Wall clock time and date at job start Tue Mar 31 2020 19:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47171 * 2 1 4 4 N 1.46496 * 109.47497 * 120.00132 * 2 1 3 5 5 C 1.46859 * 124.34247 * 119.97343 * 4 2 1 6 6 C 1.54483 * 105.42614 * 197.02163 * 5 4 2 7 7 H 1.09009 * 110.96534 * 92.71720 * 6 5 4 8 8 C 1.50695 * 110.97299 * 216.43927 * 6 5 4 9 9 O 1.21284 * 119.99732 * 356.91595 * 8 6 5 10 10 N 1.34771 * 120.00318 * 176.91257 * 8 6 5 11 11 C 1.46500 * 120.00377 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47381 * 179.97438 * 11 10 8 13 13 H 1.09002 * 115.51385 * 330.41704 * 12 11 10 14 14 C 1.52999 * 117.44362 * 184.99907 * 12 11 10 15 15 H 1.09005 * 119.54029 * 4.12003 * 14 12 11 16 16 C 1.54389 * 118.12463 * 159.21225 * 14 12 11 17 17 N 1.48146 * 104.61525 * 87.18919 * 16 14 12 18 18 C 1.36941 * 127.83291 * 140.41740 * 17 16 14 19 19 H 1.07996 * 119.99569 * 195.57256 * 18 17 16 20 20 C 1.38811 * 120.00139 * 15.57236 * 18 17 16 21 21 N 1.31620 * 119.99914 * 9.09907 * 20 18 17 22 22 Si 1.86804 * 119.99843 * 189.10086 * 20 18 17 23 23 H 1.48495 * 109.46952 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46983 * 120.00062 * 22 20 18 25 25 H 1.48497 * 109.46988 * 239.99705 * 22 20 18 26 26 C 1.48144 * 104.32698 * 320.41599 * 17 16 14 27 27 C 1.52995 * 117.44143 * 115.75890 * 12 11 10 28 28 H 1.09001 * 119.54485 * 355.88641 * 27 12 11 29 29 C 1.54625 * 101.79729 * 334.58016 * 6 5 4 30 30 C 1.34424 * 124.34889 * 299.97823 * 4 2 1 31 31 O 1.21286 * 124.93937 * 359.54646 * 30 4 2 32 32 H 1.09004 * 109.46884 * 59.99770 * 1 2 3 33 33 H 1.08993 * 109.46667 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46678 * 299.99953 * 1 2 3 35 35 H 1.08997 * 109.47090 * 240.00390 * 2 1 3 36 36 H 1.08992 * 109.47378 * 180.02562 * 3 2 1 37 37 H 1.08996 * 109.47222 * 300.00538 * 3 2 1 38 38 H 1.09000 * 109.46992 * 59.99730 * 3 2 1 39 39 H 1.08999 * 110.25689 * 78.04518 * 5 4 2 40 40 H 1.08995 * 110.27727 * 316.01319 * 5 4 2 41 41 H 0.97003 * 120.00119 * 359.97438 * 10 8 6 42 42 H 1.09000 * 109.47154 * 300.00177 * 11 10 8 43 43 H 1.08998 * 109.47157 * 59.99659 * 11 10 8 44 44 H 1.08999 * 110.40643 * 205.97982 * 16 14 12 45 45 H 1.09001 * 110.40231 * 328.40530 * 16 14 12 46 46 H 0.97000 * 119.99715 * 180.02562 * 21 20 18 47 47 H 1.08997 * 110.40864 * 158.36866 * 26 17 16 48 48 H 1.09004 * 110.40721 * 280.68296 * 26 17 16 49 49 H 1.09011 * 110.48616 * 143.49116 * 29 6 5 50 50 H 1.08997 * 110.48600 * 266.12981 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8658 -1.8898 1.1724 6 6 2.7605 -2.4955 2.5896 7 1 1.9668 -3.2412 2.6371 8 6 4.0776 -3.0854 3.0233 9 8 5.0206 -3.0895 2.2607 10 7 4.2076 -3.6084 4.2586 11 6 5.4882 -4.1814 4.6805 12 6 5.3669 -4.7008 6.1144 13 1 4.6510 -4.1743 6.7456 14 6 6.6368 -5.2333 6.7813 15 1 7.5888 -5.1671 6.2544 16 6 6.6755 -5.3012 8.3232 17 7 6.0864 -6.6195 8.6543 18 6 6.4865 -7.4982 9.6254 19 1 6.1412 -8.5213 9.6033 20 6 7.3356 -7.0740 10.6382 21 7 7.6136 -5.7943 10.7711 22 14 8.0840 -8.3192 11.8125 23 1 7.6166 -9.6820 11.4526 24 1 9.5648 -8.2619 11.7170 25 1 7.6650 -8.0035 13.2017 26 6 4.9665 -6.7716 7.6965 27 6 5.5260 -6.2065 6.3347 28 1 5.6505 -6.8652 5.4753 29 6 2.4041 -1.2532 3.4386 30 6 1.7485 -0.3081 2.4562 31 8 1.0775 0.6552 2.7610 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 -0.3632 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6767 1.9563 0.8900 39 1 3.8985 -1.6180 0.9542 40 1 2.4968 -2.5985 0.4310 41 1 3.4535 -3.6047 4.8688 42 1 5.7543 -5.0041 4.0169 43 1 6.2616 -3.4145 4.6364 44 1 7.7037 -5.2436 8.6805 45 1 6.0771 -4.4984 8.7540 46 1 8.2073 -5.4979 11.4786 47 1 4.7053 -7.8235 7.5810 48 1 4.1004 -6.2002 8.0306 49 1 1.7075 -1.5212 4.2331 50 1 3.3058 -0.8049 3.8558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978223682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:41 Heat of formation + Delta-G solvation = -13.378714 kcal Electronic energy + Delta-G solvation = -28459.348176 eV Core-core repulsion = 24488.147392 eV Total energy + Delta-G solvation = -3971.200784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.25693 -39.68797 -38.67421 -36.67785 -35.33582 -35.09381 -33.41137 -31.14123 -30.51901 -28.17690 -27.57333 -27.41580 -27.00140 -25.10036 -23.27709 -22.81718 -21.17353 -20.68285 -19.77279 -19.32686 -19.24173 -17.85583 -17.03532 -16.84912 -16.39851 -16.13039 -15.45388 -15.36742 -14.81497 -14.49633 -14.36434 -14.16285 -14.08348 -13.93388 -13.85665 -13.40471 -13.09881 -13.03830 -12.81222 -12.69250 -12.45198 -12.39692 -12.02557 -11.92391 -11.73964 -11.65657 -11.51795 -11.28328 -11.12636 -10.87578 -10.67393 -10.35485 -10.29240 -10.12741 -9.88489 -9.77892 -9.51157 -9.21066 -9.09026 -9.04349 -8.67709 -6.91098 -5.83870 -3.18326 2.23270 2.32663 2.48561 2.93878 3.35203 3.41426 3.43833 3.81093 3.90970 4.10179 4.34507 4.39851 4.43019 4.55466 4.64262 4.75089 4.79540 4.84926 5.04248 5.14288 5.22570 5.24014 5.24355 5.33665 5.34952 5.40067 5.40982 5.44837 5.45781 5.50939 5.72889 5.73153 5.79473 5.83524 5.86945 5.89139 6.18718 6.22699 6.24436 6.48932 6.60933 6.64389 6.75150 6.85376 7.27039 7.31794 7.49404 7.68376 7.82971 7.94966 8.16860 9.07108 9.69932 10.46492 11.30461 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.001736 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.757070 B =16120.774499 C =16346.346822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.617 5.617 5 C 0.118 3.882 6 C -0.124 4.124 7 H 0.119 0.881 8 C 0.524 3.476 9 O -0.538 6.538 10 N -0.718 5.718 11 C 0.153 3.847 12 C -0.154 4.154 13 H 0.103 0.897 14 C -0.162 4.162 15 H 0.102 0.898 16 C 0.183 3.817 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.156 3.844 27 C -0.171 4.171 28 H 0.107 0.893 29 C -0.147 4.147 30 C 0.522 3.478 31 O -0.526 6.526 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.404 0.596 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.024 0.976 46 H 0.254 0.746 47 H 0.048 0.952 48 H 0.027 0.973 49 H 0.112 0.888 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.468 9.570 -22.016 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.352 5.352 5 C -0.006 4.006 6 C -0.146 4.146 7 H 0.137 0.863 8 C 0.308 3.692 9 O -0.415 6.415 10 N -0.368 5.368 11 C 0.030 3.970 12 C -0.174 4.174 13 H 0.121 0.879 14 C -0.182 4.182 15 H 0.120 0.880 16 C 0.057 3.943 17 N -0.318 5.318 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.029 3.971 27 C -0.191 4.191 28 H 0.125 0.875 29 C -0.188 4.188 30 C 0.310 3.690 31 O -0.402 6.402 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.238 0.762 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.042 0.958 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.045 0.955 49 H 0.130 0.870 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.000 10.051 -22.211 27.173 hybrid contribution 0.152 -0.718 0.853 1.125 sum -11.848 9.333 -21.358 26.146 Atomic orbital electron populations 1.22187 0.94581 1.02409 1.03387 1.20957 0.94471 0.93209 0.86334 1.22190 1.01441 0.95684 1.03362 1.48517 1.51149 1.29252 1.06265 1.22007 0.96547 0.86272 0.95727 1.22242 0.97476 0.98386 0.96490 0.86283 1.20017 0.89156 0.78054 0.81925 1.90730 1.40685 1.57286 1.52803 1.46014 1.15404 1.60454 1.14966 1.20925 0.84564 0.97834 0.93633 1.22551 1.02856 0.96925 0.95018 0.87867 1.24186 0.91563 1.02738 0.99732 0.88025 1.21089 1.00757 0.87100 0.85309 1.45155 1.30908 1.18917 1.36782 1.19038 1.25046 0.90620 1.00854 0.90514 1.24901 1.01488 0.96117 0.97769 1.69904 1.39479 1.12614 1.34135 0.86042 0.78886 0.80271 0.80526 1.20347 1.21583 1.21673 1.21715 0.90757 0.97772 0.86860 1.24718 1.04403 0.90140 0.99881 0.87517 1.22383 1.03570 0.94346 0.98457 1.20683 0.79694 0.85004 0.83641 1.90715 1.39524 1.28584 1.81423 0.91399 0.92445 0.90958 0.89315 0.92367 0.91413 0.90929 0.88987 0.89724 0.76152 0.91287 0.91018 0.89197 0.95841 0.93569 0.93358 0.95543 0.86972 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 9.20 37.16 0.34 -0.79 16 2 C 0.15 1.05 3.47 -67.93 -0.24 0.81 16 3 C -0.17 -1.23 9.20 37.16 0.34 -0.89 16 4 N -0.62 -4.91 2.83 -164.77 -0.47 -5.38 16 5 C 0.12 0.82 6.65 -3.07 -0.02 0.80 16 6 C -0.12 -0.82 3.54 -90.14 -0.32 -1.14 16 7 H 0.12 0.54 8.14 -51.92 -0.42 0.11 16 8 C 0.52 5.07 7.06 -10.99 -0.08 4.99 16 9 O -0.54 -7.23 15.53 5.55 0.09 -7.14 16 10 N -0.72 -6.66 5.54 -60.30 -0.33 -7.00 16 11 C 0.15 1.82 5.95 -4.04 -0.02 1.79 16 12 C -0.15 -2.15 5.34 -90.62 -0.48 -2.63 16 13 H 0.10 1.43 8.04 -51.93 -0.42 1.01 16 14 C -0.16 -2.89 6.77 -89.22 -0.60 -3.49 16 15 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 16 C 0.18 4.25 5.70 -2.41 -0.01 4.23 16 17 N -0.59 -14.80 3.38 -166.73 -0.56 -15.37 16 18 C -0.23 -6.22 10.35 -15.06 -0.16 -6.38 16 19 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 20 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 21 N -0.92 -26.38 10.86 55.49 0.60 -25.78 16 22 Si 0.91 21.62 29.56 -169.99 -5.03 16.60 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.16 3.10 7.10 -0.57 0.00 3.09 16 27 C -0.17 -2.81 7.03 -87.38 -0.61 -3.42 16 28 H 0.11 1.61 8.12 -51.93 -0.42 1.18 16 29 C -0.15 -1.05 6.40 -26.75 -0.17 -1.22 16 30 C 0.52 5.11 7.41 -10.86 -0.08 5.03 16 31 O -0.53 -6.94 15.12 5.55 0.08 -6.85 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.66 6.80 -51.93 -0.35 0.31 16 35 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.70 6.77 -51.93 -0.35 0.35 16 39 H 0.09 0.78 7.01 -51.93 -0.36 0.41 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.40 2.87 8.40 -40.82 -0.34 2.52 16 42 H 0.07 0.87 7.94 -51.93 -0.41 0.45 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.09 2.36 6.51 -51.93 -0.34 2.02 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.11 0.63 8.14 -51.92 -0.42 0.20 16 50 H 0.11 0.83 7.89 -51.93 -0.41 0.42 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -33.29 400.13 -10.25 -43.54 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.45 Total: 0.81 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.22 Total: 0.54 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.76 Total: -53.52 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.17 Total: -13.99 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.29 -10.25 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978223682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.161 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds