Wall clock time and date at job start Tue Mar 31 2020 19:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47337 * 2 1 4 4 N 1.46498 * 109.47353 * 120.00140 * 2 1 3 5 5 C 1.46757 * 124.35130 * 119.99903 * 4 2 1 6 6 C 1.54485 * 105.47860 * 197.03835 * 5 4 2 7 7 H 1.08996 * 111.00491 * 216.45412 * 6 5 4 8 8 C 1.50694 * 110.96656 * 92.70073 * 6 5 4 9 9 O 1.21283 * 120.00600 * 6.17074 * 8 6 5 10 10 N 1.34785 * 119.99822 * 186.17234 * 8 6 5 11 11 C 1.46497 * 120.00099 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47293 * 179.97438 * 11 10 8 13 13 H 1.09008 * 115.51550 * 330.58800 * 12 11 10 14 14 C 1.53001 * 117.44517 * 185.16585 * 12 11 10 15 15 H 1.09001 * 119.53817 * 5.76565 * 14 12 11 16 16 C 1.54392 * 118.12002 * 160.85377 * 14 12 11 17 17 N 1.48144 * 104.61594 * 87.19307 * 16 14 12 18 18 C 1.36939 * 127.83596 * 140.41022 * 17 16 14 19 19 H 1.07997 * 120.00311 * 195.57194 * 18 17 16 20 20 C 1.38816 * 119.99955 * 15.57527 * 18 17 16 21 21 N 1.31621 * 120.00039 * 9.09362 * 20 18 17 22 22 Si 1.86801 * 119.99828 * 189.09663 * 20 18 17 23 23 H 1.48495 * 109.47087 * 59.99952 * 22 20 18 24 24 H 1.48498 * 109.47018 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47141 * 299.99903 * 22 20 18 26 26 C 1.48143 * 104.32575 * 320.41465 * 17 16 14 27 27 C 1.53002 * 117.40547 * 115.93763 * 12 11 10 28 28 H 1.08997 * 119.54100 * 355.90541 * 27 12 11 29 29 C 1.54630 * 101.76174 * 334.58508 * 6 5 4 30 30 C 1.34419 * 124.35013 * 300.02444 * 4 2 1 31 31 O 1.21281 * 124.94027 * 359.53662 * 30 4 2 32 32 H 1.09000 * 109.47013 * 59.99949 * 1 2 3 33 33 H 1.08996 * 109.47271 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47089 * 299.99957 * 1 2 3 35 35 H 1.09004 * 109.47089 * 240.00043 * 2 1 3 36 36 H 1.09000 * 109.47691 * 180.02562 * 3 2 1 37 37 H 1.08998 * 109.47345 * 300.00478 * 3 2 1 38 38 H 1.09004 * 109.46996 * 59.99986 * 3 2 1 39 39 H 1.09004 * 110.24862 * 78.03595 * 5 4 2 40 40 H 1.09003 * 110.24922 * 316.04181 * 5 4 2 41 41 H 0.97005 * 120.00008 * 359.97438 * 10 8 6 42 42 H 1.09000 * 109.47077 * 60.00012 * 11 10 8 43 43 H 1.09004 * 109.47147 * 300.00194 * 11 10 8 44 44 H 1.09003 * 110.40400 * 205.97978 * 16 14 12 45 45 H 1.08994 * 110.40815 * 328.40637 * 16 14 12 46 46 H 0.96999 * 119.99726 * 180.02562 * 21 20 18 47 47 H 1.08999 * 110.40827 * 158.37068 * 26 17 16 48 48 H 1.09000 * 110.40489 * 280.68601 * 26 17 16 49 49 H 1.08996 * 110.48949 * 143.46928 * 29 6 5 50 50 H 1.09003 * 110.48782 * 266.11863 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8656 -1.8887 1.1727 6 6 2.7605 -2.4957 2.5894 7 1 3.7133 -2.9221 2.9034 8 6 1.6638 -3.5271 2.6542 9 8 1.0809 -3.8570 1.6430 10 7 1.3304 -4.0830 3.8359 11 6 0.2645 -5.0860 3.8989 12 6 0.0878 -5.5524 5.3453 13 1 0.9849 -5.5154 5.9635 14 6 -0.8997 -6.6922 5.6031 15 1 -1.3700 -7.1970 4.7591 16 6 -0.7770 -7.4757 6.9277 17 7 -1.5918 -6.7044 7.8951 18 6 -2.4200 -7.1904 8.8714 19 1 -3.1425 -6.5389 9.3403 20 6 -2.3309 -8.5206 9.2584 21 7 -1.3393 -9.2680 8.8218 22 14 -3.6183 -9.2498 10.3987 23 1 -4.9564 -9.1501 9.7627 24 1 -3.2989 -10.6767 10.6577 25 1 -3.6232 -8.5024 11.6819 26 6 -1.3074 -5.2881 7.5667 27 6 -1.2494 -5.2498 6.0244 28 1 -2.0001 -4.6626 5.4955 29 6 2.4033 -1.2539 3.4387 30 6 1.7477 -0.3086 2.4561 31 8 1.0761 0.6542 2.7610 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8899 38 1 1.6767 1.9563 0.8900 39 1 3.8983 -1.6163 0.9546 40 1 2.4970 -2.5970 0.4306 41 1 1.7967 -3.8194 4.6447 42 1 0.5298 -5.9379 3.2727 43 1 -0.6677 -4.6486 3.5413 44 1 -1.1770 -8.4831 6.8119 45 1 0.2629 -7.5138 7.2519 46 1 -1.2773 -10.1975 9.0919 47 1 -2.1076 -4.6450 7.9331 48 1 -0.3512 -4.9839 7.9925 49 1 1.7065 -1.5223 4.2327 50 1 3.3046 -0.8052 3.8563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978223678.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:38 Heat of formation + Delta-G solvation = -13.168784 kcal Electronic energy + Delta-G solvation = -28959.203042 eV Core-core repulsion = 24988.011361 eV Total energy + Delta-G solvation = -3971.191681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.29181 -39.56776 -38.72310 -36.59766 -35.27540 -35.08141 -33.38277 -31.10796 -30.45668 -28.10237 -27.46814 -27.43199 -27.14140 -25.08947 -23.27658 -22.76275 -21.19357 -20.66120 -19.73008 -19.30475 -19.17774 -17.87645 -17.07838 -16.83758 -16.21964 -15.96338 -15.64817 -15.20377 -14.81368 -14.49007 -14.37231 -14.10141 -13.95250 -13.94098 -13.68329 -13.40324 -13.04660 -12.90884 -12.73004 -12.63505 -12.47332 -12.20221 -12.05004 -11.95339 -11.86921 -11.57186 -11.42443 -11.27567 -11.13758 -10.83373 -10.68953 -10.34536 -10.18197 -10.10916 -9.88183 -9.75798 -9.47195 -9.17719 -9.02788 -9.00476 -8.65805 -6.89132 -5.81945 -3.16215 2.31290 2.36267 2.64025 2.91604 3.37587 3.42299 3.43385 3.85743 3.93415 4.08333 4.30959 4.44227 4.47781 4.61528 4.73014 4.82313 4.87057 4.90301 5.05234 5.17331 5.25515 5.28770 5.32998 5.33921 5.35958 5.41860 5.42523 5.46773 5.49355 5.60753 5.74805 5.83503 5.86766 5.87061 5.93714 6.00532 6.20412 6.25636 6.33824 6.52559 6.62798 6.67485 6.84662 6.88808 7.30009 7.33250 7.50329 7.69321 7.91293 7.99297 8.18813 9.08985 9.71732 10.48561 11.32332 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027958 B = 0.001950 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.260792 B =14359.133011 C =14647.650972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.154 3.846 3 C -0.167 4.167 4 N -0.612 5.612 5 C 0.115 3.885 6 C -0.126 4.126 7 H 0.127 0.873 8 C 0.518 3.482 9 O -0.535 6.535 10 N -0.719 5.719 11 C 0.155 3.845 12 C -0.152 4.152 13 H 0.103 0.897 14 C -0.162 4.162 15 H 0.103 0.897 16 C 0.183 3.817 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.154 3.846 27 C -0.168 4.168 28 H 0.103 0.897 29 C -0.149 4.149 30 C 0.519 3.481 31 O -0.526 6.526 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.403 0.597 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.023 0.977 46 H 0.255 0.745 47 H 0.050 0.950 48 H 0.024 0.976 49 H 0.108 0.892 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.762 16.344 -17.567 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.053 3.947 3 C -0.225 4.225 4 N -0.347 5.347 5 C -0.008 4.008 6 C -0.148 4.148 7 H 0.145 0.855 8 C 0.303 3.697 9 O -0.412 6.412 10 N -0.370 5.370 11 C 0.032 3.968 12 C -0.171 4.171 13 H 0.121 0.879 14 C -0.182 4.182 15 H 0.121 0.879 16 C 0.058 3.942 17 N -0.318 5.318 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.027 3.973 27 C -0.188 4.188 28 H 0.121 0.879 29 C -0.190 4.190 30 C 0.306 3.694 31 O -0.403 6.403 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.238 0.762 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.041 0.959 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.042 0.958 49 H 0.126 0.874 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.857 16.398 -18.027 27.101 hybrid contribution -0.332 -0.441 0.932 1.083 sum 11.524 15.957 -17.095 26.071 Atomic orbital electron populations 1.22181 0.94569 1.02823 1.03112 1.20926 0.94688 0.92846 0.86284 1.22186 1.01085 0.95843 1.03372 1.48380 1.51040 1.29026 1.06207 1.22021 0.95089 0.86866 0.96812 1.22326 1.00105 0.94942 0.97412 0.85468 1.20174 0.83959 0.81942 0.83585 1.90714 1.53587 1.62464 1.34443 1.46002 1.38634 1.42698 1.09709 1.20896 0.89903 0.90526 0.95506 1.22529 0.95005 1.04832 0.94726 0.87902 1.24203 1.01305 0.91209 1.01506 0.87858 1.21080 0.94195 0.96067 0.82894 1.45194 1.51416 0.98984 1.36178 1.18954 1.10237 0.94412 1.11980 0.90628 1.24900 0.98092 0.97427 0.99873 1.69884 1.30525 1.07508 1.48320 0.86183 0.80955 0.78128 0.80400 1.21064 1.21530 1.20974 1.21139 0.97862 0.88673 0.89578 1.23991 0.96848 1.00366 0.97629 0.87949 1.22425 1.03773 0.94335 0.98435 1.20714 0.79894 0.85019 0.83748 1.90712 1.39320 1.28815 1.81430 0.91535 0.92082 0.91112 0.89407 0.92572 0.91455 0.90972 0.90224 0.88378 0.76238 0.91008 0.91417 0.89184 0.95899 0.93499 0.93178 0.95815 0.87390 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.20 37.16 0.34 -1.26 16 2 C 0.15 1.27 3.47 -67.93 -0.24 1.04 16 3 C -0.17 -1.26 9.20 37.16 0.34 -0.92 16 4 N -0.61 -5.49 2.83 -164.84 -0.47 -5.95 16 5 C 0.12 0.78 6.68 -3.12 -0.02 0.76 16 6 C -0.13 -0.81 3.55 -90.14 -0.32 -1.13 16 7 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 8 C 0.52 5.39 7.16 -10.98 -0.08 5.31 16 9 O -0.54 -7.62 15.51 5.55 0.09 -7.53 16 10 N -0.72 -7.16 5.28 -60.30 -0.32 -7.48 16 11 C 0.15 1.94 5.95 -4.05 -0.02 1.92 16 12 C -0.15 -2.19 5.39 -90.62 -0.49 -2.68 16 13 H 0.10 1.45 8.04 -51.92 -0.42 1.03 16 14 C -0.16 -2.96 6.85 -89.22 -0.61 -3.57 16 15 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 16 C 0.18 4.30 5.70 -2.41 -0.01 4.29 16 17 N -0.59 -15.05 3.38 -168.86 -0.57 -15.62 16 18 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 19 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 20 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 21 N -0.92 -26.55 10.86 55.49 0.60 -25.94 16 22 Si 0.91 21.81 29.56 -169.99 -5.03 16.79 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.15 3.15 7.04 -2.41 -0.02 3.14 16 27 C -0.17 -2.90 6.74 -89.22 -0.60 -3.50 16 28 H 0.10 1.66 8.12 -51.93 -0.42 1.24 16 29 C -0.15 -1.05 6.39 -26.74 -0.17 -1.22 16 30 C 0.52 5.59 7.41 -10.86 -0.08 5.51 16 31 O -0.53 -7.60 15.12 5.56 0.08 -7.51 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.84 6.80 -51.93 -0.35 0.48 16 35 H 0.09 0.56 8.07 -51.93 -0.42 0.15 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.72 6.77 -51.93 -0.35 0.37 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.78 6.94 -51.93 -0.36 0.42 16 41 H 0.40 3.06 8.22 -40.82 -0.34 2.72 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 44 H 0.09 2.38 6.51 -51.93 -0.34 2.04 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.11 0.81 7.51 -51.93 -0.39 0.42 16 50 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 399.12 15.07 6.01 6.01 Total: -1.00 -34.42 399.12 -10.24 -44.67 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.42 Total: 1.62 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.23 Total: 0.95 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.75 Total: -54.99 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.17 Total: -15.04 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.42 -10.24 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978223678.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.497 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds