Wall clock time and date at job start Tue Mar 31 2020 19:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47122 * 2 1 4 4 N 1.46495 * 109.47459 * 179.97438 * 3 2 1 5 5 C 1.46767 * 124.35067 * 89.99550 * 4 3 2 6 6 C 1.54472 * 105.47547 * 163.00785 * 5 4 3 7 7 H 1.09006 * 110.96970 * 267.26536 * 6 5 4 8 8 C 1.50698 * 110.97467 * 143.53651 * 6 5 4 9 9 O 1.21280 * 119.99535 * 3.08980 * 8 6 5 10 10 N 1.34775 * 120.00318 * 183.09174 * 8 6 5 11 11 C 1.46496 * 119.99683 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46888 * 179.97438 * 11 10 8 13 13 H 1.08993 * 115.49598 * 29.61996 * 12 11 10 14 14 C 1.53154 * 117.38286 * 244.33327 * 12 11 10 15 15 H 1.09006 * 120.41671 * 3.77767 * 14 12 11 16 16 C 1.54386 * 118.02928 * 160.93080 * 14 12 11 17 17 N 1.48146 * 104.71862 * 87.04357 * 16 14 12 18 18 C 1.36934 * 127.83756 * 140.35768 * 17 16 14 19 19 H 1.07999 * 119.99882 * 195.61312 * 18 17 16 20 20 C 1.38816 * 120.00098 * 15.61148 * 18 17 16 21 21 N 1.31612 * 120.00108 * 9.10877 * 20 18 17 22 22 Si 1.86803 * 119.99782 * 189.10834 * 20 18 17 23 23 H 1.48496 * 109.47148 * 90.00143 * 22 20 18 24 24 H 1.48501 * 109.46707 * 210.00271 * 22 20 18 25 25 H 1.48502 * 109.47337 * 329.99715 * 22 20 18 26 26 C 1.48143 * 104.32403 * 320.35279 * 17 16 14 27 27 C 1.53003 * 117.44160 * 174.99996 * 12 11 10 28 28 H 1.08997 * 120.26671 * 356.16882 * 27 12 11 29 29 C 1.54630 * 101.79936 * 25.39838 * 6 5 4 30 30 C 1.34423 * 124.35142 * 270.02287 * 4 3 2 31 31 O 1.21281 * 124.94001 * 0.37153 * 30 4 3 32 32 H 1.09001 * 109.46948 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47541 * 299.99861 * 1 2 3 34 34 H 1.08993 * 109.47267 * 60.00343 * 1 2 3 35 35 H 1.08995 * 109.47595 * 240.00122 * 2 1 3 36 36 H 1.09002 * 109.47494 * 119.99129 * 2 1 3 37 37 H 1.09005 * 109.47290 * 59.99485 * 3 2 1 38 38 H 1.09005 * 109.46856 * 300.00282 * 3 2 1 39 39 H 1.09002 * 110.23914 * 44.00475 * 5 4 3 40 40 H 1.08999 * 110.32007 * 282.05018 * 5 4 3 41 41 H 0.96996 * 120.00383 * 359.97438 * 10 8 6 42 42 H 1.09006 * 109.47735 * 60.00059 * 11 10 8 43 43 H 1.08997 * 109.47208 * 299.99668 * 11 10 8 44 44 H 1.09003 * 110.40937 * 328.19482 * 16 14 12 45 45 H 1.09006 * 110.40453 * 205.88238 * 16 14 12 46 46 H 0.96998 * 120.00174 * 179.97438 * 21 20 18 47 47 H 1.08994 * 110.40818 * 158.37311 * 26 17 16 48 48 H 1.09000 * 110.40483 * 280.80198 * 26 17 16 49 49 H 1.08998 * 110.48559 * 93.89839 * 29 6 5 50 50 H 1.09004 * 110.48828 * 216.54474 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3336 1.4424 -1.2107 6 6 5.7413 1.8776 -0.7472 7 1 5.8678 2.9560 -0.8437 8 6 6.8121 1.1415 -1.5103 9 8 6.5052 0.3733 -2.3972 10 7 8.1108 1.3367 -1.2073 11 6 9.1516 0.6205 -1.9489 12 6 10.5272 1.0201 -1.4114 13 1 10.5560 1.3016 -0.3588 14 6 11.4686 1.7604 -2.3660 15 1 11.1335 2.0404 -3.3648 16 6 12.6419 2.5567 -1.7554 17 7 13.7375 1.5687 -1.6203 18 6 15.0729 1.7577 -1.8568 19 1 15.7280 0.9059 -1.9652 20 6 15.5848 3.0441 -1.9574 21 7 14.8309 4.0782 -1.6500 22 14 17.3436 3.3075 -2.5290 23 1 17.3677 3.4495 -4.0069 24 1 17.8877 4.5400 -1.9043 25 1 18.1735 2.1425 -2.1300 26 6 13.0605 0.3298 -1.1713 27 6 11.7456 0.2895 -1.9795 28 1 11.6149 -0.5256 -2.6912 29 6 5.7301 1.4528 0.7396 30 6 4.2629 1.4424 1.1107 31 8 3.8336 1.4356 2.2450 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8899 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5137 0.8901 37 1 1.6766 1.9564 0.8900 38 1 1.6765 1.9564 -0.8900 39 1 3.9393 2.1527 -1.9375 40 1 4.3712 0.4427 -1.6434 41 1 8.3563 1.9513 -0.4982 42 1 9.0865 0.8773 -3.0063 43 1 9.0112 -0.4534 -1.8265 44 1 12.3648 2.9529 -0.7784 45 1 12.9399 3.3659 -2.4222 46 1 15.1886 4.9771 -1.7198 47 1 13.6735 -0.5421 -1.3990 48 1 12.8488 0.3782 -0.1032 49 1 6.1598 0.4578 0.8552 50 1 6.2728 2.1768 1.3474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978786080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:44 Heat of formation + Delta-G solvation = -18.975985 kcal Electronic energy + Delta-G solvation = -28217.183135 eV Core-core repulsion = 24245.739635 eV Total energy + Delta-G solvation = -3971.443500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.18392 -39.63754 -38.74394 -36.73189 -35.22735 -35.09425 -33.41592 -31.97167 -30.82193 -28.22195 -27.67592 -27.17921 -26.52790 -24.98847 -23.22504 -22.18974 -21.22094 -20.70510 -19.87822 -19.65317 -19.30478 -17.87303 -17.20341 -16.86741 -16.32968 -16.12571 -15.63535 -15.42107 -14.97860 -14.82439 -14.41319 -14.22968 -14.01954 -13.93391 -13.86158 -13.42097 -13.24322 -13.00023 -12.81184 -12.71315 -12.58211 -12.23795 -11.97052 -11.88313 -11.82113 -11.69793 -11.29094 -11.16068 -11.14304 -10.87217 -10.74405 -10.40590 -10.33091 -10.16091 -9.99214 -9.78339 -9.52172 -9.15719 -9.10253 -9.05303 -8.67983 -6.90886 -5.83804 -3.18120 2.21120 2.32456 2.50488 2.93746 3.35694 3.41223 3.42887 3.81268 3.90936 4.08564 4.35659 4.42633 4.43261 4.52498 4.56081 4.75642 4.82206 4.84184 4.97751 5.05147 5.15046 5.17583 5.24165 5.30094 5.31626 5.34071 5.38116 5.44820 5.49517 5.59757 5.66658 5.70961 5.80683 5.82985 5.85827 5.90694 6.14107 6.19090 6.23109 6.48770 6.61288 6.66311 6.69952 6.86989 7.27736 7.31376 7.48682 7.67847 7.79049 7.95414 8.17057 9.07319 9.70007 10.46723 11.30497 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032100 B = 0.001712 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.058510 B =16352.632707 C =16605.642469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.126 3.874 4 N -0.620 5.620 5 C 0.117 3.883 6 C -0.125 4.125 7 H 0.121 0.879 8 C 0.525 3.475 9 O -0.538 6.538 10 N -0.717 5.717 11 C 0.154 3.846 12 C -0.148 4.148 13 H 0.104 0.896 14 C -0.169 4.169 15 H 0.103 0.897 16 C 0.182 3.818 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.153 3.847 27 C -0.166 4.166 28 H 0.104 0.896 29 C -0.146 4.146 30 C 0.520 3.480 31 O -0.529 6.529 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.405 0.595 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.022 0.978 45 H 0.089 0.911 46 H 0.254 0.746 47 H 0.051 0.949 48 H 0.024 0.976 49 H 0.110 0.890 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.457 -4.537 1.413 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.006 4.006 6 C -0.147 4.147 7 H 0.139 0.861 8 C 0.309 3.691 9 O -0.416 6.416 10 N -0.368 5.368 11 C 0.031 3.969 12 C -0.167 4.167 13 H 0.122 0.878 14 C -0.189 4.189 15 H 0.121 0.879 16 C 0.057 3.943 17 N -0.318 5.318 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.186 4.186 28 H 0.122 0.878 29 C -0.186 4.186 30 C 0.308 3.692 31 O -0.405 6.405 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.240 0.760 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.040 0.960 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.042 0.958 49 H 0.128 0.872 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -25.724 -4.903 1.339 26.221 hybrid contribution 1.062 0.498 -0.114 1.178 sum -24.662 -4.405 1.225 25.082 Atomic orbital electron populations 1.21689 0.94880 1.02163 1.01975 1.21926 0.96364 0.97027 1.02862 1.21472 0.77491 0.97281 1.03287 1.48345 1.06390 1.73429 1.07212 1.21981 0.87766 1.03919 0.86908 1.22252 0.94527 1.02615 0.95278 0.86131 1.20001 0.83311 0.82201 0.83563 1.90725 1.82145 1.36997 1.31692 1.45998 1.05494 1.46457 1.38861 1.20910 0.84302 0.96117 0.95599 1.22536 0.89420 1.05529 0.99191 0.87833 1.24435 0.99597 0.95797 0.99044 0.87921 1.21072 0.83305 0.92110 0.97845 1.45213 1.02909 1.06604 1.77059 1.19014 0.82184 0.92252 1.42149 0.90547 1.24891 0.98244 0.95669 1.01422 1.69889 1.35888 0.97863 1.52576 0.86109 0.83827 0.77374 0.78390 1.21486 1.21636 1.20518 1.21153 0.90025 0.91390 0.94722 1.23883 0.94689 0.96471 1.03598 0.87751 1.22378 0.95656 1.05626 0.94952 1.20771 0.88900 0.75130 0.84423 1.90743 1.78475 1.50243 1.21056 0.92316 0.92466 0.92500 0.91526 0.91529 0.89899 0.90170 0.89634 0.88990 0.76047 0.91183 0.91126 0.95964 0.89272 0.93558 0.93090 0.95790 0.87171 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.15 0.37 -0.40 16 2 C -0.14 -0.96 6.26 -26.73 -0.17 -1.13 16 3 C 0.13 0.86 5.93 -4.04 -0.02 0.83 16 4 N -0.62 -5.02 2.93 -172.39 -0.51 -5.53 16 5 C 0.12 0.83 6.69 -3.12 -0.02 0.81 16 6 C -0.12 -0.85 3.54 -90.14 -0.32 -1.17 16 7 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 8 C 0.52 5.14 7.06 -10.99 -0.08 5.06 16 9 O -0.54 -7.22 15.53 5.56 0.09 -7.14 16 10 N -0.72 -6.79 5.54 -60.30 -0.33 -7.13 16 11 C 0.15 1.81 5.95 -4.04 -0.02 1.78 16 12 C -0.15 -2.05 5.39 -90.54 -0.49 -2.54 16 13 H 0.10 1.42 8.04 -51.93 -0.42 1.00 16 14 C -0.17 -2.98 6.76 -88.98 -0.60 -3.58 16 15 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 16 C 0.18 4.19 5.69 -2.41 -0.01 4.17 16 17 N -0.59 -14.83 3.38 -168.86 -0.57 -15.40 16 18 C -0.23 -6.24 10.35 -15.06 -0.16 -6.40 16 19 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 20 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 21 N -0.92 -26.27 10.86 55.49 0.60 -25.66 16 22 Si 0.91 21.60 29.56 -169.99 -5.03 16.57 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.15 3.09 7.04 -2.41 -0.02 3.07 16 27 C -0.17 -2.76 6.85 -89.05 -0.61 -3.37 16 28 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 29 C -0.15 -1.05 6.40 -26.71 -0.17 -1.22 16 30 C 0.52 5.25 8.02 -10.83 -0.09 5.17 16 31 O -0.53 -7.38 17.59 5.56 0.10 -7.29 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.78 7.00 -51.93 -0.36 0.42 16 41 H 0.40 3.03 8.40 -40.82 -0.34 2.68 16 42 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 2.32 6.51 -51.93 -0.34 1.98 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.11 0.81 7.89 -51.93 -0.41 0.40 16 50 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 406.00 15.07 6.12 6.12 Total: -1.00 -33.63 406.00 -10.62 -44.25 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.58 Total: 0.33 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.50 Total: 0.87 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.81 Total: -53.71 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.18 Total: -14.42 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.63 -10.62 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978786080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.270 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds