Wall clock time and date at job start Tue Mar 31 2020 19:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47122 * 2 1 4 4 N 1.46495 * 109.47459 * 179.97438 * 3 2 1 5 5 C 1.46767 * 124.35067 * 89.99550 * 4 3 2 6 6 C 1.54472 * 105.47547 * 163.00785 * 5 4 3 7 7 H 1.09006 * 110.96970 * 267.26536 * 6 5 4 8 8 C 1.50698 * 110.97467 * 143.53651 * 6 5 4 9 9 O 1.21280 * 119.99535 * 3.08980 * 8 6 5 10 10 N 1.34775 * 120.00318 * 183.09174 * 8 6 5 11 11 C 1.46496 * 119.99683 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46888 * 179.97438 * 11 10 8 13 13 H 1.08993 * 115.49598 * 29.61996 * 12 11 10 14 14 C 1.53154 * 117.38286 * 244.33327 * 12 11 10 15 15 H 1.09006 * 120.41671 * 3.77767 * 14 12 11 16 16 C 1.54386 * 118.02928 * 160.93080 * 14 12 11 17 17 N 1.48146 * 104.71862 * 87.04357 * 16 14 12 18 18 C 1.36934 * 127.83756 * 140.35768 * 17 16 14 19 19 H 1.07999 * 119.99882 * 195.61312 * 18 17 16 20 20 C 1.38816 * 120.00098 * 15.61148 * 18 17 16 21 21 N 1.31612 * 120.00108 * 9.10877 * 20 18 17 22 22 Si 1.86803 * 119.99782 * 189.10834 * 20 18 17 23 23 H 1.48496 * 109.47148 * 90.00143 * 22 20 18 24 24 H 1.48501 * 109.46707 * 210.00271 * 22 20 18 25 25 H 1.48502 * 109.47337 * 329.99715 * 22 20 18 26 26 C 1.48143 * 104.32403 * 320.35279 * 17 16 14 27 27 C 1.53003 * 117.44160 * 174.99996 * 12 11 10 28 28 H 1.08997 * 120.26671 * 356.16882 * 27 12 11 29 29 C 1.54630 * 101.79936 * 25.39838 * 6 5 4 30 30 C 1.34423 * 124.35142 * 270.02287 * 4 3 2 31 31 O 1.21281 * 124.94001 * 0.37153 * 30 4 3 32 32 H 1.09001 * 109.46948 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47541 * 299.99861 * 1 2 3 34 34 H 1.08993 * 109.47267 * 60.00343 * 1 2 3 35 35 H 1.08995 * 109.47595 * 240.00122 * 2 1 3 36 36 H 1.09002 * 109.47494 * 119.99129 * 2 1 3 37 37 H 1.09005 * 109.47290 * 59.99485 * 3 2 1 38 38 H 1.09005 * 109.46856 * 300.00282 * 3 2 1 39 39 H 1.09002 * 110.23914 * 44.00475 * 5 4 3 40 40 H 1.08999 * 110.32007 * 282.05018 * 5 4 3 41 41 H 0.96996 * 120.00383 * 359.97438 * 10 8 6 42 42 H 1.09006 * 109.47735 * 60.00059 * 11 10 8 43 43 H 1.08997 * 109.47208 * 299.99668 * 11 10 8 44 44 H 1.09003 * 110.40937 * 328.19482 * 16 14 12 45 45 H 1.09006 * 110.40453 * 205.88238 * 16 14 12 46 46 H 0.96998 * 120.00174 * 179.97438 * 21 20 18 47 47 H 1.08994 * 110.40818 * 158.37311 * 26 17 16 48 48 H 1.09000 * 110.40483 * 280.80198 * 26 17 16 49 49 H 1.08998 * 110.48559 * 93.89839 * 29 6 5 50 50 H 1.09004 * 110.48828 * 216.54474 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3336 1.4424 -1.2107 6 6 5.7413 1.8776 -0.7472 7 1 5.8678 2.9560 -0.8437 8 6 6.8121 1.1415 -1.5103 9 8 6.5052 0.3733 -2.3972 10 7 8.1108 1.3367 -1.2073 11 6 9.1516 0.6205 -1.9489 12 6 10.5272 1.0201 -1.4114 13 1 10.5560 1.3016 -0.3588 14 6 11.4686 1.7604 -2.3660 15 1 11.1335 2.0404 -3.3648 16 6 12.6419 2.5567 -1.7554 17 7 13.7375 1.5687 -1.6203 18 6 15.0729 1.7577 -1.8568 19 1 15.7280 0.9059 -1.9652 20 6 15.5848 3.0441 -1.9574 21 7 14.8309 4.0782 -1.6500 22 14 17.3436 3.3075 -2.5290 23 1 17.3677 3.4495 -4.0069 24 1 17.8877 4.5400 -1.9043 25 1 18.1735 2.1425 -2.1300 26 6 13.0605 0.3298 -1.1713 27 6 11.7456 0.2895 -1.9795 28 1 11.6149 -0.5256 -2.6912 29 6 5.7301 1.4528 0.7396 30 6 4.2629 1.4424 1.1107 31 8 3.8336 1.4356 2.2450 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8899 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5137 0.8901 37 1 1.6766 1.9564 0.8900 38 1 1.6765 1.9564 -0.8900 39 1 3.9393 2.1527 -1.9375 40 1 4.3712 0.4427 -1.6434 41 1 8.3563 1.9513 -0.4982 42 1 9.0865 0.8773 -3.0063 43 1 9.0112 -0.4534 -1.8265 44 1 12.3648 2.9529 -0.7784 45 1 12.9399 3.3659 -2.4222 46 1 15.1886 4.9771 -1.7198 47 1 13.6735 -0.5421 -1.3990 48 1 12.8488 0.3782 -0.1032 49 1 6.1598 0.4578 0.8552 50 1 6.2728 2.1768 1.3474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978786080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:43 Heat of formation + Delta-G solvation = -40.403083 kcal Electronic energy + Delta-G solvation = -28218.112284 eV Core-core repulsion = 24245.739635 eV Total energy + Delta-G solvation = -3972.372649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.89270 -40.65913 -40.01267 -37.52069 -36.32161 -35.77458 -34.96866 -32.88327 -32.31365 -29.16714 -28.84543 -28.61381 -27.37212 -26.42576 -24.03669 -22.77254 -22.72444 -21.79267 -20.95078 -20.71854 -20.42013 -18.84543 -18.58308 -17.88125 -17.10786 -17.01707 -16.75239 -16.35581 -16.23360 -15.83067 -15.58303 -15.30115 -14.89643 -14.80977 -14.70588 -14.59508 -14.53238 -14.17197 -13.89136 -13.71876 -13.32372 -13.16634 -13.08410 -12.88884 -12.75829 -12.73146 -12.53084 -12.42690 -12.27568 -12.20862 -11.94233 -11.90869 -11.73661 -11.67568 -11.24234 -10.93492 -10.84924 -10.63608 -10.50574 -10.01653 -9.76242 -8.89072 -7.91330 -5.27048 1.46329 1.46910 1.48353 1.56729 1.57063 1.85262 2.17404 2.48586 2.76590 3.18096 3.27464 3.34000 3.63283 3.72417 3.77654 3.86381 3.87805 3.99507 4.03201 4.17556 4.26329 4.31313 4.32685 4.47496 4.50159 4.53904 4.59244 4.62878 4.66588 4.72914 4.78153 4.79958 4.86380 4.95029 4.95777 5.04744 5.13451 5.16136 5.24507 5.31751 5.38194 5.46052 5.49410 5.55146 5.57455 5.69142 6.03821 6.19812 6.54071 7.02826 7.06318 7.20830 7.69711 8.47758 9.22185 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032100 B = 0.001712 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.058510 B =16352.632707 C =16605.642469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.615 5.615 5 C 0.117 3.883 6 C -0.111 4.111 7 H 0.150 0.850 8 C 0.529 3.471 9 O -0.574 6.574 10 N -0.711 5.711 11 C 0.163 3.837 12 C -0.103 4.103 13 H 0.111 0.889 14 C -0.179 4.179 15 H 0.111 0.889 16 C 0.187 3.813 17 N -0.622 5.622 18 C -0.242 4.242 19 H 0.079 0.921 20 C -0.061 4.061 21 N -0.946 5.946 22 Si 0.978 3.022 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.147 3.853 27 C -0.161 4.161 28 H 0.126 0.874 29 C -0.139 4.139 30 C 0.511 3.489 31 O -0.577 6.577 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.417 0.583 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.004 0.996 45 H 0.050 0.950 46 H 0.250 0.750 47 H 0.055 0.945 48 H 0.026 0.974 49 H 0.110 0.890 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.575 -4.969 0.660 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.348 5.348 5 C -0.006 4.006 6 C -0.133 4.133 7 H 0.167 0.833 8 C 0.315 3.685 9 O -0.454 6.454 10 N -0.363 5.363 11 C 0.039 3.961 12 C -0.122 4.122 13 H 0.129 0.871 14 C -0.199 4.199 15 H 0.129 0.871 16 C 0.062 3.938 17 N -0.346 5.346 18 C -0.371 4.371 19 H 0.096 0.904 20 C -0.255 4.255 21 N -0.593 5.593 22 Si 0.806 3.194 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.193 1.193 26 C 0.022 3.978 27 C -0.182 4.182 28 H 0.144 0.856 29 C -0.179 4.179 30 C 0.299 3.701 31 O -0.457 6.457 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.254 0.746 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.022 0.978 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.044 0.956 49 H 0.128 0.872 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.859 -5.356 0.576 27.394 hybrid contribution 1.372 0.575 0.132 1.493 sum -25.487 -4.780 0.708 25.942 Atomic orbital electron populations 1.21669 0.93589 1.02488 1.02620 1.21869 0.97489 0.96762 1.01628 1.21623 0.76933 0.97411 1.04057 1.48481 1.07009 1.72107 1.07166 1.22055 0.87935 1.03914 0.86665 1.22217 0.93139 1.03746 0.94164 0.83251 1.20370 0.83551 0.81546 0.83036 1.90723 1.82639 1.38574 1.33424 1.45894 1.05112 1.46388 1.38871 1.20702 0.83333 0.96635 0.95446 1.22452 0.89533 1.01486 0.98727 0.87082 1.24118 1.00045 0.95445 1.00290 0.87058 1.20827 0.84969 0.91743 0.96284 1.45546 1.02802 1.08602 1.77661 1.19379 0.83741 0.92492 1.41462 0.90351 1.25696 1.02121 0.95502 1.02150 1.70077 1.37421 0.97885 1.53966 0.85095 0.79473 0.77211 0.77650 1.21287 1.22008 1.19293 1.21303 0.91548 0.89669 0.95266 1.23813 0.94444 0.96224 1.03676 0.85631 1.22372 0.93822 1.06273 0.95420 1.21267 0.90267 0.74438 0.84092 1.90714 1.79461 1.52627 1.22886 0.92185 0.92605 0.91043 0.91419 0.94012 0.90958 0.87503 0.87368 0.90316 0.74616 0.91609 0.90479 0.97837 0.93123 0.94134 0.92682 0.95577 0.87203 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.14 -1.78 6.26 30.59 0.19 -1.59 16 3 C 0.12 1.50 5.93 86.38 0.51 2.01 16 4 N -0.62 -9.06 2.93 -817.90 -2.40 -11.45 16 5 C 0.12 1.36 6.69 86.83 0.58 1.94 16 6 C -0.11 -1.17 3.54 -10.49 -0.04 -1.20 16 7 H 0.15 0.80 8.14 -2.38 -0.02 0.78 16 8 C 0.53 8.83 7.06 87.66 0.62 9.45 16 9 O -0.57 -14.10 15.53 -3.03 -0.05 -14.15 16 10 N -0.71 -11.15 5.54 -463.07 -2.57 -13.72 16 11 C 0.16 3.30 5.95 86.38 0.51 3.81 16 12 C -0.10 -2.58 5.39 -10.74 -0.06 -2.64 16 13 H 0.11 2.71 8.04 -2.39 -0.02 2.69 16 14 C -0.18 -6.11 6.76 -9.73 -0.07 -6.17 16 15 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 16 C 0.19 8.77 5.69 86.53 0.49 9.26 16 17 N -0.62 -31.36 3.38 -688.15 -2.33 -33.68 16 18 C -0.24 -13.42 10.35 84.03 0.87 -12.55 16 19 H 0.08 4.18 7.84 -2.91 -0.02 4.15 16 20 C -0.06 -3.41 5.40 84.86 0.46 -2.95 16 21 N -0.95 -55.81 10.86 21.65 0.24 -55.58 16 22 Si 0.98 44.93 29.56 68.60 2.03 46.96 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.15 5.81 7.04 86.54 0.61 6.41 16 27 C -0.16 -5.02 6.85 -9.78 -0.07 -5.09 16 28 H 0.13 3.43 8.14 -2.39 -0.02 3.41 16 29 C -0.14 -1.69 6.40 30.61 0.20 -1.49 16 30 C 0.51 9.83 8.02 87.92 0.71 10.54 16 31 O -0.58 -16.25 17.59 -3.03 -0.05 -16.31 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 1.07 7.93 -2.38 -0.02 1.05 16 38 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.19 7.00 -2.39 -0.02 1.18 16 41 H 0.42 4.72 8.40 -92.71 -0.78 3.94 16 42 H 0.07 1.47 7.95 -2.38 -0.02 1.45 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.05 2.74 6.51 -2.38 -0.02 2.72 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.11 1.39 7.89 -2.39 -0.02 1.37 16 50 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.82 406.00 1.26 -74.57 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.15 Total: 14.25 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.23 Total: 9.12 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -7.06 Total: -114.43 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.10 Total: -30.46 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -75.82 1.26 -74.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978786080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.165 kcal (2) G-P(sol) polarization free energy of solvation -75.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds