Wall clock time and date at job start Tue Mar 31 2020 18:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47180 * 2 1 4 4 H 1.09005 * 109.47382 * 54.99810 * 3 2 1 5 5 C 1.52994 * 109.47136 * 294.99904 * 3 2 1 6 6 C 1.50703 * 109.47463 * 174.99948 * 3 2 1 7 7 C 1.41259 * 126.70337 * 84.70779 * 6 3 2 8 8 C 1.36827 * 103.84901 * 180.26406 * 7 6 3 9 9 C 1.47509 * 126.94519 * 180.02562 * 8 7 6 10 10 O 1.21584 * 120.00339 * 7.05445 * 9 8 7 11 11 N 1.34779 * 119.99591 * 187.05801 * 9 8 7 12 12 C 1.46921 * 120.63516 * 6.71624 * 11 9 8 13 13 C 1.53624 * 108.54282 * 126.37114 * 12 11 9 14 14 C 1.53032 * 109.24201 * 54.85886 * 13 12 11 15 15 N 1.46503 * 109.44935 * 178.49679 * 14 13 12 16 16 C 1.46497 * 119.99881 * 60.06013 * 15 14 13 17 17 C 1.36931 * 120.00097 * 240.06290 * 15 14 13 18 18 H 1.07998 * 120.00322 * 22.01721 * 17 15 14 19 19 C 1.38815 * 120.00154 * 202.02628 * 17 15 14 20 20 N 1.31611 * 119.99937 * 11.40980 * 19 17 15 21 21 Si 1.86804 * 119.99982 * 191.41510 * 19 17 15 22 22 H 1.48499 * 109.46981 * 89.99715 * 21 19 17 23 23 H 1.48499 * 109.46820 * 209.99381 * 21 19 17 24 24 H 1.48494 * 109.47180 * 329.99514 * 21 19 17 25 25 C 1.53045 * 109.53976 * 298.51056 * 14 13 12 26 26 C 1.46935 * 120.62626 * 187.00171 * 11 9 8 27 27 O 1.34642 * 106.10978 * 0.02562 * 8 7 6 28 28 N 1.20893 * 111.46705 * 359.97438 * 27 8 7 29 29 H 1.08999 * 109.47004 * 59.99855 * 1 2 3 30 30 H 1.08995 * 109.46965 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46765 * 300.00037 * 1 2 3 32 32 H 1.08999 * 109.47300 * 240.00108 * 2 1 3 33 33 H 1.09006 * 109.47737 * 119.99698 * 2 1 3 34 34 H 1.08998 * 109.47174 * 59.99989 * 5 3 2 35 35 H 1.09005 * 109.47343 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47740 * 300.00252 * 5 3 2 37 37 H 1.08006 * 128.08085 * 0.23087 * 7 6 3 38 38 H 1.09006 * 109.58898 * 246.20466 * 12 11 9 39 39 H 1.09000 * 109.58650 * 6.63116 * 12 11 9 40 40 H 1.09001 * 109.63509 * 294.86430 * 13 12 11 41 41 H 1.09007 * 109.43042 * 174.72916 * 13 12 11 42 42 H 1.09004 * 109.46326 * 58.53014 * 14 13 12 43 43 H 1.09000 * 109.47238 * 85.94531 * 16 15 14 44 44 H 1.09008 * 109.47204 * 205.94182 * 16 15 14 45 45 H 1.09004 * 109.47219 * 325.94174 * 16 15 14 46 46 H 0.97005 * 120.00352 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.49180 * 301.41191 * 25 14 13 48 48 H 1.08994 * 109.52442 * 181.33512 * 25 14 13 49 49 H 1.08996 * 109.58863 * 353.36756 * 26 11 9 50 50 H 1.08996 * 109.58495 * 113.65276 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4444 0.1238 7 6 4.4759 1.3083 -0.9272 8 6 5.6890 1.3681 -0.2971 9 6 7.0202 1.2777 -0.9261 10 8 7.1204 1.2635 -2.1377 11 7 8.1254 1.2108 -0.1576 12 6 8.0158 1.0790 1.3015 13 6 8.8432 -0.1368 1.7457 14 6 10.2777 0.0155 1.2348 15 7 11.0799 -1.1242 1.6863 16 6 10.7069 -2.4848 1.2915 17 6 12.1783 -0.9177 2.4774 18 1 12.2641 -0.0100 3.0562 19 6 13.1818 -1.8752 2.5355 20 7 13.1943 -2.8685 1.6721 21 14 14.5143 -1.7538 3.8390 22 1 14.0849 -2.4889 5.0558 23 1 15.7713 -2.3492 3.3188 24 1 14.7460 -0.3269 4.1787 25 6 10.2740 0.0622 -0.2949 26 6 9.4628 1.2746 -0.7628 27 8 5.4221 1.5262 1.0131 28 7 4.2317 1.5656 1.2205 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5490 2.1252 -1.3969 35 1 1.9982 3.1544 -1.3071 36 1 2.0698 1.5875 -2.1492 37 1 4.2786 1.1851 -1.9819 38 1 8.3998 1.9801 1.7797 39 1 6.9716 0.9327 1.5778 40 1 8.4057 -1.0471 1.3358 41 1 8.8488 -0.1935 2.8343 42 1 10.7062 0.9386 1.6252 43 1 11.1448 -2.7141 0.3200 44 1 11.0772 -3.1928 2.0330 45 1 9.6214 -2.5599 1.2276 46 1 13.8953 -3.5377 1.7129 47 1 9.8230 -0.8501 -0.6856 48 1 11.2977 0.1468 -0.6593 49 1 9.3737 1.2574 -1.8490 50 1 9.9613 2.1925 -0.4515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985693939.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:43 Heat of formation + Delta-G solvation = 31.498376 kcal Electronic energy + Delta-G solvation = -29611.725054 eV Core-core repulsion = 25642.470286 eV Total energy + Delta-G solvation = -3969.254767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -46.13660 -41.27307 -39.07957 -38.12925 -36.81865 -34.32315 -34.10586 -33.24180 -31.86286 -31.44190 -30.39103 -28.03684 -26.92655 -26.32419 -25.11699 -24.25303 -23.99888 -23.17911 -22.00061 -21.03367 -20.08875 -18.89956 -18.80796 -18.58520 -17.69973 -17.26508 -16.93704 -16.27119 -15.92474 -15.74883 -15.70886 -15.18153 -15.10854 -14.97980 -14.73452 -14.62398 -14.53212 -13.99513 -13.84674 -13.63356 -13.17542 -13.09994 -13.00325 -12.87153 -12.79707 -12.64518 -12.50058 -12.34682 -12.21341 -12.17963 -12.05324 -11.93233 -11.83149 -11.66194 -11.57911 -11.45531 -11.20681 -11.06254 -10.83374 -10.57842 -9.83403 -8.76305 -7.81437 -5.26959 -0.33432 0.97234 1.39008 1.48631 1.49636 1.58097 1.76531 2.02059 2.52510 2.89565 3.16227 3.33634 3.59177 3.65808 3.84298 3.90719 3.98021 4.05291 4.07795 4.11914 4.16403 4.30196 4.36322 4.44032 4.53716 4.56825 4.61896 4.70033 4.74638 4.80045 4.83874 4.86761 4.92534 4.95599 5.03509 5.07937 5.08905 5.13251 5.18944 5.23175 5.33298 5.38852 5.46574 5.49074 5.56343 5.65232 5.72546 6.08903 6.36566 6.68233 7.02875 7.17444 7.90171 8.34920 9.23569 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022412 B = 0.002339 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.026117 B =11965.644322 C =12434.200297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.013 4.013 4 H 0.092 0.908 5 C -0.146 4.146 6 C 0.026 3.974 7 C -0.141 4.141 8 C -0.090 4.090 9 C 0.603 3.397 10 O -0.547 6.547 11 N -0.591 5.591 12 C 0.108 3.892 13 C -0.134 4.134 14 C 0.172 3.828 15 N -0.611 5.611 16 C 0.180 3.820 17 C -0.255 4.255 18 H 0.077 0.923 19 C -0.059 4.059 20 N -0.942 5.942 21 Si 0.969 3.031 22 H -0.288 1.288 23 H -0.299 1.299 24 H -0.266 1.266 25 C -0.133 4.133 26 C 0.124 3.876 27 O 0.110 5.890 28 N -0.366 5.366 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.197 0.803 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.070 0.930 43 H -0.012 1.012 44 H 0.031 0.969 45 H 0.018 0.982 46 H 0.246 0.754 47 H 0.042 0.958 48 H 0.061 0.939 49 H 0.089 0.911 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.644 11.116 -4.605 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.032 4.032 4 H 0.110 0.890 5 C -0.203 4.203 6 C -0.132 4.132 7 C -0.163 4.163 8 C -0.155 4.155 9 C 0.389 3.611 10 O -0.426 6.426 11 N -0.322 5.322 12 C -0.014 4.014 13 C -0.174 4.174 14 C 0.065 3.935 15 N -0.333 5.333 16 C 0.035 3.965 17 C -0.385 4.385 18 H 0.094 0.906 19 C -0.253 4.253 20 N -0.590 5.590 21 Si 0.798 3.202 22 H -0.215 1.215 23 H -0.226 1.226 24 H -0.190 1.190 25 C -0.174 4.174 26 C 0.002 3.998 27 O 0.042 5.958 28 N -0.070 5.070 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.215 0.785 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.007 0.993 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.107 0.893 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.745 11.143 -3.949 27.424 hybrid contribution 1.413 -0.772 -0.163 1.618 sum -23.333 10.371 -4.111 25.863 Atomic orbital electron populations 1.21802 0.93534 1.02491 1.02829 1.21559 0.97558 0.94065 1.02176 1.19777 0.83372 0.98600 1.01434 0.88987 1.21913 1.03269 1.00240 0.94892 1.24058 1.00058 1.01516 0.87568 1.23074 0.88869 1.01442 1.02922 1.24070 0.96929 1.09755 0.84736 1.16788 0.81618 0.77053 0.85627 1.90827 1.85520 1.52734 1.13552 1.48154 1.05850 1.69590 1.08614 1.22315 1.02011 0.99409 0.77697 1.22356 0.96062 0.97410 1.01594 1.20548 0.90556 0.90627 0.91739 1.44198 1.29366 1.01532 1.58221 1.20442 0.92897 0.86144 0.96993 1.19628 0.96376 1.04749 1.17750 0.90564 1.25781 1.00040 0.98907 1.00573 1.70245 1.35133 1.16166 1.37447 0.85229 0.78313 0.78017 0.78663 1.21532 1.22624 1.19041 1.22288 0.99392 0.97345 0.98334 1.21721 0.80126 0.98787 0.99165 1.85101 1.19155 1.67103 1.24478 1.73708 0.89945 1.18088 1.25265 0.90927 0.92149 0.92348 0.91223 0.93141 0.89389 0.92419 0.91474 0.78543 0.88297 0.87958 0.93162 0.90333 0.91208 0.99328 0.94996 0.96413 0.94475 0.93904 0.92058 0.89305 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 71.98 0.70 -0.59 16 2 C -0.12 -1.42 5.38 30.59 0.16 -1.26 16 3 C -0.01 -0.17 2.85 -11.54 -0.03 -0.20 16 4 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 5 C -0.15 -1.34 8.57 71.98 0.62 -0.73 16 6 C 0.03 0.51 6.20 43.56 0.27 0.78 16 7 C -0.14 -2.86 10.14 22.68 0.23 -2.63 16 8 C -0.09 -2.17 6.90 24.39 0.17 -2.00 16 9 C 0.60 16.84 7.68 86.69 0.67 17.51 16 10 O -0.55 -17.91 16.35 -3.98 -0.07 -17.97 16 11 N -0.59 -15.83 2.97 -821.85 -2.44 -18.27 16 12 C 0.11 2.64 6.18 86.51 0.53 3.17 16 13 C -0.13 -4.18 5.31 30.81 0.16 -4.01 16 14 C 0.17 6.45 2.55 45.02 0.11 6.57 16 15 N -0.61 -29.70 2.81 -702.62 -1.98 -31.68 16 16 C 0.18 9.04 8.11 127.77 1.04 10.07 16 17 C -0.25 -13.57 9.61 84.04 0.81 -12.77 16 18 H 0.08 3.87 7.81 -2.91 -0.02 3.85 16 19 C -0.06 -3.25 5.09 84.86 0.43 -2.82 16 20 N -0.94 -55.88 10.61 21.65 0.23 -55.65 16 21 Si 0.97 44.69 29.57 68.60 2.03 46.72 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 C -0.13 -4.66 5.34 30.67 0.16 -4.50 16 26 C 0.12 3.42 6.44 86.36 0.56 3.98 16 27 O 0.11 2.63 7.93 65.82 0.52 3.15 16 28 N -0.37 -8.65 12.04 -48.86 -0.59 -9.24 16 29 H 0.07 0.45 6.56 -2.39 -0.02 0.43 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.77 8.14 -2.38 -0.02 0.76 16 34 H 0.09 0.51 6.56 -2.39 -0.02 0.50 16 35 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.07 0.58 7.49 -2.39 -0.02 0.56 16 37 H 0.20 3.22 7.66 -2.91 -0.02 3.19 16 38 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.10 2.37 4.25 -13.52 -0.06 2.31 16 40 H 0.05 1.69 6.75 -2.39 -0.02 1.68 16 41 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 42 H 0.07 2.54 7.86 -2.38 -0.02 2.53 16 43 H -0.01 -0.64 7.87 -2.39 -0.02 -0.65 16 44 H 0.03 1.75 6.58 -2.38 -0.02 1.74 16 45 H 0.02 0.78 6.47 -2.39 -0.02 0.76 16 46 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 47 H 0.04 1.64 7.72 -2.39 -0.02 1.62 16 48 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.09 2.52 7.00 -2.39 -0.02 2.50 16 50 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -66.42 389.93 5.18 -61.24 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.88 Total: 11.11 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 6.59 Total: 10.58 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -4.77 Total: -114.84 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.46 Total: -14.82 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.42 5.18 -61.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985693939.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.738 kcal (2) G-P(sol) polarization free energy of solvation -66.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds