Wall clock time and date at job start Tue Mar 31 2020 18:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47453 * 2 1 4 4 H 1.08999 * 109.47405 * 55.00220 * 3 2 1 5 5 C 1.52996 * 109.47434 * 295.00270 * 3 2 1 6 6 C 1.50700 * 109.47341 * 175.00400 * 3 2 1 7 7 C 1.41265 * 126.70633 * 84.71035 * 6 3 2 8 8 C 1.36821 * 103.84714 * 180.26740 * 7 6 3 9 9 C 1.47514 * 126.94293 * 180.02562 * 8 7 6 10 10 O 1.21584 * 120.00107 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00181 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00231 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.88568 * 34.29797 * 12 11 9 14 14 C 1.54902 * 111.00265 * 270.41840 * 12 11 9 15 15 N 1.47423 * 104.83474 * 278.93333 * 14 12 11 16 16 C 1.36935 * 125.65160 * 155.83680 * 15 14 12 17 17 H 1.07999 * 120.00033 * 180.02562 * 16 15 14 18 18 C 1.38809 * 119.99957 * 0.02576 * 16 15 14 19 19 N 1.31625 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00242 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47296 * 90.00081 * 20 18 16 22 22 H 1.48496 * 109.47598 * 210.00004 * 20 18 16 23 23 H 1.48504 * 109.47384 * 330.00373 * 20 18 16 24 24 C 1.47020 * 108.70217 * 335.87375 * 15 14 12 25 25 C 1.54428 * 107.28225 * 1.05827 * 24 15 14 26 26 C 1.52995 * 110.72786 * 263.84832 * 25 24 15 27 27 C 1.53004 * 110.76323 * 140.53979 * 25 24 15 28 28 O 1.34646 * 106.11434 * 359.97438 * 8 7 6 29 29 N 1.20881 * 111.46611 * 0.02562 * 28 8 7 30 30 H 1.08999 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46852 * 300.00017 * 1 2 3 32 32 H 1.09002 * 109.47286 * 59.99010 * 1 2 3 33 33 H 1.09009 * 109.46852 * 239.99982 * 2 1 3 34 34 H 1.08996 * 109.47392 * 120.00544 * 2 1 3 35 35 H 1.08999 * 109.47381 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47524 * 300.00305 * 5 3 2 37 37 H 1.09001 * 109.47328 * 59.99940 * 5 3 2 38 38 H 1.07998 * 128.07564 * 0.25975 * 7 6 3 39 39 H 0.97001 * 119.99316 * 0.02562 * 11 9 8 40 40 H 1.08995 * 110.37118 * 37.77400 * 14 12 11 41 41 H 1.09009 * 110.36534 * 160.09529 * 14 12 11 42 42 H 0.97000 * 120.00106 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.88500 * 120.47186 * 24 15 14 44 44 H 1.08997 * 109.88658 * 241.48668 * 24 15 14 45 45 H 1.08998 * 109.47686 * 173.46481 * 26 25 24 46 46 H 1.09002 * 109.47245 * 293.47036 * 26 25 24 47 47 H 1.09003 * 109.47097 * 53.46463 * 26 25 24 48 48 H 1.08999 * 109.47125 * 306.51629 * 27 25 24 49 49 H 1.08995 * 109.47025 * 66.51543 * 27 25 24 50 50 H 1.08997 * 109.47006 * 186.51383 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4442 0.1237 7 6 4.4759 1.3081 -0.9273 8 6 5.6889 1.3677 -0.2973 9 6 7.0201 1.2772 -0.9264 10 8 7.1153 1.1344 -2.1300 11 7 8.1310 1.3529 -0.1669 12 6 9.4530 1.2625 -0.7916 13 1 9.4486 1.7238 -1.7791 14 6 9.9314 -0.2088 -0.8682 15 7 10.4664 -0.5022 0.4738 16 6 10.5708 -1.7459 1.0371 17 1 10.9782 -1.8560 2.0312 18 6 10.1530 -2.8652 0.3304 19 7 9.6569 -2.7310 -0.8815 20 14 10.2960 -4.5619 1.0984 21 1 9.0501 -4.8746 1.8437 22 1 10.5007 -5.5732 0.0304 23 1 11.4507 -4.5871 2.0318 24 6 10.8686 0.7620 1.1077 25 6 10.5408 1.8979 0.1142 26 6 11.7765 2.2734 -0.7060 27 6 9.9863 3.1192 0.8505 28 8 5.4221 1.5269 1.0128 29 7 4.2319 1.5660 1.2203 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.9983 3.1543 -1.3071 36 1 2.0698 1.5875 -2.1492 37 1 0.5490 2.1253 -1.3968 38 1 4.2785 1.1854 -1.9820 39 1 8.0550 1.4665 0.7935 40 1 9.0941 -0.8687 -1.0953 41 1 10.7137 -0.3147 -1.6200 42 1 9.3653 -3.5132 -1.3755 43 1 10.3110 0.9066 2.0330 44 1 11.9380 0.7475 1.3179 45 1 11.4967 2.9915 -1.4767 46 1 12.5263 2.7171 -0.0509 47 1 12.1871 1.3790 -1.1746 48 1 9.1433 2.8170 1.4719 49 1 10.7658 3.5489 1.4797 50 1 9.6550 3.8616 0.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977237925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:43 Heat of formation + Delta-G solvation = 36.969106 kcal Electronic energy + Delta-G solvation = -30082.266883 eV Core-core repulsion = 26113.249344 eV Total energy + Delta-G solvation = -3969.017539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.94381 -39.76683 -37.95903 -37.30444 -33.93857 -33.37624 -33.06156 -31.77362 -30.71092 -29.71402 -28.23201 -26.91146 -25.63068 -25.52410 -24.30371 -23.11223 -22.78733 -21.14288 -20.29921 -19.65118 -18.88432 -17.89778 -17.64908 -16.74252 -16.18009 -15.93693 -15.23510 -15.03271 -14.71949 -14.31265 -14.07388 -13.97287 -13.84389 -13.76225 -13.52592 -13.19406 -12.98015 -12.75506 -12.42170 -12.22837 -12.08602 -11.94366 -11.79613 -11.64175 -11.44396 -11.32237 -11.21946 -11.18630 -11.03674 -10.88736 -10.77706 -10.46757 -10.25166 -10.07355 -10.05488 -9.91491 -9.80759 -9.70750 -9.62339 -8.71166 -8.49398 -6.82604 -5.64182 -3.06831 0.94949 2.05739 2.77664 3.29662 3.40243 3.45335 3.47402 3.50358 3.88019 4.41321 4.48638 4.64863 4.81104 4.87090 4.92813 5.08054 5.08911 5.19630 5.21598 5.26491 5.27392 5.33969 5.47343 5.51716 5.59633 5.62260 5.69959 5.71032 5.75566 5.78694 5.86986 5.94404 6.00177 6.04272 6.07224 6.07426 6.14610 6.24425 6.35464 6.47684 6.56374 6.60352 6.69603 6.91147 7.41552 7.60967 7.70672 7.87575 8.13528 8.36170 8.38348 9.21212 9.82780 10.46207 11.38889 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003525 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.936437 B = 7942.333147 C = 9655.565049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.011 4.011 4 H 0.088 0.912 5 C -0.147 4.147 6 C 0.016 3.984 7 C -0.157 4.157 8 C -0.066 4.066 9 C 0.602 3.398 10 O -0.515 6.515 11 N -0.683 5.683 12 C 0.121 3.879 13 H 0.092 0.908 14 C 0.146 3.854 15 N -0.601 5.601 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.141 3.859 25 C -0.086 4.086 26 C -0.128 4.128 27 C -0.133 4.133 28 O 0.115 5.885 29 N -0.349 5.349 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.180 0.820 39 H 0.403 0.597 40 H 0.114 0.886 41 H 0.024 0.976 42 H 0.252 0.748 43 H 0.023 0.977 44 H 0.025 0.975 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.056 0.944 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.235 12.611 0.296 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.030 4.030 4 H 0.106 0.894 5 C -0.205 4.205 6 C -0.142 4.142 7 C -0.179 4.179 8 C -0.133 4.133 9 C 0.384 3.616 10 O -0.392 6.392 11 N -0.332 5.332 12 C 0.016 3.984 13 H 0.109 0.891 14 C 0.020 3.980 15 N -0.327 5.327 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.743 3.257 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.015 3.985 25 C -0.087 4.087 26 C -0.186 4.186 27 C -0.191 4.191 28 O 0.043 5.957 29 N -0.050 5.050 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.197 0.803 39 H 0.239 0.761 40 H 0.131 0.869 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.482 12.432 0.667 17.629 hybrid contribution 0.151 -1.080 0.127 1.098 sum -12.331 11.351 0.794 16.779 Atomic orbital electron populations 1.21812 0.95085 1.01993 1.01984 1.21580 0.96191 0.94831 1.03037 1.19575 0.85470 0.97866 1.00105 0.89360 1.21895 1.01873 1.00622 0.96099 1.23564 0.98702 1.03380 0.88513 1.22734 0.89468 1.03694 1.02036 1.24466 0.97659 1.07110 0.84021 1.16449 0.81017 0.78014 0.86127 1.90855 1.85264 1.50000 1.13045 1.45734 1.05451 1.70944 1.11068 1.22681 0.79488 1.00762 0.95448 0.89052 1.22328 0.99513 0.89566 0.86586 1.44453 1.73010 1.00961 1.14282 1.19029 1.35334 0.82026 0.98842 0.90514 1.24778 1.01353 0.97874 0.96438 1.69785 1.47780 1.27991 1.11080 0.86115 0.77664 0.84043 0.77909 1.21687 1.21670 1.20755 1.21451 0.97311 0.85919 0.93772 1.21863 0.95332 0.95122 0.96411 1.21686 0.96174 1.01527 0.99197 1.21740 1.00544 0.96957 0.99838 1.84977 1.19349 1.66352 1.25004 1.73701 0.89374 1.17757 1.24142 0.92414 0.92644 0.92230 0.91196 0.91593 0.92232 0.91795 0.91309 0.80251 0.76080 0.86875 0.95783 0.93683 0.95914 0.95676 0.92996 0.92592 0.91669 0.92798 0.92540 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -1.10 5.38 -26.74 -0.14 -1.24 16 3 C -0.01 -0.11 2.85 -91.78 -0.26 -0.37 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 5 C -0.15 -1.14 8.57 37.16 0.32 -0.82 16 6 C 0.02 0.21 6.20 -82.16 -0.51 -0.29 16 7 C -0.16 -2.18 10.13 -38.95 -0.39 -2.57 16 8 C -0.07 -1.05 7.29 -36.32 -0.26 -1.32 16 9 C 0.60 10.85 7.82 -12.48 -0.10 10.76 16 10 O -0.52 -10.64 16.61 5.29 0.09 -10.55 16 11 N -0.68 -11.91 4.62 -52.78 -0.24 -12.15 16 12 C 0.12 2.25 2.61 -65.79 -0.17 2.07 16 13 H 0.09 1.68 7.53 -51.93 -0.39 1.29 16 14 C 0.15 3.47 5.27 -2.53 -0.01 3.46 16 15 N -0.60 -14.73 3.39 -170.02 -0.58 -15.30 16 16 C -0.22 -6.12 10.27 -15.06 -0.15 -6.27 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 20 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.14 2.77 6.41 -3.01 -0.02 2.75 16 25 C -0.09 -1.38 0.81 -152.62 -0.12 -1.50 16 26 C -0.13 -1.85 8.41 37.16 0.31 -1.54 16 27 C -0.13 -1.71 8.08 37.16 0.30 -1.41 16 28 O 0.12 1.79 11.04 15.54 0.17 1.97 16 29 N -0.35 -5.26 12.04 33.52 0.40 -4.85 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 33 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.49 7.49 -51.93 -0.39 0.10 16 37 H 0.07 0.42 6.57 -51.93 -0.34 0.08 16 38 H 0.18 2.19 7.66 -52.49 -0.40 1.78 16 39 H 0.40 6.51 6.86 -40.82 -0.28 6.23 16 40 H 0.11 3.16 5.87 -51.93 -0.30 2.85 16 41 H 0.02 0.62 7.80 -51.92 -0.41 0.21 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.02 0.44 7.77 -51.93 -0.40 0.04 16 44 H 0.03 0.50 7.85 -51.93 -0.41 0.09 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 1.07 7.57 -51.93 -0.39 0.68 16 48 H 0.05 0.68 6.42 -51.93 -0.33 0.35 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 397.44 15.07 5.99 5.99 Total: -1.00 -31.20 397.44 -7.76 -38.95 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.16 Total: 4.47 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -0.96 Total: 0.64 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.14 Total: -58.61 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.26 Total: -8.59 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.20 -7.76 -38.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977237925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.921 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds