Wall clock time and date at job start Tue Mar 31 2020 19:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47171 * 2 1 4 4 N 1.46496 * 109.47497 * 120.00132 * 2 1 3 5 5 C 1.46859 * 124.34247 * 119.97343 * 4 2 1 6 6 C 1.54483 * 105.42614 * 197.02163 * 5 4 2 7 7 H 1.09009 * 110.96534 * 92.71720 * 6 5 4 8 8 C 1.50695 * 110.97299 * 216.43927 * 6 5 4 9 9 O 1.21284 * 119.99732 * 356.91595 * 8 6 5 10 10 N 1.34771 * 120.00318 * 176.91257 * 8 6 5 11 11 C 1.46500 * 120.00377 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47381 * 179.97438 * 11 10 8 13 13 H 1.09002 * 115.51385 * 330.41704 * 12 11 10 14 14 C 1.52999 * 117.44362 * 184.99907 * 12 11 10 15 15 H 1.09005 * 119.54029 * 4.12003 * 14 12 11 16 16 C 1.54389 * 118.12463 * 159.21225 * 14 12 11 17 17 N 1.48146 * 104.61525 * 87.18919 * 16 14 12 18 18 C 1.36941 * 127.83291 * 140.41740 * 17 16 14 19 19 H 1.07996 * 119.99569 * 195.57256 * 18 17 16 20 20 C 1.38811 * 120.00139 * 15.57236 * 18 17 16 21 21 N 1.31620 * 119.99914 * 9.09907 * 20 18 17 22 22 Si 1.86804 * 119.99843 * 189.10086 * 20 18 17 23 23 H 1.48495 * 109.46952 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46983 * 120.00062 * 22 20 18 25 25 H 1.48497 * 109.46988 * 239.99705 * 22 20 18 26 26 C 1.48144 * 104.32698 * 320.41599 * 17 16 14 27 27 C 1.52995 * 117.44143 * 115.75890 * 12 11 10 28 28 H 1.09001 * 119.54485 * 355.88641 * 27 12 11 29 29 C 1.54625 * 101.79729 * 334.58016 * 6 5 4 30 30 C 1.34424 * 124.34889 * 299.97823 * 4 2 1 31 31 O 1.21286 * 124.93937 * 359.54646 * 30 4 2 32 32 H 1.09004 * 109.46884 * 59.99770 * 1 2 3 33 33 H 1.08993 * 109.46667 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46678 * 299.99953 * 1 2 3 35 35 H 1.08997 * 109.47090 * 240.00390 * 2 1 3 36 36 H 1.08992 * 109.47378 * 180.02562 * 3 2 1 37 37 H 1.08996 * 109.47222 * 300.00538 * 3 2 1 38 38 H 1.09000 * 109.46992 * 59.99730 * 3 2 1 39 39 H 1.08999 * 110.25689 * 78.04518 * 5 4 2 40 40 H 1.08995 * 110.27727 * 316.01319 * 5 4 2 41 41 H 0.97003 * 120.00119 * 359.97438 * 10 8 6 42 42 H 1.09000 * 109.47154 * 300.00177 * 11 10 8 43 43 H 1.08998 * 109.47157 * 59.99659 * 11 10 8 44 44 H 1.08999 * 110.40643 * 205.97982 * 16 14 12 45 45 H 1.09001 * 110.40231 * 328.40530 * 16 14 12 46 46 H 0.97000 * 119.99715 * 180.02562 * 21 20 18 47 47 H 1.08997 * 110.40864 * 158.36866 * 26 17 16 48 48 H 1.09004 * 110.40721 * 280.68296 * 26 17 16 49 49 H 1.09011 * 110.48616 * 143.49116 * 29 6 5 50 50 H 1.08997 * 110.48600 * 266.12981 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8658 -1.8898 1.1724 6 6 2.7605 -2.4955 2.5896 7 1 1.9668 -3.2412 2.6371 8 6 4.0776 -3.0854 3.0233 9 8 5.0206 -3.0895 2.2607 10 7 4.2076 -3.6084 4.2586 11 6 5.4882 -4.1814 4.6805 12 6 5.3669 -4.7008 6.1144 13 1 4.6510 -4.1743 6.7456 14 6 6.6368 -5.2333 6.7813 15 1 7.5888 -5.1671 6.2544 16 6 6.6755 -5.3012 8.3232 17 7 6.0864 -6.6195 8.6543 18 6 6.4865 -7.4982 9.6254 19 1 6.1412 -8.5213 9.6033 20 6 7.3356 -7.0740 10.6382 21 7 7.6136 -5.7943 10.7711 22 14 8.0840 -8.3192 11.8125 23 1 7.6166 -9.6820 11.4526 24 1 9.5648 -8.2619 11.7170 25 1 7.6650 -8.0035 13.2017 26 6 4.9665 -6.7716 7.6965 27 6 5.5260 -6.2065 6.3347 28 1 5.6505 -6.8652 5.4753 29 6 2.4041 -1.2532 3.4386 30 6 1.7485 -0.3081 2.4562 31 8 1.0775 0.6552 2.7610 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 -0.3632 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6767 1.9563 0.8900 39 1 3.8985 -1.6180 0.9542 40 1 2.4968 -2.5985 0.4310 41 1 3.4535 -3.6047 4.8688 42 1 5.7543 -5.0041 4.0169 43 1 6.2616 -3.4145 4.6364 44 1 7.7037 -5.2436 8.6805 45 1 6.0771 -4.4984 8.7540 46 1 8.2073 -5.4979 11.4786 47 1 4.7053 -7.8235 7.5810 48 1 4.1004 -6.2002 8.0306 49 1 1.7075 -1.5212 4.2331 50 1 3.3058 -0.8049 3.8558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978223682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:40 Heat of formation + Delta-G solvation = -34.809827 kcal Electronic energy + Delta-G solvation = -28460.277498 eV Core-core repulsion = 24488.147392 eV Total energy + Delta-G solvation = -3972.130107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.93582 -40.64771 -39.98390 -37.43687 -36.33484 -35.89762 -34.96299 -32.74519 -31.37381 -29.00959 -28.73131 -28.50032 -28.12606 -26.68609 -24.10241 -23.40481 -22.71839 -21.80744 -20.90795 -20.69852 -19.92917 -18.82281 -18.53935 -17.64606 -17.23438 -16.97740 -16.73046 -16.21333 -16.16380 -15.79174 -15.29047 -15.13428 -14.87878 -14.73431 -14.70389 -14.57140 -14.55250 -14.21427 -13.81220 -13.68646 -13.33933 -13.17194 -13.03095 -12.96326 -12.85649 -12.72979 -12.56896 -12.35799 -12.26087 -12.19916 -12.07580 -11.93158 -11.85092 -11.74717 -11.17179 -10.91693 -10.69834 -10.65406 -10.49067 -10.01546 -9.72403 -8.89568 -7.91781 -5.27549 1.46530 1.47218 1.51568 1.57999 1.58396 1.85469 2.18957 2.47776 2.78434 3.19822 3.27132 3.35299 3.64368 3.73361 3.77662 3.84933 3.89884 4.00710 4.10186 4.18445 4.25135 4.29200 4.30934 4.36807 4.54063 4.59921 4.61822 4.69739 4.71524 4.72986 4.79409 4.83236 4.86902 4.90162 4.95204 4.96633 5.04810 5.22143 5.24871 5.29885 5.37245 5.46301 5.49659 5.55544 5.66197 5.68621 6.12069 6.19114 6.55015 7.02003 7.13594 7.22094 7.69536 8.47491 9.22077 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.001736 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.757070 B =16120.774499 C =16346.346822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 C -0.165 4.165 4 N -0.613 5.613 5 C 0.117 3.883 6 C -0.109 4.109 7 H 0.152 0.848 8 C 0.528 3.472 9 O -0.575 6.575 10 N -0.709 5.709 11 C 0.163 3.837 12 C -0.111 4.111 13 H 0.110 0.890 14 C -0.181 4.181 15 H 0.110 0.890 16 C 0.188 3.812 17 N -0.622 5.622 18 C -0.238 4.238 19 H 0.081 0.919 20 C -0.064 4.064 21 N -0.947 5.947 22 Si 0.978 3.022 23 H -0.264 1.264 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.148 3.852 27 C -0.156 4.156 28 H 0.131 0.869 29 C -0.142 4.142 30 C 0.512 3.488 31 O -0.569 6.569 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.114 0.886 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.417 0.583 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.002 0.998 46 H 0.249 0.751 47 H 0.054 0.946 48 H 0.032 0.968 49 H 0.132 0.868 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.802 8.347 -24.172 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 C -0.223 4.223 4 N -0.346 5.346 5 C -0.006 4.006 6 C -0.130 4.130 7 H 0.169 0.831 8 C 0.314 3.686 9 O -0.455 6.455 10 N -0.361 5.361 11 C 0.039 3.961 12 C -0.130 4.130 13 H 0.128 0.872 14 C -0.202 4.202 15 H 0.128 0.872 16 C 0.063 3.937 17 N -0.346 5.346 18 C -0.367 4.367 19 H 0.099 0.901 20 C -0.257 4.257 21 N -0.596 5.596 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.023 3.977 27 C -0.176 4.176 28 H 0.148 0.852 29 C -0.182 4.182 30 C 0.301 3.699 31 O -0.448 6.448 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.132 0.868 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.255 0.745 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.020 0.980 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.050 0.950 49 H 0.150 0.850 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.370 8.802 -24.400 29.182 hybrid contribution 0.532 -0.303 1.472 1.595 sum -12.837 8.500 -22.928 27.618 Atomic orbital electron populations 1.22124 0.94383 1.02633 1.02770 1.21172 0.94673 0.93021 0.86868 1.22151 1.01100 0.96200 1.02849 1.48649 1.50480 1.29362 1.06156 1.22079 0.95662 0.86190 0.96649 1.22203 0.96437 0.98566 0.95812 0.83071 1.20418 0.89640 0.77224 0.81312 1.90728 1.42194 1.58726 1.53851 1.45870 1.14927 1.60026 1.15289 1.20675 0.85747 0.97812 0.91860 1.22450 0.99505 0.95132 0.95915 0.87208 1.23852 0.93747 1.06341 0.96212 0.87215 1.20812 0.97831 0.86152 0.88936 1.45476 1.32840 1.18974 1.37270 1.19414 1.24634 0.91347 1.01326 0.90145 1.25725 1.02441 0.97827 0.99751 1.70097 1.40314 1.14388 1.34755 0.85020 0.77553 0.78702 0.78093 1.18828 1.21885 1.21894 1.21892 0.89664 0.98636 0.87519 1.24638 1.02641 0.91566 0.98725 0.85173 1.22379 1.03542 0.93854 0.98421 1.21147 0.79297 0.84813 0.84687 1.90696 1.41525 1.30440 1.82167 0.89737 0.91738 0.93821 0.86762 0.92756 0.89548 0.93797 0.90507 0.87360 0.74530 0.91112 0.91499 0.93197 0.98010 0.94186 0.92768 0.94999 0.85038 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.20 71.98 0.66 -1.27 16 2 C 0.14 1.74 3.47 44.99 0.16 1.89 16 3 C -0.17 -2.31 9.20 71.98 0.66 -1.65 16 4 N -0.61 -8.72 2.83 -793.80 -2.25 -10.97 16 5 C 0.12 1.31 6.65 86.82 0.58 1.88 16 6 C -0.11 -1.07 3.54 -10.48 -0.04 -1.11 16 7 H 0.15 0.62 8.14 -2.38 -0.02 0.60 16 8 C 0.53 8.64 7.06 87.66 0.62 9.26 16 9 O -0.58 -14.19 15.53 -3.04 -0.05 -14.24 16 10 N -0.71 -10.74 5.54 -463.08 -2.57 -13.30 16 11 C 0.16 3.37 5.95 86.38 0.51 3.88 16 12 C -0.11 -2.80 5.34 -10.80 -0.06 -2.86 16 13 H 0.11 2.72 8.04 -2.39 -0.02 2.70 16 14 C -0.18 -6.32 6.77 -9.89 -0.07 -6.39 16 15 H 0.11 3.65 8.14 -2.38 -0.02 3.63 16 16 C 0.19 8.98 5.70 86.53 0.49 9.47 16 17 N -0.62 -31.27 3.38 -681.41 -2.30 -33.57 16 18 C -0.24 -13.18 10.35 84.03 0.87 -12.31 16 19 H 0.08 4.26 7.84 -2.91 -0.02 4.23 16 20 C -0.06 -3.60 5.40 84.86 0.46 -3.14 16 21 N -0.95 -56.58 10.86 21.65 0.24 -56.35 16 22 Si 0.98 45.12 29.56 68.60 2.03 47.15 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 C 0.15 5.70 7.10 87.73 0.62 6.33 16 27 C -0.16 -4.72 7.03 -8.70 -0.06 -4.78 16 28 H 0.13 3.41 8.12 -2.39 -0.02 3.39 16 29 C -0.14 -1.70 6.40 30.58 0.20 -1.51 16 30 C 0.51 9.54 7.41 87.90 0.65 10.19 16 31 O -0.57 -15.22 15.12 -3.05 -0.05 -15.26 16 32 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.04 0.79 6.80 -2.39 -0.02 0.78 16 35 H 0.11 0.82 8.07 -2.39 -0.02 0.80 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.04 0.88 6.77 -2.39 -0.02 0.86 16 39 H 0.08 1.16 7.01 -2.39 -0.02 1.14 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.42 4.23 8.40 -92.71 -0.78 3.45 16 42 H 0.07 1.52 7.94 -2.39 -0.02 1.50 16 43 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 2.75 6.51 -2.39 -0.02 2.73 16 45 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 48 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 50 H 0.11 1.41 7.89 -2.39 -0.02 1.39 16 Total: -1.00 -76.06 400.13 1.46 -74.60 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.15 Total: 14.07 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 6.26 Total: 7.88 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -6.88 Total: -114.20 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.09 Total: -29.50 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.06 1.46 -74.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978223682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.786 kcal (2) G-P(sol) polarization free energy of solvation -76.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds