Wall clock time and date at job start Tue Mar 31 2020 18:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 H 1.08995 * 109.47270 * 54.99955 * 3 2 1 5 5 C 1.53001 * 109.47048 * 294.99805 * 3 2 1 6 6 C 1.50699 * 109.46984 * 175.00167 * 3 2 1 7 7 C 1.41266 * 126.70554 * 85.25181 * 6 3 2 8 8 C 1.36821 * 103.84512 * 180.12849 * 7 6 3 9 9 C 1.47519 * 126.94329 * 179.91139 * 8 7 6 10 10 O 1.21579 * 119.99876 * 359.70472 * 9 8 7 11 11 N 1.34776 * 120.00137 * 179.70550 * 9 8 7 12 12 C 1.46499 * 120.00077 * 179.97438 * 11 9 8 13 13 H 1.08994 * 110.88689 * 322.57390 * 12 11 9 14 14 C 1.54907 * 111.00010 * 86.45742 * 12 11 9 15 15 N 1.47420 * 104.83524 * 81.06591 * 14 12 11 16 16 C 1.36932 * 125.65088 * 204.09015 * 15 14 12 17 17 H 1.08001 * 120.00072 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00288 * 0.04266 * 16 15 14 19 19 N 1.31619 * 119.99512 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00603 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46911 * 89.99498 * 20 18 16 22 22 H 1.48497 * 109.47297 * 210.00245 * 20 18 16 23 23 H 1.48507 * 109.46877 * 330.00101 * 20 18 16 24 24 C 1.47026 * 108.70428 * 24.12518 * 15 14 12 25 25 C 1.54330 * 107.26840 * 358.94103 * 24 15 14 26 26 C 1.53005 * 110.71673 * 96.16971 * 25 24 15 27 27 C 1.52994 * 110.71826 * 219.44364 * 25 24 15 28 28 O 1.34641 * 106.11257 * 359.64501 * 8 7 6 29 29 N 1.20881 * 111.47007 * 0.24509 * 28 8 7 30 30 H 1.08998 * 109.47419 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46543 * 300.00273 * 1 2 3 32 32 H 1.08997 * 109.47269 * 59.99495 * 1 2 3 33 33 H 1.09003 * 109.46715 * 239.99202 * 2 1 3 34 34 H 1.08998 * 109.46758 * 120.00375 * 2 1 3 35 35 H 1.09000 * 109.47122 * 60.00209 * 5 3 2 36 36 H 1.08998 * 109.47380 * 180.02562 * 5 3 2 37 37 H 1.09002 * 109.47253 * 300.00576 * 5 3 2 38 38 H 1.08000 * 128.07858 * 0.02562 * 7 6 3 39 39 H 0.97002 * 119.99742 * 0.02562 * 11 9 8 40 40 H 1.08997 * 110.36783 * 322.22310 * 14 12 11 41 41 H 1.08997 * 110.45914 * 199.94961 * 14 12 11 42 42 H 0.97003 * 120.00403 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.88351 * 118.35702 * 24 15 14 44 44 H 1.08998 * 109.88379 * 239.52492 * 24 15 14 45 45 H 1.08998 * 109.47047 * 61.45324 * 26 25 24 46 46 H 1.09000 * 109.46907 * 181.45365 * 26 25 24 47 47 H 1.09001 * 109.47302 * 301.45440 * 26 25 24 48 48 H 1.08994 * 109.47458 * 58.54762 * 27 25 24 49 49 H 1.09010 * 109.46817 * 178.55144 * 27 25 24 50 50 H 1.09000 * 109.47214 * 298.54123 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4442 0.1238 7 6 4.4760 1.3186 -0.9285 8 6 5.6890 1.3765 -0.2982 9 6 7.0204 1.2920 -0.9279 10 8 7.1155 1.1507 -2.1317 11 7 8.1312 1.3714 -0.1688 12 6 9.4533 1.2869 -0.7942 13 1 9.4505 0.5679 -1.6133 14 6 9.9281 2.6794 -1.2791 15 7 10.4617 3.3375 -0.0727 16 6 10.5640 4.6893 0.1199 17 1 10.9712 5.0739 1.0433 18 6 10.1439 5.5654 -0.8715 19 7 9.6468 5.0967 -1.9964 20 14 10.2827 7.4096 -0.6085 21 1 11.6031 7.8812 -1.0976 22 1 9.2019 8.0992 -1.3579 23 1 10.1534 7.7142 0.8392 24 6 10.8667 2.3019 0.8892 25 6 10.5423 0.9337 0.2531 26 6 11.7796 0.3471 -0.4294 27 6 9.9909 -0.0338 1.3022 28 8 5.4221 1.5321 1.0123 29 7 4.2318 1.5665 1.2203 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5140 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5490 2.1252 -1.3970 36 1 1.9991 3.1540 -1.3076 37 1 2.0699 1.5874 -2.1492 38 1 4.2787 1.2023 -1.9839 39 1 8.0552 1.4837 0.7917 40 1 9.0892 3.2473 -1.6814 41 1 10.7099 2.5747 -2.0313 42 1 9.3536 5.7088 -2.6895 43 1 11.9365 2.3755 1.0846 44 1 10.3091 2.4203 1.8182 45 1 12.5632 0.1898 0.3118 46 1 11.5217 -0.6051 -0.8931 47 1 12.1355 1.0386 -1.1932 48 1 9.0934 0.3906 1.7519 49 1 9.7450 -0.9835 0.8269 50 1 10.7417 -0.1982 2.0751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977237921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:36 Heat of formation + Delta-G solvation = 19.380356 kcal Electronic energy + Delta-G solvation = -30074.256483 eV Core-core repulsion = 26104.476239 eV Total energy + Delta-G solvation = -3969.780244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.09592 -41.27901 -39.49093 -38.12909 -35.73790 -34.74165 -34.20926 -32.98237 -32.59870 -30.39262 -29.88491 -28.09030 -27.42792 -26.29828 -25.79499 -24.41329 -24.00465 -22.35423 -21.81757 -20.96881 -20.16139 -19.16371 -18.82476 -18.70408 -17.55688 -17.30170 -16.68588 -16.15750 -15.94652 -15.85503 -15.53542 -15.36075 -15.09608 -14.78474 -14.65029 -14.57762 -14.14939 -13.73710 -13.68093 -13.65967 -13.10012 -13.02598 -13.01608 -12.90385 -12.85201 -12.63496 -12.56912 -12.50968 -12.19727 -12.12347 -11.97472 -11.80723 -11.77898 -11.58162 -11.50605 -11.40165 -11.33142 -11.07939 -10.84621 -10.76585 -10.09392 -8.84296 -7.75552 -5.19827 -0.30775 0.96729 1.44198 1.45526 1.47835 1.54102 1.91362 2.17919 2.48677 2.90104 3.33373 3.36894 3.54338 3.68982 3.84092 3.87100 3.96322 3.97828 4.06516 4.07031 4.14944 4.40479 4.43783 4.50409 4.55131 4.61514 4.70896 4.74026 4.82974 4.84438 4.89595 4.94327 5.00757 5.02163 5.07747 5.11318 5.12807 5.18123 5.21020 5.25603 5.34739 5.37651 5.48001 5.48732 5.53762 5.61582 5.82356 6.30027 6.32075 6.90101 7.00691 7.10452 7.79866 8.42870 9.24864 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.003373 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.515376 B = 8299.823477 C = 9810.615913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.012 4.012 4 H 0.091 0.909 5 C -0.147 4.147 6 C 0.027 3.973 7 C -0.147 4.147 8 C -0.085 4.085 9 C 0.602 3.398 10 O -0.547 6.547 11 N -0.678 5.678 12 C 0.134 3.866 13 H 0.093 0.907 14 C 0.153 3.847 15 N -0.619 5.619 16 C -0.231 4.231 17 H 0.082 0.918 18 C -0.068 4.068 19 N -0.947 5.947 20 Si 0.974 3.026 21 H -0.287 1.287 22 H -0.299 1.299 23 H -0.268 1.268 24 C 0.135 3.865 25 C -0.071 4.071 26 C -0.126 4.126 27 C -0.128 4.128 28 O 0.105 5.895 29 N -0.363 5.363 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.195 0.805 39 H 0.411 0.589 40 H 0.070 0.930 41 H -0.006 1.006 42 H 0.243 0.757 43 H 0.028 0.972 44 H 0.032 0.968 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.036 0.964 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.346 -14.249 5.419 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.031 4.031 4 H 0.110 0.890 5 C -0.205 4.205 6 C -0.131 4.131 7 C -0.169 4.169 8 C -0.150 4.150 9 C 0.386 3.614 10 O -0.425 6.425 11 N -0.328 5.328 12 C 0.028 3.972 13 H 0.111 0.889 14 C 0.027 3.973 15 N -0.345 5.345 16 C -0.360 4.360 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.597 5.597 20 Si 0.803 3.197 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.193 1.193 24 C 0.011 3.989 25 C -0.072 4.072 26 C -0.183 4.183 27 C -0.185 4.185 28 O 0.035 5.965 29 N -0.066 5.066 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.213 0.787 39 H 0.248 0.752 40 H 0.088 0.912 41 H 0.012 0.988 42 H 0.053 0.947 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.584 -14.003 5.792 20.351 hybrid contribution 0.492 1.532 -0.633 1.729 sum -13.092 -12.471 5.158 18.802 Atomic orbital electron populations 1.21804 0.93438 1.02643 1.02750 1.21539 0.97570 0.93516 1.02394 1.19793 0.83085 0.99094 1.01176 0.89045 1.21929 1.03373 1.00015 0.95184 1.24106 1.00174 1.01355 0.87476 1.23054 0.88944 1.02070 1.02859 1.24160 0.97105 1.09009 0.84766 1.16674 0.81817 0.77171 0.85738 1.90833 1.85971 1.51637 1.14069 1.45686 1.04971 1.70716 1.11400 1.22373 0.80788 0.98002 0.96009 0.88869 1.21975 0.97088 0.90187 0.88072 1.44685 1.73175 1.01206 1.15402 1.19410 1.34119 0.81704 1.00800 0.89982 1.25586 1.01954 1.02162 0.96339 1.70085 1.49061 1.33098 1.07408 0.85127 0.76677 0.80264 0.77588 1.21433 1.22541 1.19331 1.21679 0.97337 0.87523 0.92391 1.21826 0.94956 0.95019 0.95443 1.21694 0.95842 1.00367 1.00438 1.21729 1.01031 0.98089 0.97691 1.84960 1.19766 1.67086 1.24662 1.73690 0.89305 1.18481 1.25165 0.91732 0.92391 0.91148 0.91061 0.92725 0.89016 0.93167 0.91440 0.78747 0.75168 0.91157 0.98829 0.94741 0.95371 0.94983 0.90367 0.90676 0.94512 0.92712 0.90964 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 71.98 0.70 -0.86 16 2 C -0.11 -1.63 5.38 30.59 0.16 -1.47 16 3 C -0.01 -0.22 2.85 -11.54 -0.03 -0.25 16 4 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 5 C -0.15 -2.18 8.56 71.98 0.62 -1.57 16 6 C 0.03 0.69 6.20 43.55 0.27 0.96 16 7 C -0.15 -4.02 10.12 22.68 0.23 -3.79 16 8 C -0.08 -2.70 7.29 24.39 0.18 -2.52 16 9 C 0.60 22.25 7.82 86.69 0.68 22.92 16 10 O -0.55 -23.42 16.66 -3.96 -0.07 -23.49 16 11 N -0.68 -23.75 4.67 -439.16 -2.05 -25.81 16 12 C 0.13 5.00 2.56 46.38 0.12 5.12 16 13 H 0.09 3.45 7.63 -2.39 -0.02 3.43 16 14 C 0.15 7.65 5.26 86.86 0.46 8.10 16 15 N -0.62 -31.07 3.39 -692.00 -2.35 -33.41 16 16 C -0.23 -12.88 10.27 84.03 0.86 -12.02 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 19 N -0.95 -58.11 10.09 21.65 0.22 -57.89 16 20 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.14 5.20 6.41 86.73 0.56 5.76 16 25 C -0.07 -2.17 0.81 -50.99 -0.04 -2.21 16 26 C -0.13 -3.40 8.44 71.98 0.61 -2.79 16 27 C -0.13 -2.85 8.16 71.98 0.59 -2.26 16 28 O 0.10 3.25 11.04 65.85 0.73 3.98 16 29 N -0.36 -10.73 12.04 -48.87 -0.59 -11.31 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.07 0.60 6.56 -2.39 -0.02 0.59 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.95 6.57 -2.39 -0.02 0.93 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.95 7.48 -2.39 -0.02 0.93 16 38 H 0.20 4.61 7.65 -2.91 -0.02 4.59 16 39 H 0.41 12.99 6.64 -92.71 -0.62 12.37 16 40 H 0.07 4.17 5.87 -2.39 -0.01 4.16 16 41 H -0.01 -0.33 7.72 -2.39 -0.02 -0.35 16 42 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.03 1.08 7.84 -2.39 -0.02 1.06 16 44 H 0.03 1.19 7.82 -2.39 -0.02 1.17 16 45 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.04 1.19 7.45 -2.39 -0.02 1.18 16 48 H 0.05 1.22 6.21 -2.39 -0.01 1.21 16 49 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 50 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -71.05 397.07 4.66 -66.39 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.32 Total: 23.17 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 6.41 Total: 9.67 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -4.77 Total: -128.43 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.66 Total: -19.51 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -71.05 4.66 -66.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977237921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.774 kcal (2) G-P(sol) polarization free energy of solvation -71.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds