 9 8 5.6101 3.5810 -4.1386 10 7 4.2767 5.2745 -3.6133 11 6 4.7057 6.0354 -4.7894 12 6 3.9745 7.3790 -4.8221 13 1 2.8944 7.2336 -4.8277 14 6 4.4079 8.2759 -3.6357 15 7 4.1535 9.6545 -4.0923 16 6 3.9341 10.7360 -3.2815 17 1 3.9391 10.6162 -2.2082 18 6 3.7063 11.9866 -3.8393 19 7 3.7017 12.1330 -5.1472 20 14 3.4076 13.4621 -2.7332 21 1 4.7038 14.1141 -2.4168 22 1 2.5229 14.4310 -3.4287 23 1 2.7586 13.0142 -1.4749 24 6 4.1737 9.6756 -5.5622 25 6 4.4283 8.2297 -6.0377 26 1 3.8245 8.0005 -6.9157 27 8 5.8162 8.0238 -6.3091 28 6 5.0806 1.9233 -2.1342 29 6 4.5834 1.1081 -0.9383 30 1 -1.0502 -0.0001 0.0004 31 1 3.0092 0.3479 0.9672 32 1 3.0098 -1.0104 -0.1831 33 1 1.3372 1.9806 -1.1016 34 1 2.6325 2.7077 -0.1210 35 1 2.3132 3.9726 -2.2239 36 1 2.6050 2.4900 -3.1660 37 1 4.5824 3.8321 -1.2643 38 1 3.6217 5.6507 -3.0048 39 1 5.7809 6.2076 -4.7384 40 1 4.4704 5.4721 -5.6923 41 1 3.8094 8.0522 -2.7527 42 1 5.4677 8.1366 -3.4221 43 1 3.5421 13.0068 -5.5369 44 1 3.2138 10.0267 -5.9411 45 1 4.9721 10.3296 -5.9126 46 1 6.1499 8.5331 -7.0603 47 1 6.1528 2.0940 -2.0378 48 1 4.8804 1.3768 -3.0558 49 1 4.7969 1.6487 -0.0163 50 1 5.0914 0.1439 -0.9197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958723958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:59 Heat of formation + Delta-G solvation = -29.503710 kcal Electronic energy + Delta-G solvation = -29045.115838 eV Core-core repulsion = 25073.215821 eV Total energy + Delta-G solvation = -3971.900016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.30809 -40.06640 -39.33388 -36.42135 -36.06199 -35.55630 -33.95172 -33.11740 -31.74523 -31.30961 -29.51786 -28.39179 -27.16309 -25.49981 -24.30520 -24.04521 -22.30227 -21.57296 -21.21013 -20.51581 -19.13215 -18.97618 -18.44882 -17.82775 -17.17427 -16.81557 -16.61415 -16.30329 -16.02549 -15.83260 -15.68931 -15.40228 -15.09482 -15.01697 -14.71346 -14.39795 -14.21440 -14.15050 -13.86015 -13.72603 -13.46221 -13.13992 -13.07024 -12.98929 -12.67503 -12.43873 -12.34380 -12.16028 -12.06975 -11.90369 -11.78317 -11.73513 -11.59739 -11.52841 -11.28498 -11.05032 -10.80497 -10.74341 -10.66368 -10.04079 -9.28086 -8.91678 -7.86489 -5.21637 1.45973 1.47629 1.56067 1.66669 1.76818 1.93573 2.21470 2.48415 3.08293 3.27623 3.35914 3.47515 3.56445 3.61410 3.78494 3.84990 3.91911 3.95750 4.01785 4.23343 4.26023 4.39544 4.43323 4.43601 4.55563 4.58776 4.59811 4.64206 4.71139 4.77229 4.83849 4.89917 4.92794 4.95138 5.01059 5.10864 5.13629 5.19368 5.33607 5.37524 5.41690 5.45653 5.54039 5.69861 6.03064 6.10086 6.17087 6.58209 6.71056 6.92309 7.08562 7.28031 7.75391 8.39909 9.23827 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.002278 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.887647 B =12286.450404 C =13510.122360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.215 4.215 3 C 0.161 3.839 4 N -0.549 5.549 5 C 0.058 3.942 6 C -0.101 4.101 7 C -0.102 4.102 8 C 0.515 3.485 9 O -0.585 6.585 10 N -0.718 5.718 11 C 0.155 3.845 12 C -0.092 4.092 13 H 0.107 0.893 14 C 0.144 3.856 15 N -0.625 5.625 16 C -0.240 4.240 17 H 0.084 0.916 18 C -0.067 4.067 19 N -0.952 5.952 20 Si 0.978 3.022 21 H -0.290 1.290 22 H -0.294 1.294 23 H -0.266 1.266 24 C 0.160 3.840 25 C 0.094 3.906 26 H 0.086 0.914 27 O -0.571 6.571 28 C -0.092 4.092 29 C 0.062 3.938 30 H 0.241 0.759 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.412 0.588 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.011 0.989 43 H 0.247 0.753 44 H 0.023 0.977 45 H 0.013 0.987 46 H 0.390 0.610 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.050 0.950 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -23.701 8.832 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.216 4.216 3 C 0.035 3.965 4 N -0.275 5.275 5 C -0.069 4.069 6 C -0.139 4.139 7 C -0.123 4.123 8 C 0.303 3.697 9 O -0.465 6.465 10 N -0.369 5.369 11 C 0.031 3.969 12 C -0.111 4.111 13 H 0.125 0.875 14 C 0.019 3.981 15 N -0.351 5.351 16 C -0.369 4.369 17 H 0.101 0.899 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.807 3.193 21 H -0.217 1.217 22 H -0.221 1.221 23 H -0.191 1.191 24 C 0.035 3.965 25 C 0.034 3.966 26 H 0.104 0.896 27 O -0.379 6.379 28 C -0.131 4.131 29 C -0.066 4.066 30 H 0.258 0.742 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.248 0.752 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.056 0.944 44 H 0.041 0.959 45 H 0.031 0.969 46 H 0.240 0.760 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.749 -24.430 8.341 26.085 hybrid contribution -0.220 2.341 0.585 2.423 sum -3.969 -22.088 8.925 24.152 Atomic orbital electron populations 1.25681 0.96858 0.99425 0.99252 1.23267 0.95088 1.01603 1.01612 1.19155 0.84415 0.99004 0.93896 1.62046 1.04659 1.13998 1.46771 1.22099 0.98841 0.88977 0.97007 1.21553 0.92383 1.00723 0.99265 1.21428 0.97856 0.97002 0.95990 1.21139 0.80187 0.81198 0.87198 1.90676 1.35289 1.70287 1.50227 1.46032 1.45389 1.17567 1.27955 1.20823 0.98455 0.89601 0.88012 1.22565 1.00638 0.92877 0.95049 0.87453 1.21668 0.96882 0.83816 0.95746 1.44704 1.83838 1.04200 1.02368 1.19467 1.40594 0.86868 0.89996 0.89859 1.25638 1.02667 1.00315 0.97383 1.70143 1.57267 1.22624 1.10087 0.85080 0.77220 0.78994 0.78050 1.21687 1.22063 1.19089 1.21676 0.98316 0.92512 0.84028 1.22970 0.82688 0.94074 0.96902 0.89626 1.86386 1.24755 1.70700 1.56028 1.21337 0.99335 0.93386 0.99015 1.22116 0.86712 1.00882 0.96843 0.74236 0.91284 0.87393 0.90264 0.93698 0.89327 0.91858 0.86897 0.75199 0.92782 0.91650 0.92827 0.97123 0.94400 0.95876 0.96876 0.76031 0.91043 0.92185 0.93205 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 19.01 74.32 1.41 -1.09 16 2 C -0.22 -3.23 11.51 31.13 0.36 -2.87 16 3 C 0.16 1.99 5.77 84.50 0.49 2.48 16 4 N -0.55 -8.16 4.79 -907.45 -4.35 -12.51 16 5 C 0.06 0.85 5.08 86.33 0.44 1.29 16 6 C -0.10 -1.59 5.26 30.65 0.16 -1.43 16 7 C -0.10 -1.84 2.59 -11.46 -0.03 -1.87 16 8 C 0.52 13.38 7.16 87.66 0.63 14.01 16 9 O -0.58 -20.27 15.98 -3.03 -0.05 -20.32 16 10 N -0.72 -17.50 5.31 -463.05 -2.46 -19.96 16 11 C 0.16 4.60 4.74 86.38 0.41 5.01 16 12 C -0.09 -2.93 3.03 -9.40 -0.03 -2.96 16 13 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 14 C 0.14 5.66 6.40 86.85 0.56 6.22 16 15 N -0.62 -31.39 3.39 -691.95 -2.35 -33.74 16 16 C -0.24 -13.23 10.28 84.04 0.86 -12.37 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 19 N -0.95 -56.27 10.31 21.65 0.22 -56.04 16 20 Si 0.98 45.10 29.55 68.60 2.03 47.12 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 C 0.16 7.62 5.14 86.73 0.45 8.07 16 25 C 0.09 3.32 4.09 31.78 0.13 3.45 16 26 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 27 O -0.57 -19.61 12.10 -148.98 -1.80 -21.41 16 28 C -0.09 -1.69 4.68 30.65 0.14 -1.54 16 29 C 0.06 0.81 5.42 86.32 0.47 1.28 16 30 H 0.24 1.49 7.80 -4.41 -0.03 1.45 16 31 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.23 6.36 -2.39 -0.02 1.22 16 34 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.09 1.14 7.66 -2.39 -0.02 1.12 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.41 8.04 7.83 -92.71 -0.73 7.32 16 39 H 0.05 1.91 7.42 -2.39 -0.02 1.89 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.01 0.46 8.00 -2.39 -0.02 0.44 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.02 1.22 7.38 -2.39 -0.02 1.20 16 45 H 0.01 0.71 7.43 -2.39 -0.02 0.69 16 46 H 0.39 10.60 9.12 -74.06 -0.68 9.93 16 47 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.06 1.35 8.04 -2.39 -0.02 1.33 16 49 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.09 1.01 8.12 -2.39 -0.02 0.99 16 Total: -1.00 -74.68 399.19 -2.31 -76.99 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.47 Total: 25.52 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.91 Total: 14.35 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -8.93 Total: -122.25 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.85 Total: -41.73 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.68 -2.31 -76.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958723958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.487 kcal (2) G-P(sol) polarization free energy of solvation -74.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds