Wall clock time and date at job start Tue Mar 31 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47180 * 2 1 4 4 H 1.09005 * 109.47382 * 54.99810 * 3 2 1 5 5 C 1.52994 * 109.47136 * 294.99904 * 3 2 1 6 6 C 1.50703 * 109.47463 * 174.99948 * 3 2 1 7 7 C 1.41259 * 126.70337 * 84.70779 * 6 3 2 8 8 C 1.36827 * 103.84901 * 180.26406 * 7 6 3 9 9 C 1.47509 * 126.94519 * 180.02562 * 8 7 6 10 10 O 1.21584 * 120.00339 * 7.05445 * 9 8 7 11 11 N 1.34779 * 119.99591 * 187.05801 * 9 8 7 12 12 C 1.46921 * 120.63516 * 6.71624 * 11 9 8 13 13 C 1.53624 * 108.54282 * 126.37114 * 12 11 9 14 14 C 1.53032 * 109.24201 * 54.85886 * 13 12 11 15 15 N 1.46503 * 109.44935 * 178.49679 * 14 13 12 16 16 C 1.46497 * 119.99881 * 60.06013 * 15 14 13 17 17 C 1.36931 * 120.00097 * 240.06290 * 15 14 13 18 18 H 1.07998 * 120.00322 * 22.01721 * 17 15 14 19 19 C 1.38815 * 120.00154 * 202.02628 * 17 15 14 20 20 N 1.31611 * 119.99937 * 11.40980 * 19 17 15 21 21 Si 1.86804 * 119.99982 * 191.41510 * 19 17 15 22 22 H 1.48499 * 109.46981 * 89.99715 * 21 19 17 23 23 H 1.48499 * 109.46820 * 209.99381 * 21 19 17 24 24 H 1.48494 * 109.47180 * 329.99514 * 21 19 17 25 25 C 1.53045 * 109.53976 * 298.51056 * 14 13 12 26 26 C 1.46935 * 120.62626 * 187.00171 * 11 9 8 27 27 O 1.34642 * 106.10978 * 0.02562 * 8 7 6 28 28 N 1.20893 * 111.46705 * 359.97438 * 27 8 7 29 29 H 1.08999 * 109.47004 * 59.99855 * 1 2 3 30 30 H 1.08995 * 109.46965 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46765 * 300.00037 * 1 2 3 32 32 H 1.08999 * 109.47300 * 240.00108 * 2 1 3 33 33 H 1.09006 * 109.47737 * 119.99698 * 2 1 3 34 34 H 1.08998 * 109.47174 * 59.99989 * 5 3 2 35 35 H 1.09005 * 109.47343 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47740 * 300.00252 * 5 3 2 37 37 H 1.08006 * 128.08085 * 0.23087 * 7 6 3 38 38 H 1.09006 * 109.58898 * 246.20466 * 12 11 9 39 39 H 1.09000 * 109.58650 * 6.63116 * 12 11 9 40 40 H 1.09001 * 109.63509 * 294.86430 * 13 12 11 41 41 H 1.09007 * 109.43042 * 174.72916 * 13 12 11 42 42 H 1.09004 * 109.46326 * 58.53014 * 14 13 12 43 43 H 1.09000 * 109.47238 * 85.94531 * 16 15 14 44 44 H 1.09008 * 109.47204 * 205.94182 * 16 15 14 45 45 H 1.09004 * 109.47219 * 325.94174 * 16 15 14 46 46 H 0.97005 * 120.00352 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.49180 * 301.41191 * 25 14 13 48 48 H 1.08994 * 109.52442 * 181.33512 * 25 14 13 49 49 H 1.08996 * 109.58863 * 353.36756 * 26 11 9 50 50 H 1.08996 * 109.58495 * 113.65276 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4444 0.1238 7 6 4.4759 1.3083 -0.9272 8 6 5.6890 1.3681 -0.2971 9 6 7.0202 1.2777 -0.9261 10 8 7.1204 1.2635 -2.1377 11 7 8.1254 1.2108 -0.1576 12 6 8.0158 1.0790 1.3015 13 6 8.8432 -0.1368 1.7457 14 6 10.2777 0.0155 1.2348 15 7 11.0799 -1.1242 1.6863 16 6 10.7069 -2.4848 1.2915 17 6 12.1783 -0.9177 2.4774 18 1 12.2641 -0.0100 3.0562 19 6 13.1818 -1.8752 2.5355 20 7 13.1943 -2.8685 1.6721 21 14 14.5143 -1.7538 3.8390 22 1 14.0849 -2.4889 5.0558 23 1 15.7713 -2.3492 3.3188 24 1 14.7460 -0.3269 4.1787 25 6 10.2740 0.0622 -0.2949 26 6 9.4628 1.2746 -0.7628 27 8 5.4221 1.5262 1.0131 28 7 4.2317 1.5656 1.2205 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5490 2.1252 -1.3969 35 1 1.9982 3.1544 -1.3071 36 1 2.0698 1.5875 -2.1492 37 1 4.2786 1.1851 -1.9819 38 1 8.3998 1.9801 1.7797 39 1 6.9716 0.9327 1.5778 40 1 8.4057 -1.0471 1.3358 41 1 8.8488 -0.1935 2.8343 42 1 10.7062 0.9386 1.6252 43 1 11.1448 -2.7141 0.3200 44 1 11.0772 -3.1928 2.0330 45 1 9.6214 -2.5599 1.2276 46 1 13.8953 -3.5377 1.7129 47 1 9.8230 -0.8501 -0.6856 48 1 11.2977 0.1468 -0.6593 49 1 9.3737 1.2574 -1.8490 50 1 9.9613 2.1925 -0.4515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985693939.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:44 Heat of formation + Delta-G solvation = 47.781795 kcal Electronic energy + Delta-G solvation = -29611.018952 eV Core-core repulsion = 25642.470286 eV Total energy + Delta-G solvation = -3968.548665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -45.21976 -40.06330 -37.69645 -37.44047 -35.19648 -33.48626 -32.69247 -31.90845 -30.64622 -29.87255 -29.72781 -26.02246 -25.72851 -25.54612 -23.83294 -23.21163 -22.81642 -21.83147 -21.09369 -19.94480 -18.86172 -17.94623 -17.55716 -16.81696 -16.56209 -16.20489 -15.38848 -15.07423 -15.05391 -14.91181 -14.21562 -14.13686 -13.89587 -13.77301 -13.49691 -13.42592 -13.14211 -13.07767 -12.56304 -12.36405 -12.31804 -12.20814 -11.85477 -11.66364 -11.60410 -11.49685 -11.35064 -11.04670 -10.98882 -10.87613 -10.80843 -10.40297 -10.30520 -10.28939 -10.21677 -10.07759 -9.88527 -9.85542 -9.61716 -8.65760 -8.50496 -6.77124 -5.74202 -3.18229 0.65764 1.83323 2.43240 2.86143 3.07970 3.37565 3.43883 3.45148 3.66019 4.09762 4.45810 4.47283 4.51516 4.67648 4.72078 4.85813 5.01134 5.04456 5.11799 5.16246 5.25686 5.27152 5.31978 5.40344 5.46490 5.46927 5.54627 5.56776 5.62361 5.64850 5.71792 5.74536 5.86203 5.88847 5.92801 6.01857 6.12325 6.21159 6.31752 6.49653 6.54063 6.81641 6.95463 6.98117 7.24023 7.42050 7.70356 7.77985 7.81146 7.99834 8.40489 9.23351 9.86662 10.35829 11.31870 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022412 B = 0.002339 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.026117 B =11965.644322 C =12434.200297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.013 4.013 4 H 0.090 0.910 5 C -0.148 4.148 6 C 0.020 3.980 7 C -0.152 4.152 8 C -0.073 4.073 9 C 0.600 3.400 10 O -0.522 6.522 11 N -0.589 5.589 12 C 0.099 3.901 13 C -0.146 4.146 14 C 0.178 3.822 15 N -0.596 5.596 16 C 0.162 3.838 17 C -0.253 4.253 18 H 0.069 0.931 19 C -0.001 4.001 20 N -0.908 5.908 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.280 1.280 25 C -0.145 4.145 26 C 0.114 3.886 27 O 0.117 5.883 28 N -0.349 5.349 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.181 0.819 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.015 0.985 44 H 0.060 0.940 45 H -0.007 1.007 46 H 0.252 0.748 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.601 9.297 -4.854 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.205 4.205 6 C -0.139 4.139 7 C -0.174 4.174 8 C -0.139 4.139 9 C 0.385 3.615 10 O -0.399 6.399 11 N -0.321 5.321 12 C -0.024 4.024 13 C -0.186 4.186 14 C 0.069 3.931 15 N -0.317 5.317 16 C 0.017 3.983 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.554 5.554 21 Si 0.736 3.264 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C -0.185 4.185 26 C -0.008 4.008 27 O 0.047 5.953 28 N -0.051 5.051 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.198 0.802 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.033 0.967 44 H 0.079 0.921 45 H 0.011 0.989 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.682 9.283 -4.210 24.867 hybrid contribution 0.885 -0.226 -0.068 0.916 sum -21.797 9.058 -4.279 23.989 Atomic orbital electron populations 1.21816 0.94982 1.02065 1.02092 1.21576 0.96326 0.94731 1.02898 1.19612 0.85366 0.97956 1.00255 0.89200 1.21900 1.02025 1.00652 0.95962 1.23574 0.98765 1.03139 0.88380 1.22774 0.89461 1.03143 1.02049 1.24295 0.97308 1.08057 0.84229 1.16669 0.81110 0.77813 0.85945 1.90843 1.85006 1.51533 1.12482 1.48126 1.06016 1.69700 1.08250 1.22331 1.01818 1.00035 0.78250 1.22545 0.97883 0.96433 1.01733 1.20305 0.89645 0.92246 0.90874 1.43963 1.29256 1.00455 1.58015 1.20776 0.91920 0.86102 0.99454 1.19253 0.96128 1.04914 1.17928 0.91341 1.25014 0.97595 0.98761 0.98481 1.70073 1.34404 1.15290 1.35606 0.86237 0.81311 0.77592 0.81280 1.21549 1.21799 1.20521 1.22505 0.99906 0.96529 0.99592 1.21850 0.80189 0.99583 0.99159 1.85145 1.18924 1.66522 1.24681 1.73714 0.89880 1.17167 1.24385 0.92190 0.92366 0.92561 0.91298 0.91584 0.91192 0.92181 0.91864 0.80205 0.90556 0.89069 0.91853 0.90414 0.91737 0.96692 0.92100 0.98887 0.93754 0.92032 0.90287 0.89272 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.67 37.16 0.36 -0.47 16 2 C -0.12 -0.83 5.38 -26.73 -0.14 -0.97 16 3 C -0.01 -0.10 2.85 -91.77 -0.26 -0.36 16 4 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.15 -0.88 8.57 37.15 0.32 -0.57 16 6 C 0.02 0.21 6.20 -82.17 -0.51 -0.30 16 7 C -0.15 -1.68 10.14 -38.95 -0.39 -2.08 16 8 C -0.07 -0.94 6.90 -36.32 -0.25 -1.19 16 9 C 0.60 8.79 7.68 -12.48 -0.10 8.70 16 10 O -0.52 -8.81 16.35 5.29 0.09 -8.72 16 11 N -0.59 -8.38 2.97 -173.74 -0.52 -8.89 16 12 C 0.10 1.31 6.18 -3.49 -0.02 1.28 16 13 C -0.15 -2.36 5.31 -26.39 -0.14 -2.50 16 14 C 0.18 3.39 2.55 -67.89 -0.17 3.22 16 15 N -0.60 -14.36 2.81 -173.43 -0.49 -14.85 16 16 C 0.16 3.95 8.11 59.85 0.49 4.44 16 17 C -0.25 -6.72 9.61 -15.06 -0.14 -6.87 16 18 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 19 C 0.00 -0.01 5.09 -17.43 -0.09 -0.10 16 20 N -0.91 -26.17 10.61 55.49 0.59 -25.58 16 21 Si 0.91 21.56 29.57 -169.99 -5.03 16.53 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.15 -2.54 5.34 -26.61 -0.14 -2.68 16 26 C 0.11 1.65 6.44 -3.71 -0.02 1.63 16 27 O 0.12 1.50 7.93 15.55 0.12 1.62 16 28 N -0.35 -4.39 12.04 33.52 0.40 -3.99 16 29 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.32 6.56 -51.93 -0.34 -0.02 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.36 7.49 -51.93 -0.39 -0.03 16 37 H 0.18 1.68 7.66 -52.48 -0.40 1.28 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.15 4.25 -52.63 -0.22 0.92 16 40 H 0.06 1.09 6.75 -51.93 -0.35 0.74 16 41 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 42 H 0.06 1.23 7.86 -51.93 -0.41 0.82 16 43 H 0.01 0.39 7.87 -51.93 -0.41 -0.02 16 44 H 0.06 1.63 6.58 -51.92 -0.34 1.29 16 45 H -0.01 -0.16 6.47 -51.93 -0.34 -0.49 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16 48 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 50 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -30.51 389.93 -8.26 -38.76 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.08 Total: -1.93 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.23 Total: 1.17 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.01 Total: -53.31 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.21 Total: -7.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.51 -8.26 -38.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985693939.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.547 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds