Wall clock time and date at job start Tue Mar 31 2020 18:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 H 1.08995 * 109.47270 * 54.99955 * 3 2 1 5 5 C 1.53001 * 109.47048 * 294.99805 * 3 2 1 6 6 C 1.50699 * 109.46984 * 175.00167 * 3 2 1 7 7 C 1.41266 * 126.70554 * 85.25181 * 6 3 2 8 8 C 1.36821 * 103.84512 * 180.12849 * 7 6 3 9 9 C 1.47519 * 126.94329 * 179.91139 * 8 7 6 10 10 O 1.21579 * 119.99876 * 359.70472 * 9 8 7 11 11 N 1.34776 * 120.00137 * 179.70550 * 9 8 7 12 12 C 1.46499 * 120.00077 * 179.97438 * 11 9 8 13 13 H 1.08994 * 110.88689 * 322.57390 * 12 11 9 14 14 C 1.54907 * 111.00010 * 86.45742 * 12 11 9 15 15 N 1.47420 * 104.83524 * 81.06591 * 14 12 11 16 16 C 1.36932 * 125.65088 * 204.09015 * 15 14 12 17 17 H 1.08001 * 120.00072 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00288 * 0.04266 * 16 15 14 19 19 N 1.31619 * 119.99512 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00603 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46911 * 89.99498 * 20 18 16 22 22 H 1.48497 * 109.47297 * 210.00245 * 20 18 16 23 23 H 1.48507 * 109.46877 * 330.00101 * 20 18 16 24 24 C 1.47026 * 108.70428 * 24.12518 * 15 14 12 25 25 C 1.54330 * 107.26840 * 358.94103 * 24 15 14 26 26 C 1.53005 * 110.71673 * 96.16971 * 25 24 15 27 27 C 1.52994 * 110.71826 * 219.44364 * 25 24 15 28 28 O 1.34641 * 106.11257 * 359.64501 * 8 7 6 29 29 N 1.20881 * 111.47007 * 0.24509 * 28 8 7 30 30 H 1.08998 * 109.47419 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46543 * 300.00273 * 1 2 3 32 32 H 1.08997 * 109.47269 * 59.99495 * 1 2 3 33 33 H 1.09003 * 109.46715 * 239.99202 * 2 1 3 34 34 H 1.08998 * 109.46758 * 120.00375 * 2 1 3 35 35 H 1.09000 * 109.47122 * 60.00209 * 5 3 2 36 36 H 1.08998 * 109.47380 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.47253 * 300.00576 * 5 3 2 38 38 H 1.08000 * 128.07858 * 0.02562 * 7 6 3 39 39 H 0.97002 * 119.99742 * 0.02562 * 11 9 8 40 40 H 1.08997 * 110.36783 * 322.22310 * 14 12 11 41 41 H 1.08997 * 110.45914 * 199.94961 * 14 12 11 42 42 H 0.97003 * 120.00403 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.88351 * 118.35702 * 24 15 14 44 44 H 1.08998 * 109.88379 * 239.52492 * 24 15 14 45 45 H 1.08998 * 109.47047 * 61.45324 * 26 25 24 46 46 H 1.09000 * 109.46907 * 181.45365 * 26 25 24 47 47 H 1.09001 * 109.47302 * 301.45440 * 26 25 24 48 48 H 1.08994 * 109.47458 * 58.54762 * 27 25 24 49 49 H 1.09010 * 109.46817 * 178.55144 * 27 25 24 50 50 H 1.09000 * 109.47214 * 298.54123 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4442 0.1238 7 6 4.4760 1.3186 -0.9285 8 6 5.6890 1.3765 -0.2982 9 6 7.0204 1.2920 -0.9279 10 8 7.1155 1.1507 -2.1317 11 7 8.1312 1.3714 -0.1688 12 6 9.4533 1.2869 -0.7942 13 1 9.4505 0.5679 -1.6133 14 6 9.9281 2.6794 -1.2791 15 7 10.4617 3.3375 -0.0727 16 6 10.5640 4.6893 0.1199 17 1 10.9712 5.0739 1.0433 18 6 10.1439 5.5654 -0.8715 19 7 9.6468 5.0967 -1.9964 20 14 10.2827 7.4096 -0.6085 21 1 11.6031 7.8812 -1.0976 22 1 9.2019 8.0992 -1.3579 23 1 10.1534 7.7142 0.8392 24 6 10.8667 2.3019 0.8892 25 6 10.5423 0.9337 0.2531 26 6 11.7796 0.3471 -0.4294 27 6 9.9909 -0.0338 1.3022 28 8 5.4221 1.5321 1.0123 29 7 4.2318 1.5665 1.2203 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5140 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5490 2.1252 -1.3970 36 1 1.9991 3.1540 -1.3076 37 1 2.0699 1.5874 -2.1492 38 1 4.2787 1.2023 -1.9839 39 1 8.0552 1.4837 0.7917 40 1 9.0892 3.2473 -1.6814 41 1 10.7099 2.5747 -2.0313 42 1 9.3536 5.7088 -2.6895 43 1 11.9365 2.3755 1.0846 44 1 10.3091 2.4203 1.8182 45 1 12.5632 0.1898 0.3118 46 1 11.5217 -0.6051 -0.8931 47 1 12.1355 1.0386 -1.1932 48 1 9.0934 0.3906 1.7519 49 1 9.7450 -0.9835 0.8269 50 1 10.7417 -0.1982 2.0751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977237921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:37 Heat of formation + Delta-G solvation = 38.089027 kcal Electronic energy + Delta-G solvation = -30073.445215 eV Core-core repulsion = 26104.476239 eV Total energy + Delta-G solvation = -3968.968975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.93970 -39.76956 -37.95401 -37.31246 -33.94362 -33.37879 -33.05770 -31.76984 -30.70833 -29.71576 -28.23529 -26.91405 -25.62920 -25.52584 -24.29730 -23.11807 -22.79193 -21.15438 -20.30591 -19.63359 -18.88702 -17.89783 -17.64381 -16.73592 -16.18435 -15.92443 -15.25432 -15.04057 -14.72012 -14.34414 -14.03953 -13.94813 -13.86466 -13.76186 -13.53542 -13.21031 -12.97828 -12.70996 -12.42576 -12.22529 -12.09096 -11.95996 -11.80497 -11.64753 -11.44168 -11.33920 -11.22968 -11.18389 -11.03675 -10.91429 -10.78723 -10.45066 -10.23984 -10.07339 -10.04635 -9.91059 -9.79486 -9.70330 -9.61563 -8.70731 -8.49036 -6.82140 -5.63441 -3.06145 0.95735 2.06264 2.78145 3.31081 3.40515 3.45523 3.47716 3.50866 3.88103 4.41158 4.49063 4.62893 4.79037 4.86724 4.92667 5.08202 5.08530 5.19072 5.21230 5.25765 5.26666 5.34475 5.46277 5.52145 5.59574 5.62558 5.66574 5.73530 5.75014 5.75334 5.85920 5.94195 6.00350 6.02276 6.06351 6.07249 6.14101 6.23891 6.35811 6.47715 6.56577 6.61252 6.69209 6.91169 7.42263 7.61279 7.71062 7.88784 8.13908 8.37278 8.39268 9.21781 9.83360 10.46835 11.39486 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.003373 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.515376 B = 8299.823477 C = 9810.615913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.012 4.012 4 H 0.089 0.911 5 C -0.149 4.149 6 C 0.017 3.983 7 C -0.157 4.157 8 C -0.066 4.066 9 C 0.602 3.398 10 O -0.514 6.514 11 N -0.684 5.684 12 C 0.122 3.878 13 H 0.090 0.910 14 C 0.146 3.854 15 N -0.601 5.601 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.142 3.858 25 C -0.086 4.086 26 C -0.128 4.128 27 C -0.134 4.134 28 O 0.115 5.885 29 N -0.349 5.349 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.180 0.820 39 H 0.403 0.597 40 H 0.114 0.886 41 H 0.024 0.976 42 H 0.252 0.748 43 H 0.025 0.975 44 H 0.023 0.977 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.235 -12.823 3.925 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.031 4.031 4 H 0.107 0.893 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.179 4.179 8 C -0.132 4.132 9 C 0.384 3.616 10 O -0.390 6.390 11 N -0.333 5.333 12 C 0.017 3.983 13 H 0.108 0.892 14 C 0.020 3.980 15 N -0.327 5.327 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.566 5.566 20 Si 0.743 3.257 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.016 3.984 25 C -0.087 4.087 26 C -0.186 4.186 27 C -0.191 4.191 28 O 0.043 5.957 29 N -0.050 5.050 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.198 0.802 39 H 0.239 0.761 40 H 0.132 0.868 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.503 -12.554 4.239 18.218 hybrid contribution 0.172 1.092 -0.190 1.122 sum -12.331 -11.462 4.049 17.315 Atomic orbital electron populations 1.21819 0.95099 1.01900 1.02144 1.21561 0.96201 0.94895 1.02727 1.19580 0.85495 0.97753 1.00251 0.89315 1.21907 1.01828 1.00926 0.95959 1.23556 0.98689 1.03358 0.88538 1.22737 0.89468 1.03778 1.01940 1.24476 0.97665 1.07018 0.84078 1.16444 0.80997 0.78098 0.86070 1.90859 1.85263 1.50135 1.12707 1.45761 1.05440 1.71062 1.11077 1.22650 0.79514 1.01429 0.94707 0.89206 1.22322 0.99583 0.87640 0.88442 1.44452 1.72983 1.00982 1.14289 1.19025 1.35297 0.80017 1.00881 0.90528 1.24786 1.01346 0.98089 0.96284 1.69785 1.47649 1.32418 1.06719 0.86111 0.77222 0.85105 0.77278 1.21655 1.21726 1.20749 1.21434 0.97274 0.86861 0.92874 1.21841 0.95321 0.95966 0.95576 1.21690 0.96134 1.00169 1.00596 1.21749 1.00541 0.98555 0.98296 1.84972 1.19349 1.66362 1.25039 1.73698 0.89370 1.17629 1.24303 0.92491 0.92600 0.92148 0.91322 0.91744 0.91309 0.92020 0.91823 0.80247 0.76102 0.86824 0.95810 0.93687 0.95682 0.95888 0.92546 0.93026 0.91676 0.92814 0.92708 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.12 -0.96 5.38 -26.73 -0.14 -1.10 16 3 C -0.01 -0.11 2.85 -91.77 -0.26 -0.37 16 4 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.15 -1.25 8.56 37.16 0.32 -0.93 16 6 C 0.02 0.22 6.20 -82.16 -0.51 -0.29 16 7 C -0.16 -2.19 10.12 -38.94 -0.39 -2.59 16 8 C -0.07 -1.05 7.29 -36.31 -0.26 -1.32 16 9 C 0.60 10.92 7.82 -12.48 -0.10 10.82 16 10 O -0.51 -10.70 16.66 5.30 0.09 -10.61 16 11 N -0.68 -11.93 4.67 -52.78 -0.25 -12.18 16 12 C 0.12 2.26 2.56 -65.78 -0.17 2.09 16 13 H 0.09 1.65 7.63 -51.93 -0.40 1.25 16 14 C 0.15 3.49 5.26 -2.53 -0.01 3.47 16 15 N -0.60 -14.78 3.39 -170.08 -0.58 -15.35 16 16 C -0.22 -6.13 10.27 -15.06 -0.15 -6.29 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -26.92 10.09 55.49 0.56 -26.36 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.14 2.78 6.41 -3.06 -0.02 2.76 16 25 C -0.09 -1.37 0.81 -152.67 -0.12 -1.50 16 26 C -0.13 -1.85 8.44 37.16 0.31 -1.54 16 27 C -0.13 -1.71 8.16 37.15 0.30 -1.41 16 28 O 0.11 1.79 11.04 15.56 0.17 1.96 16 29 N -0.35 -5.26 12.04 33.52 0.40 -4.86 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.52 7.48 -51.93 -0.39 0.13 16 38 H 0.18 2.21 7.65 -52.49 -0.40 1.81 16 39 H 0.40 6.46 6.64 -40.82 -0.27 6.19 16 40 H 0.11 3.19 5.87 -51.93 -0.30 2.88 16 41 H 0.02 0.61 7.72 -51.93 -0.40 0.21 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.03 0.50 7.84 -51.93 -0.41 0.09 16 44 H 0.02 0.45 7.82 -51.93 -0.41 0.04 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 48 H 0.05 0.67 6.21 -51.93 -0.32 0.35 16 49 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 397.07 15.07 5.98 5.98 Total: -1.00 -31.35 397.07 -7.73 -39.09 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.14 Total: 4.31 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.95 Total: 0.83 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.14 Total: -58.75 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.26 Total: -8.65 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.35 -7.73 -39.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977237921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.175 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds