Wall clock time and date at job start Tue Mar 31 2020 19:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47337 * 2 1 4 4 N 1.46498 * 109.47353 * 120.00140 * 2 1 3 5 5 C 1.46757 * 124.35130 * 119.99903 * 4 2 1 6 6 C 1.54485 * 105.47860 * 197.03835 * 5 4 2 7 7 H 1.08996 * 111.00491 * 216.45412 * 6 5 4 8 8 C 1.50694 * 110.96656 * 92.70073 * 6 5 4 9 9 O 1.21283 * 120.00600 * 6.17074 * 8 6 5 10 10 N 1.34785 * 119.99822 * 186.17234 * 8 6 5 11 11 C 1.46497 * 120.00099 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47293 * 179.97438 * 11 10 8 13 13 H 1.09008 * 115.51550 * 330.58800 * 12 11 10 14 14 C 1.53001 * 117.44517 * 185.16585 * 12 11 10 15 15 H 1.09001 * 119.53817 * 5.76565 * 14 12 11 16 16 C 1.54392 * 118.12002 * 160.85377 * 14 12 11 17 17 N 1.48144 * 104.61594 * 87.19307 * 16 14 12 18 18 C 1.36939 * 127.83596 * 140.41022 * 17 16 14 19 19 H 1.07997 * 120.00311 * 195.57194 * 18 17 16 20 20 C 1.38816 * 119.99955 * 15.57527 * 18 17 16 21 21 N 1.31621 * 120.00039 * 9.09362 * 20 18 17 22 22 Si 1.86801 * 119.99828 * 189.09663 * 20 18 17 23 23 H 1.48495 * 109.47087 * 59.99952 * 22 20 18 24 24 H 1.48498 * 109.47018 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47141 * 299.99903 * 22 20 18 26 26 C 1.48143 * 104.32575 * 320.41465 * 17 16 14 27 27 C 1.53002 * 117.40547 * 115.93763 * 12 11 10 28 28 H 1.08997 * 119.54100 * 355.90541 * 27 12 11 29 29 C 1.54630 * 101.76174 * 334.58508 * 6 5 4 30 30 C 1.34419 * 124.35013 * 300.02444 * 4 2 1 31 31 O 1.21281 * 124.94027 * 359.53662 * 30 4 2 32 32 H 1.09000 * 109.47013 * 59.99949 * 1 2 3 33 33 H 1.08996 * 109.47271 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47089 * 299.99957 * 1 2 3 35 35 H 1.09004 * 109.47089 * 240.00043 * 2 1 3 36 36 H 1.09000 * 109.47691 * 180.02562 * 3 2 1 37 37 H 1.08998 * 109.47345 * 300.00478 * 3 2 1 38 38 H 1.09004 * 109.46996 * 59.99986 * 3 2 1 39 39 H 1.09004 * 110.24862 * 78.03595 * 5 4 2 40 40 H 1.09003 * 110.24922 * 316.04181 * 5 4 2 41 41 H 0.97005 * 120.00008 * 359.97438 * 10 8 6 42 42 H 1.09000 * 109.47077 * 60.00012 * 11 10 8 43 43 H 1.09004 * 109.47147 * 300.00194 * 11 10 8 44 44 H 1.09003 * 110.40400 * 205.97978 * 16 14 12 45 45 H 1.08994 * 110.40815 * 328.40637 * 16 14 12 46 46 H 0.96999 * 119.99726 * 180.02562 * 21 20 18 47 47 H 1.08999 * 110.40827 * 158.37068 * 26 17 16 48 48 H 1.09000 * 110.40489 * 280.68601 * 26 17 16 49 49 H 1.08996 * 110.48949 * 143.46928 * 29 6 5 50 50 H 1.09003 * 110.48782 * 266.11863 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8656 -1.8887 1.1727 6 6 2.7605 -2.4957 2.5894 7 1 3.7133 -2.9221 2.9034 8 6 1.6638 -3.5271 2.6542 9 8 1.0809 -3.8570 1.6430 10 7 1.3304 -4.0830 3.8359 11 6 0.2645 -5.0860 3.8989 12 6 0.0878 -5.5524 5.3453 13 1 0.9849 -5.5154 5.9635 14 6 -0.8997 -6.6922 5.6031 15 1 -1.3700 -7.1970 4.7591 16 6 -0.7770 -7.4757 6.9277 17 7 -1.5918 -6.7044 7.8951 18 6 -2.4200 -7.1904 8.8714 19 1 -3.1425 -6.5389 9.3403 20 6 -2.3309 -8.5206 9.2584 21 7 -1.3393 -9.2680 8.8218 22 14 -3.6183 -9.2498 10.3987 23 1 -4.9564 -9.1501 9.7627 24 1 -3.2989 -10.6767 10.6577 25 1 -3.6232 -8.5024 11.6819 26 6 -1.3074 -5.2881 7.5667 27 6 -1.2494 -5.2498 6.0244 28 1 -2.0001 -4.6626 5.4955 29 6 2.4033 -1.2539 3.4387 30 6 1.7477 -0.3086 2.4561 31 8 1.0761 0.6542 2.7610 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8899 38 1 1.6767 1.9563 0.8900 39 1 3.8983 -1.6163 0.9546 40 1 2.4970 -2.5970 0.4306 41 1 1.7967 -3.8194 4.6447 42 1 0.5298 -5.9379 3.2727 43 1 -0.6677 -4.6486 3.5413 44 1 -1.1770 -8.4831 6.8119 45 1 0.2629 -7.5138 7.2519 46 1 -1.2773 -10.1975 9.0919 47 1 -2.1076 -4.6450 7.9331 48 1 -0.3512 -4.9839 7.9925 49 1 1.7065 -1.5223 4.2327 50 1 3.3046 -0.8052 3.8563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978223678.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:38 Heat of formation + Delta-G solvation = -35.931036 kcal Electronic energy + Delta-G solvation = -28960.190087 eV Core-core repulsion = 24988.011361 eV Total energy + Delta-G solvation = -3972.178726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.99341 -40.67224 -39.98719 -37.40199 -36.34320 -35.91255 -34.98173 -32.76456 -31.32477 -29.00012 -28.82417 -28.57082 -28.15062 -26.70538 -24.13200 -23.41541 -22.77351 -21.81972 -20.91762 -20.74204 -19.90404 -18.86415 -18.58222 -17.73288 -17.18459 -16.84711 -16.68016 -16.41843 -16.04110 -15.86982 -15.34179 -15.16289 -14.98550 -14.68765 -14.63309 -14.55669 -14.44278 -14.28811 -13.67088 -13.52016 -13.34610 -13.19279 -13.15450 -12.90014 -12.85242 -12.69943 -12.61211 -12.54578 -12.33554 -12.23659 -12.09389 -11.98313 -11.96327 -11.76532 -11.07887 -10.86803 -10.70403 -10.64556 -10.52700 -10.04127 -9.68845 -8.90716 -7.92290 -5.28228 1.45687 1.48866 1.55288 1.56581 1.59141 2.01002 2.12718 2.47201 2.73345 3.25399 3.29720 3.36416 3.60722 3.68450 3.72813 3.83309 3.88374 3.99590 4.09110 4.20524 4.27249 4.28303 4.38869 4.42457 4.57093 4.61205 4.63645 4.65726 4.70004 4.72386 4.76359 4.84223 4.86791 4.89352 4.92381 4.93783 5.02280 5.19170 5.21559 5.28152 5.33347 5.44211 5.47242 5.53272 5.66600 5.69091 6.18063 6.19223 6.54538 7.01131 7.18271 7.22719 7.68120 8.46273 9.21138 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027958 B = 0.001950 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.260792 B =14359.133011 C =14647.650972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 C -0.158 4.158 4 N -0.613 5.613 5 C 0.112 3.888 6 C -0.112 4.112 7 H 0.174 0.826 8 C 0.514 3.486 9 O -0.578 6.578 10 N -0.712 5.712 11 C 0.164 3.836 12 C -0.105 4.105 13 H 0.115 0.885 14 C -0.177 4.177 15 H 0.111 0.889 16 C 0.189 3.811 17 N -0.621 5.621 18 C -0.242 4.242 19 H 0.078 0.922 20 C -0.062 4.062 21 N -0.946 5.946 22 Si 0.979 3.021 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.274 1.274 26 C 0.149 3.851 27 C -0.163 4.163 28 H 0.117 0.883 29 C -0.141 4.141 30 C 0.501 3.499 31 O -0.576 6.576 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.418 0.582 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.005 0.995 46 H 0.250 0.750 47 H 0.052 0.948 48 H 0.031 0.969 49 H 0.104 0.896 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.687 17.478 -18.504 29.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 C -0.216 4.216 4 N -0.347 5.347 5 C -0.011 4.011 6 C -0.133 4.133 7 H 0.191 0.809 8 C 0.301 3.699 9 O -0.457 6.457 10 N -0.364 5.364 11 C 0.040 3.960 12 C -0.124 4.124 13 H 0.133 0.867 14 C -0.197 4.197 15 H 0.129 0.871 16 C 0.064 3.936 17 N -0.346 5.346 18 C -0.371 4.371 19 H 0.096 0.904 20 C -0.256 4.256 21 N -0.593 5.593 22 Si 0.807 3.193 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.200 1.200 26 C 0.024 3.976 27 C -0.182 4.182 28 H 0.135 0.865 29 C -0.181 4.181 30 C 0.290 3.710 31 O -0.457 6.457 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.136 0.864 40 H 0.104 0.896 41 H 0.255 0.745 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.023 0.977 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.049 0.951 49 H 0.122 0.878 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.817 17.554 -18.970 29.307 hybrid contribution -0.931 -0.755 1.173 1.678 sum 12.885 16.799 -17.797 27.658 Atomic orbital electron populations 1.22126 0.96013 1.01429 1.02591 1.21089 0.93628 0.93684 0.87134 1.22099 1.01710 0.95149 1.02649 1.48583 1.50721 1.29394 1.05959 1.22262 0.96462 0.85685 0.96660 1.22403 1.00256 0.93359 0.97246 0.80883 1.20915 0.84229 0.82046 0.82703 1.90708 1.55180 1.63962 1.35870 1.45878 1.37942 1.41992 1.10610 1.20622 0.90578 0.91232 0.93565 1.22432 0.93951 1.00318 0.95739 0.86732 1.23895 1.04886 0.91388 0.99569 0.87066 1.20816 0.92540 0.95045 0.85242 1.45520 1.51420 1.01309 1.36321 1.19326 1.10617 0.94848 1.12329 0.90385 1.25730 1.00149 0.97889 1.01856 1.70076 1.32221 1.07339 1.49709 0.85149 0.78497 0.76938 0.78718 1.20517 1.21847 1.20011 1.21286 0.98175 0.86286 0.91872 1.23897 0.99359 0.99402 0.95563 0.86469 1.22465 1.04698 0.93591 0.97358 1.21450 0.79513 0.84999 0.85022 1.90684 1.41567 1.31098 1.82309 0.89613 0.93768 0.94064 0.87052 0.91352 0.89912 0.93913 0.86432 0.89636 0.74507 0.91031 0.92346 0.93002 0.97681 0.94084 0.92899 0.95097 0.87786 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.20 71.98 0.66 -2.47 16 2 C 0.15 2.23 3.47 44.99 0.16 2.38 16 3 C -0.16 -2.20 9.20 71.98 0.66 -1.54 16 4 N -0.61 -9.92 2.83 -794.04 -2.25 -12.16 16 5 C 0.11 1.12 6.68 86.84 0.58 1.70 16 6 C -0.11 -0.99 3.55 -10.48 -0.04 -1.02 16 7 H 0.17 0.04 8.14 -2.39 -0.02 0.02 16 8 C 0.51 9.31 7.16 87.65 0.63 9.94 16 9 O -0.58 -15.61 15.51 -3.04 -0.05 -15.65 16 10 N -0.71 -12.05 5.28 -463.06 -2.45 -14.50 16 11 C 0.16 3.75 5.95 86.38 0.51 4.26 16 12 C -0.11 -2.82 5.39 -10.79 -0.06 -2.88 16 13 H 0.11 2.89 8.04 -2.38 -0.02 2.87 16 14 C -0.18 -6.39 6.85 -9.88 -0.07 -6.46 16 15 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 16 C 0.19 9.11 5.70 86.54 0.49 9.60 16 17 N -0.62 -31.95 3.38 -688.16 -2.33 -34.28 16 18 C -0.24 -13.64 10.35 84.03 0.87 -12.77 16 19 H 0.08 4.21 7.84 -2.91 -0.02 4.19 16 20 C -0.06 -3.55 5.40 84.86 0.46 -3.09 16 21 N -0.95 -56.51 10.86 21.65 0.24 -56.28 16 22 Si 0.98 45.50 29.56 68.60 2.03 47.53 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 26 C 0.15 6.01 7.04 86.53 0.61 6.62 16 27 C -0.16 -5.35 6.74 -9.89 -0.07 -5.41 16 28 H 0.12 3.56 8.12 -2.39 -0.02 3.54 16 29 C -0.14 -1.54 6.39 30.59 0.20 -1.34 16 30 C 0.50 10.22 7.41 87.90 0.65 10.87 16 31 O -0.58 -16.97 15.12 -3.03 -0.05 -17.02 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 1.03 6.80 -2.39 -0.02 1.01 16 35 H 0.11 1.17 8.07 -2.39 -0.02 1.15 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.04 0.87 6.77 -2.39 -0.02 0.85 16 39 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 40 H 0.09 1.15 6.94 -2.39 -0.02 1.14 16 41 H 0.42 4.71 8.22 -92.70 -0.76 3.95 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.50 7.94 -2.38 -0.02 1.48 16 44 H 0.05 2.87 6.51 -2.39 -0.02 2.85 16 45 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 47 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.10 1.27 7.51 -2.39 -0.02 1.25 16 50 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -80.08 399.12 1.57 -78.51 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.17 Total: 15.45 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.25 Total: 8.40 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -6.78 Total: -117.22 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.09 Total: -32.67 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -80.08 1.57 -78.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978223678.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.576 kcal (2) G-P(sol) polarization free energy of solvation -80.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds