Wall clock time and date at job start Tue Mar 31 2020 18:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47453 * 2 1 4 4 H 1.08999 * 109.47405 * 55.00220 * 3 2 1 5 5 C 1.52996 * 109.47434 * 295.00270 * 3 2 1 6 6 C 1.50700 * 109.47341 * 175.00400 * 3 2 1 7 7 C 1.41265 * 126.70633 * 84.71035 * 6 3 2 8 8 C 1.36821 * 103.84714 * 180.26740 * 7 6 3 9 9 C 1.47514 * 126.94293 * 180.02562 * 8 7 6 10 10 O 1.21584 * 120.00107 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00181 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00231 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.88568 * 34.29797 * 12 11 9 14 14 C 1.54902 * 111.00265 * 270.41840 * 12 11 9 15 15 N 1.47423 * 104.83474 * 278.93333 * 14 12 11 16 16 C 1.36935 * 125.65160 * 155.83680 * 15 14 12 17 17 H 1.07999 * 120.00033 * 180.02562 * 16 15 14 18 18 C 1.38809 * 119.99957 * 0.02576 * 16 15 14 19 19 N 1.31625 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00242 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47296 * 90.00081 * 20 18 16 22 22 H 1.48496 * 109.47598 * 210.00004 * 20 18 16 23 23 H 1.48504 * 109.47384 * 330.00373 * 20 18 16 24 24 C 1.47020 * 108.70217 * 335.87375 * 15 14 12 25 25 C 1.54428 * 107.28225 * 1.05827 * 24 15 14 26 26 C 1.52995 * 110.72786 * 263.84832 * 25 24 15 27 27 C 1.53004 * 110.76323 * 140.53979 * 25 24 15 28 28 O 1.34646 * 106.11434 * 359.97438 * 8 7 6 29 29 N 1.20881 * 111.46611 * 0.02562 * 28 8 7 30 30 H 1.08999 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46852 * 300.00017 * 1 2 3 32 32 H 1.09002 * 109.47286 * 59.99010 * 1 2 3 33 33 H 1.09009 * 109.46852 * 239.99982 * 2 1 3 34 34 H 1.08996 * 109.47392 * 120.00544 * 2 1 3 35 35 H 1.08999 * 109.47381 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47524 * 300.00305 * 5 3 2 37 37 H 1.09001 * 109.47328 * 59.99940 * 5 3 2 38 38 H 1.07998 * 128.07564 * 0.25975 * 7 6 3 39 39 H 0.97001 * 119.99316 * 0.02562 * 11 9 8 40 40 H 1.08995 * 110.37118 * 37.77400 * 14 12 11 41 41 H 1.09009 * 110.36534 * 160.09529 * 14 12 11 42 42 H 0.97000 * 120.00106 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.88500 * 120.47186 * 24 15 14 44 44 H 1.08997 * 109.88658 * 241.48668 * 24 15 14 45 45 H 1.08998 * 109.47686 * 173.46481 * 26 25 24 46 46 H 1.09002 * 109.47245 * 293.47036 * 26 25 24 47 47 H 1.09003 * 109.47097 * 53.46463 * 26 25 24 48 48 H 1.08999 * 109.47125 * 306.51629 * 27 25 24 49 49 H 1.08995 * 109.47025 * 66.51543 * 27 25 24 50 50 H 1.08997 * 109.47006 * 186.51383 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4442 0.1237 7 6 4.4759 1.3081 -0.9273 8 6 5.6889 1.3677 -0.2973 9 6 7.0201 1.2772 -0.9264 10 8 7.1153 1.1344 -2.1300 11 7 8.1310 1.3529 -0.1669 12 6 9.4530 1.2625 -0.7916 13 1 9.4486 1.7238 -1.7791 14 6 9.9314 -0.2088 -0.8682 15 7 10.4664 -0.5022 0.4738 16 6 10.5708 -1.7459 1.0371 17 1 10.9782 -1.8560 2.0312 18 6 10.1530 -2.8652 0.3304 19 7 9.6569 -2.7310 -0.8815 20 14 10.2960 -4.5619 1.0984 21 1 9.0501 -4.8746 1.8437 22 1 10.5007 -5.5732 0.0304 23 1 11.4507 -4.5871 2.0318 24 6 10.8686 0.7620 1.1077 25 6 10.5408 1.8979 0.1142 26 6 11.7765 2.2734 -0.7060 27 6 9.9863 3.1192 0.8505 28 8 5.4221 1.5269 1.0128 29 7 4.2319 1.5660 1.2203 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.9983 3.1543 -1.3071 36 1 2.0698 1.5875 -2.1492 37 1 0.5490 2.1253 -1.3968 38 1 4.2785 1.1854 -1.9820 39 1 8.0550 1.4665 0.7935 40 1 9.0941 -0.8687 -1.0953 41 1 10.7137 -0.3147 -1.6200 42 1 9.3653 -3.5132 -1.3755 43 1 10.3110 0.9066 2.0330 44 1 11.9380 0.7475 1.3179 45 1 11.4967 2.9915 -1.4767 46 1 12.5263 2.7171 -0.0509 47 1 12.1871 1.3790 -1.1746 48 1 9.1433 2.8170 1.4719 49 1 10.7658 3.5489 1.4797 50 1 9.6550 3.8616 0.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977237925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:42 Heat of formation + Delta-G solvation = 18.438076 kcal Electronic energy + Delta-G solvation = -30083.070449 eV Core-core repulsion = 26113.249344 eV Total energy + Delta-G solvation = -3969.821105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.09610 -41.27254 -39.49319 -38.13211 -35.73011 -34.74657 -34.21597 -32.98341 -32.59915 -30.39568 -29.88188 -28.08795 -27.42780 -26.28952 -25.79700 -24.41183 -24.01410 -22.34536 -21.83341 -20.97449 -20.16128 -19.16158 -18.82723 -18.70813 -17.55299 -17.30678 -16.68141 -16.14136 -15.94198 -15.87109 -15.53697 -15.37425 -15.10391 -14.78846 -14.64978 -14.56255 -14.18860 -13.74555 -13.67952 -13.66386 -13.05802 -13.02624 -13.00589 -12.91265 -12.85484 -12.62017 -12.56836 -12.51575 -12.19541 -12.13078 -11.97218 -11.82205 -11.78203 -11.60375 -11.51488 -11.40177 -11.34227 -11.08398 -10.84968 -10.76696 -10.09254 -8.84296 -7.75910 -5.20060 -0.31034 0.96531 1.44391 1.45414 1.47962 1.54250 1.90568 2.17710 2.48643 2.90578 3.33402 3.37072 3.54415 3.68846 3.84114 3.86912 3.96234 3.97194 4.06057 4.07564 4.13190 4.40640 4.44285 4.50374 4.54845 4.59774 4.70776 4.73767 4.83858 4.84803 4.88587 4.94208 5.01660 5.02185 5.07369 5.11633 5.11994 5.17010 5.20591 5.25423 5.34768 5.37424 5.47368 5.47999 5.53721 5.61257 5.81715 6.29563 6.31667 6.89542 7.00379 7.10358 7.79669 8.42660 9.24737 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003525 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.936437 B = 7942.333147 C = 9655.565049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.011 4.011 4 H 0.095 0.905 5 C -0.145 4.145 6 C 0.027 3.973 7 C -0.146 4.146 8 C -0.085 4.085 9 C 0.603 3.397 10 O -0.547 6.547 11 N -0.678 5.678 12 C 0.133 3.867 13 H 0.094 0.906 14 C 0.153 3.847 15 N -0.618 5.618 16 C -0.232 4.232 17 H 0.082 0.918 18 C -0.066 4.066 19 N -0.947 5.947 20 Si 0.974 3.026 21 H -0.289 1.289 22 H -0.297 1.297 23 H -0.268 1.268 24 C 0.136 3.864 25 C -0.072 4.072 26 C -0.126 4.126 27 C -0.127 4.127 28 O 0.104 5.896 29 N -0.364 5.364 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.196 0.804 39 H 0.410 0.590 40 H 0.070 0.930 41 H -0.005 1.005 42 H 0.243 0.757 43 H 0.032 0.968 44 H 0.028 0.972 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.036 0.964 48 H 0.054 0.946 49 H 0.078 0.922 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.368 14.488 1.264 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.030 4.030 4 H 0.114 0.886 5 C -0.202 4.202 6 C -0.132 4.132 7 C -0.169 4.169 8 C -0.151 4.151 9 C 0.386 3.614 10 O -0.426 6.426 11 N -0.327 5.327 12 C 0.028 3.972 13 H 0.112 0.888 14 C 0.027 3.973 15 N -0.344 5.344 16 C -0.361 4.361 17 H 0.100 0.900 18 C -0.259 4.259 19 N -0.597 5.597 20 Si 0.803 3.197 21 H -0.217 1.217 22 H -0.224 1.224 23 H -0.193 1.193 24 C 0.011 3.989 25 C -0.073 4.073 26 C -0.183 4.183 27 C -0.185 4.185 28 O 0.035 5.965 29 N -0.067 5.067 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.213 0.787 39 H 0.248 0.752 40 H 0.088 0.912 41 H 0.012 0.988 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.097 0.903 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.587 14.345 1.682 19.830 hybrid contribution 0.476 -1.665 -0.152 1.739 sum -13.111 12.680 1.530 18.303 Atomic orbital electron populations 1.21790 0.93124 1.02519 1.02994 1.21575 0.97879 0.94203 1.01952 1.19785 0.83035 0.98502 1.01678 0.88637 1.21911 1.03344 1.00279 0.94694 1.24123 1.00203 1.01381 0.87446 1.23058 0.88905 1.01908 1.02986 1.24159 0.97128 1.09128 0.84674 1.16669 0.81799 0.77059 0.85827 1.90830 1.85949 1.51418 1.14379 1.45659 1.05017 1.70601 1.11399 1.22400 0.80757 0.97320 0.96752 0.88768 1.21983 0.97055 0.92377 0.85926 1.44678 1.73194 1.01903 1.14659 1.19417 1.34181 0.83460 0.99012 0.89972 1.25566 1.01944 1.01348 0.97027 1.70081 1.49192 1.28054 1.12400 0.85138 0.77830 0.79750 0.76990 1.21674 1.22365 1.19276 1.21691 0.97365 0.85075 0.94784 1.21847 0.94970 0.95181 0.95271 1.21689 0.95827 1.00911 0.99896 1.21717 1.01175 0.95408 1.00161 1.84964 1.19774 1.67101 1.24674 1.73693 0.89315 1.18637 1.25023 0.92200 0.92083 0.90746 0.91591 0.93442 0.92178 0.91732 0.89119 0.78678 0.75234 0.91188 0.98758 0.94717 0.94989 0.95393 0.90889 0.90198 0.94497 0.92680 0.90277 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 71.98 0.70 -1.07 16 2 C -0.12 -2.02 5.38 30.59 0.16 -1.85 16 3 C -0.01 -0.19 2.85 -11.54 -0.03 -0.22 16 4 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 5 C -0.14 -1.87 8.57 71.98 0.62 -1.25 16 6 C 0.03 0.67 6.20 43.55 0.27 0.94 16 7 C -0.15 -3.97 10.13 22.68 0.23 -3.74 16 8 C -0.09 -2.70 7.29 24.39 0.18 -2.53 16 9 C 0.60 22.10 7.82 86.69 0.68 22.78 16 10 O -0.55 -23.17 16.61 -3.98 -0.07 -23.24 16 11 N -0.68 -23.75 4.62 -439.15 -2.03 -25.78 16 12 C 0.13 4.98 2.61 46.38 0.12 5.10 16 13 H 0.09 3.50 7.53 -2.39 -0.02 3.48 16 14 C 0.15 7.62 5.27 86.85 0.46 8.07 16 15 N -0.62 -30.96 3.39 -691.81 -2.35 -33.31 16 16 C -0.23 -12.87 10.27 84.03 0.86 -12.01 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 19 N -0.95 -57.99 10.09 21.65 0.22 -57.77 16 20 Si 0.97 46.57 29.55 68.60 2.03 48.59 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.14 5.20 6.41 86.77 0.56 5.76 16 25 C -0.07 -2.18 0.81 -50.96 -0.04 -2.22 16 26 C -0.13 -3.40 8.41 71.98 0.61 -2.80 16 27 C -0.13 -2.86 8.08 71.98 0.58 -2.28 16 28 O 0.10 3.25 11.04 65.79 0.73 3.97 16 29 N -0.36 -10.74 12.04 -48.85 -0.59 -11.33 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.07 0.68 6.56 -2.39 -0.02 0.67 16 33 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.84 7.49 -2.39 -0.02 0.82 16 37 H 0.09 0.80 6.57 -2.39 -0.02 0.78 16 38 H 0.20 4.55 7.66 -2.91 -0.02 4.53 16 39 H 0.41 13.12 6.86 -92.71 -0.64 12.49 16 40 H 0.07 4.14 5.87 -2.39 -0.01 4.13 16 41 H -0.01 -0.29 7.80 -2.38 -0.02 -0.31 16 42 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.03 1.18 7.77 -2.39 -0.02 1.16 16 44 H 0.03 1.07 7.85 -2.39 -0.02 1.05 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.04 1.20 7.57 -2.39 -0.02 1.18 16 48 H 0.05 1.24 6.42 -2.39 -0.02 1.22 16 49 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -70.72 397.44 4.66 -66.06 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.30 Total: 23.45 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.41 Total: 9.34 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -4.75 Total: -128.19 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.66 Total: -19.26 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -70.72 4.66 -66.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977237925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.502 kcal (2) G-P(sol) polarization free energy of solvation -70.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds