Wall clock time and date at job start Tue Mar 31 2020 18:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 H 1.08996 * 109.46929 * 304.99025 * 3 2 1 5 5 C 1.52997 * 109.47317 * 64.99921 * 3 2 1 6 6 C 1.50706 * 109.46573 * 184.99846 * 3 2 1 7 7 C 1.41261 * 126.70287 * 274.99570 * 6 3 2 8 8 C 1.36832 * 103.84327 * 180.02562 * 7 6 3 9 9 C 1.47506 * 126.93977 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00428 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99866 * 179.97438 * 9 8 7 12 12 C 1.47023 * 125.64882 * 0.02562 * 11 9 8 13 13 C 1.54323 * 107.27426 * 181.02283 * 12 11 9 14 14 H 1.08997 * 110.71939 * 140.55525 * 13 12 11 15 15 N 1.46502 * 110.72336 * 263.65768 * 13 12 11 16 16 C 1.36937 * 119.99796 * 273.54727 * 15 13 12 17 17 H 1.08003 * 120.00066 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00072 * 179.97438 * 16 15 13 19 19 N 1.31619 * 119.99982 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 119.99962 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47615 * 89.99787 * 20 18 16 22 22 H 1.48501 * 109.47537 * 209.99798 * 20 18 16 23 23 H 1.48507 * 109.47371 * 329.99794 * 20 18 16 24 24 C 1.55164 * 102.93830 * 22.19537 * 13 12 11 25 25 C 1.52995 * 111.00259 * 82.57399 * 24 13 12 26 26 C 1.53008 * 110.99982 * 206.38328 * 24 13 12 27 27 C 1.47427 * 125.65125 * 179.71757 * 11 9 8 28 28 O 1.34638 * 106.10978 * 0.02562 * 8 7 6 29 29 N 1.20887 * 111.47260 * 359.71112 * 28 8 7 30 30 H 1.09001 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47229 * 300.00420 * 1 2 3 32 32 H 1.09000 * 109.46883 * 59.99966 * 1 2 3 33 33 H 1.08994 * 109.47229 * 239.99579 * 2 1 3 34 34 H 1.08998 * 109.46376 * 120.00020 * 2 1 3 35 35 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 36 36 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 37 37 H 1.09004 * 109.47261 * 59.99813 * 5 3 2 38 38 H 1.07993 * 128.07936 * 0.02595 * 7 6 3 39 39 H 1.08991 * 109.88444 * 300.44321 * 12 11 9 40 40 H 1.09001 * 109.87978 * 61.45529 * 12 11 9 41 41 H 0.97000 * 119.99997 * 93.53886 * 15 13 12 42 42 H 0.96997 * 119.99851 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.47335 * 59.99851 * 25 24 13 44 44 H 1.08998 * 109.46890 * 179.97438 * 25 24 13 45 45 H 1.08999 * 109.47255 * 299.99341 * 25 24 13 46 46 H 1.09001 * 109.46743 * 60.00330 * 26 24 13 47 47 H 1.09006 * 109.46735 * 179.97438 * 26 24 13 48 48 H 1.08993 * 109.47588 * 300.00140 * 26 24 13 49 49 H 1.08999 * 110.36553 * 274.75182 * 27 11 9 50 50 H 1.08998 * 110.36729 * 37.06645 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5420 1.4442 -0.1238 7 6 4.4759 1.3138 0.9279 8 6 5.6891 1.3774 0.2983 9 6 7.0203 1.2925 0.9280 10 8 7.1155 1.1502 2.1318 11 7 8.1311 1.3717 0.1689 12 6 8.1609 1.5424 -1.2911 13 6 9.6430 1.5532 -1.7211 14 1 9.7777 1.0069 -2.6546 15 7 10.1350 2.9270 -1.8509 16 6 9.9691 3.6052 -3.0290 17 1 9.4759 3.1272 -3.8624 18 6 10.4348 4.9071 -3.1519 19 7 10.2758 5.5587 -4.2844 20 14 11.2873 5.7341 -1.7102 21 1 12.7468 5.4693 -1.7798 22 1 11.0467 7.1984 -1.7665 23 1 10.7460 5.1922 -0.4379 24 6 10.3499 0.8213 -0.5497 25 6 10.2538 -0.6968 -0.7140 26 6 11.8089 1.2654 -0.4264 27 6 9.5177 1.3078 0.6657 28 8 5.4221 1.5332 -1.0122 29 7 4.2318 1.5619 -1.2209 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 0.5489 2.1253 1.3968 36 1 1.9990 3.1541 1.3074 37 1 2.0698 1.5875 2.1492 38 1 4.2786 1.1922 1.9827 39 1 7.6415 0.7136 -1.7719 40 1 7.6865 2.4852 -1.5638 41 1 10.5782 3.3562 -1.1025 42 1 10.6016 6.4683 -4.3704 43 1 10.7302 -0.9920 -1.6489 44 1 10.7577 -1.1851 0.1201 45 1 9.2055 -0.9949 -0.7304 46 1 11.8475 2.3390 -0.2418 47 1 12.2805 0.7373 0.4024 48 1 12.3378 1.0366 -1.3515 49 1 9.8515 2.2945 0.9866 50 1 9.5940 0.5950 1.4868 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996381095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:00 Heat of formation + Delta-G solvation = 13.795009 kcal Electronic energy + Delta-G solvation = -30059.107484 eV Core-core repulsion = 26089.085041 eV Total energy + Delta-G solvation = -3970.022443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -46.12734 -41.48141 -39.50780 -38.14376 -35.92103 -34.82793 -34.24518 -33.09993 -32.91768 -30.40931 -29.84297 -28.16847 -27.97849 -26.29997 -25.67965 -24.45762 -24.01840 -22.83247 -21.86566 -20.67091 -20.31699 -19.43068 -18.88662 -18.62648 -17.55107 -17.31921 -16.85476 -16.45858 -16.12235 -15.94326 -15.55989 -15.26749 -15.05424 -14.82740 -14.64943 -14.59103 -14.45939 -13.87151 -13.70094 -13.65835 -13.50704 -13.23647 -13.03612 -12.94662 -12.85904 -12.79634 -12.73868 -12.52476 -12.25701 -12.21582 -11.99349 -11.96033 -11.90010 -11.61619 -11.60120 -11.55232 -11.29441 -11.10441 -11.01071 -10.88741 -9.84595 -9.35059 -8.01590 -5.35121 -0.36040 0.94639 1.35847 1.38382 1.40169 1.44777 1.77700 1.98813 2.47205 2.89501 3.11925 3.27309 3.41459 3.52050 3.71186 3.77121 3.84880 3.95161 3.96378 4.03144 4.11972 4.23015 4.40215 4.41373 4.50304 4.53874 4.57707 4.59838 4.71945 4.72626 4.83111 4.86759 4.90519 4.93142 5.00201 5.02298 5.06709 5.08410 5.10560 5.13038 5.16748 5.27104 5.36171 5.39036 5.47262 5.51605 5.79637 6.17191 6.22374 6.63363 6.99171 7.07788 7.82492 8.00452 9.19673 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.003224 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.192767 B = 8681.683426 C = 9741.160419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.014 4.014 4 H 0.087 0.913 5 C -0.145 4.145 6 C 0.024 3.976 7 C -0.140 4.140 8 C -0.092 4.092 9 C 0.614 3.386 10 O -0.546 6.546 11 N -0.591 5.591 12 C 0.080 3.920 13 C 0.176 3.824 14 H 0.083 0.917 15 N -0.737 5.737 16 C -0.223 4.223 17 H 0.065 0.935 18 C -0.058 4.058 19 N -0.981 5.981 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.302 1.302 23 H -0.258 1.258 24 C -0.077 4.077 25 C -0.125 4.125 26 C -0.127 4.127 27 C 0.116 3.884 28 O 0.105 5.895 29 N -0.370 5.370 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.203 0.797 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.366 0.634 42 H 0.256 0.744 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.040 0.960 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.892 -14.939 13.982 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.033 4.033 4 H 0.105 0.895 5 C -0.203 4.203 6 C -0.134 4.134 7 C -0.162 4.162 8 C -0.157 4.157 9 C 0.401 3.599 10 O -0.425 6.425 11 N -0.322 5.322 12 C -0.045 4.045 13 C 0.066 3.934 14 H 0.101 0.899 15 N -0.380 5.380 16 C -0.354 4.354 17 H 0.083 0.917 18 C -0.250 4.250 19 N -0.632 5.632 20 Si 0.770 3.230 21 H -0.198 1.198 22 H -0.229 1.229 23 H -0.183 1.183 24 C -0.078 4.078 25 C -0.182 4.182 26 C -0.185 4.185 27 C -0.006 4.006 28 O 0.035 5.965 29 N -0.073 5.073 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.220 0.780 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.201 0.799 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.247 -14.818 13.136 23.825 hybrid contribution 0.555 1.301 0.808 1.629 sum -12.692 -13.517 13.944 23.200 Atomic orbital electron populations 1.21805 0.93446 1.02639 1.02753 1.21540 0.97579 0.93594 1.02325 1.19805 0.83116 0.99042 1.01343 0.89507 1.21915 1.03367 1.00049 0.94921 1.24166 1.00251 1.01423 0.87541 1.23069 0.88468 1.01796 1.02903 1.24183 0.97249 1.09481 0.84809 1.16236 0.80959 0.77631 0.85075 1.90816 1.85753 1.52716 1.13250 1.48361 1.06096 1.68563 1.09164 1.23117 1.01626 1.01348 0.78397 1.21437 0.89290 0.85084 0.97620 0.89938 1.42767 1.70240 1.12377 1.12633 1.19008 1.30032 0.95372 0.90938 0.91749 1.25369 1.02746 0.97796 0.99079 1.69863 1.53928 1.12448 1.26942 0.85613 0.79391 0.77432 0.80557 1.19805 1.22914 1.18339 1.22070 0.95664 0.97270 0.92811 1.21662 1.02106 0.91118 1.03344 1.21614 0.93287 1.00573 1.02999 1.22564 0.78820 1.01527 0.97674 1.85103 1.19504 1.66837 1.25014 1.73765 0.89585 1.18343 1.25600 0.91759 0.90890 0.92640 0.93155 0.90756 0.89142 0.92959 0.91052 0.78002 0.90025 0.92657 0.79913 0.93484 0.91117 0.90332 0.92912 0.94052 0.89970 0.91764 0.92015 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.67 71.98 0.70 -0.83 16 2 C -0.11 -1.60 5.38 30.60 0.16 -1.44 16 3 C -0.01 -0.24 2.85 -11.54 -0.03 -0.27 16 4 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 5 C -0.15 -1.84 8.56 71.98 0.62 -1.22 16 6 C 0.02 0.60 6.20 43.56 0.27 0.87 16 7 C -0.14 -3.43 10.13 22.68 0.23 -3.20 16 8 C -0.09 -2.74 7.08 24.39 0.17 -2.56 16 9 C 0.61 19.67 7.85 86.69 0.68 20.35 16 10 O -0.55 -18.97 17.17 -4.00 -0.07 -19.03 16 11 N -0.59 -18.36 3.31 -815.15 -2.70 -21.06 16 12 C 0.08 2.67 5.00 86.73 0.43 3.10 16 13 C 0.18 5.93 2.86 46.18 0.13 6.06 16 14 H 0.08 2.81 8.02 -2.39 -0.02 2.79 16 15 N -0.74 -31.69 4.42 -317.31 -1.40 -33.10 16 16 C -0.22 -11.99 10.46 84.03 0.88 -11.11 16 17 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 18 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 19 N -0.98 -61.94 13.97 21.65 0.30 -61.64 16 20 Si 0.94 44.73 27.73 68.60 1.90 46.63 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 23 H -0.26 -11.26 6.52 99.48 0.65 -10.61 16 24 C -0.08 -1.97 0.84 -50.71 -0.04 -2.02 16 25 C -0.12 -2.49 8.58 71.98 0.62 -1.88 16 26 C -0.13 -3.13 8.22 71.98 0.59 -2.54 16 27 C 0.12 3.20 5.83 86.93 0.51 3.71 16 28 O 0.11 3.40 9.02 65.87 0.59 4.00 16 29 N -0.37 -11.41 12.04 -48.87 -0.59 -12.00 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.57 6.56 -2.39 -0.02 0.55 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 0.79 6.57 -2.39 -0.02 0.77 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.79 7.48 -2.38 -0.02 0.77 16 38 H 0.20 3.84 7.65 -2.91 -0.02 3.82 16 39 H 0.08 2.45 7.73 -2.39 -0.02 2.43 16 40 H 0.05 2.20 7.73 -2.39 -0.02 2.19 16 41 H 0.37 15.43 3.98 -92.71 -0.37 15.06 16 42 H 0.26 15.55 8.31 -92.71 -0.77 14.77 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.05 1.10 7.91 -2.39 -0.02 1.08 16 46 H 0.04 1.17 6.39 -2.39 -0.02 1.16 16 47 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 48 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.06 1.85 7.99 -2.39 -0.02 1.83 16 50 H 0.10 2.35 7.95 -2.39 -0.02 2.33 16 Total: -1.00 -69.21 397.17 4.93 -64.28 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.51 Total: 27.79 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 6.38 Total: 4.14 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -4.39 Total: -127.80 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.53 Total: -15.04 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Total: -69.21 4.93 -64.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996381095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.077 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds