Wall clock time and date at job start Tue Mar 31 2020 19:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47358 * 2 1 4 4 N 1.46503 * 109.47259 * 119.99436 * 2 1 3 5 5 C 1.34418 * 124.35315 * 299.98204 * 4 2 1 6 6 O 1.21280 * 124.93728 * 359.64435 * 5 4 2 7 7 C 1.51277 * 110.11856 * 179.60816 * 5 4 2 8 8 C 1.54633 * 104.19630 * 343.74662 * 7 5 4 9 9 C 1.46767 * 124.34683 * 119.99670 * 4 2 1 10 10 H 1.08998 * 110.24372 * 78.00159 * 9 4 2 11 11 C 1.50700 * 110.24807 * 316.08993 * 9 4 2 12 12 O 1.21281 * 119.99874 * 359.97438 * 11 9 4 13 13 N 1.34775 * 119.99986 * 180.02562 * 11 9 4 14 14 C 1.46495 * 120.00203 * 179.97438 * 13 11 9 15 15 C 1.50696 * 109.47409 * 179.97438 * 14 13 11 16 16 C 1.29463 * 117.69166 * 95.00079 * 15 14 13 17 17 C 1.50320 * 123.64594 * 180.85727 * 16 15 14 18 18 N 1.47001 * 109.17333 * 349.02468 * 17 16 15 19 19 C 1.36937 * 121.37470 * 222.97242 * 18 17 16 20 20 H 1.08003 * 119.99711 * 155.97225 * 19 18 17 21 21 C 1.38810 * 120.00076 * 335.96440 * 19 18 17 22 22 N 1.31620 * 119.99951 * 344.51842 * 21 19 18 23 23 Si 1.86796 * 120.00225 * 164.51732 * 21 19 18 24 24 H 1.48509 * 109.46939 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47468 * 119.99985 * 23 21 19 26 26 H 1.48498 * 109.47364 * 240.00559 * 23 21 19 27 27 C 1.47341 * 117.25005 * 42.94130 * 18 17 16 28 28 C 1.49964 * 117.69756 * 274.73961 * 15 14 13 29 29 H 1.09000 * 109.47257 * 300.00149 * 1 2 3 30 30 H 1.08997 * 109.47319 * 60.00196 * 1 2 3 31 31 H 1.08999 * 109.47478 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47512 * 239.99913 * 2 1 3 33 33 H 1.09007 * 109.47186 * 299.99829 * 3 2 1 34 34 H 1.09000 * 109.47058 * 59.99730 * 3 2 1 35 35 H 1.08998 * 109.47684 * 179.97438 * 3 2 1 36 36 H 1.09000 * 110.48742 * 102.41999 * 7 5 4 37 37 H 1.08996 * 110.49022 * 225.07094 * 7 5 4 38 38 H 1.08999 * 110.97238 * 142.91670 * 8 7 5 39 39 H 1.09003 * 110.96720 * 266.67977 * 8 7 5 40 40 H 0.97005 * 119.99959 * 359.97438 * 13 11 9 41 41 H 1.09003 * 109.46883 * 300.00295 * 14 13 11 42 42 H 1.09005 * 109.46996 * 59.99633 * 14 13 11 43 43 H 1.07995 * 118.17319 * 0.88103 * 16 15 14 44 44 H 1.09003 * 109.51855 * 108.93118 * 17 16 15 45 45 H 1.08998 * 109.52242 * 229.10984 * 17 16 15 46 46 H 0.96997 * 120.00062 * 180.02562 * 22 21 19 47 47 H 1.09006 * 109.77326 * 57.81045 * 27 18 17 48 48 H 1.08990 * 109.78104 * 178.62170 * 27 18 17 49 49 H 1.09008 * 109.31755 * 281.29168 * 28 15 14 50 50 H 1.09004 * 109.31172 * 40.71520 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7483 -0.3079 2.4562 6 8 1.0759 0.6543 2.7609 7 6 2.4044 -1.2527 3.4388 8 6 2.7612 -2.4950 2.5899 9 6 2.8655 -1.8887 1.1728 10 1 3.8980 -1.6164 0.9542 11 6 2.3564 -2.8674 0.1462 12 8 1.3742 -2.5991 -0.5127 13 7 2.9921 -4.0413 -0.0391 14 6 2.4969 -4.9930 -1.0367 15 6 3.3785 -6.2152 -1.0461 16 6 3.0099 -7.2284 -0.3295 17 6 3.7960 -8.5055 -0.2262 18 7 4.8568 -8.5031 -1.2439 19 6 5.1341 -9.6191 -1.9873 20 1 5.6080 -9.5208 -2.9528 21 6 4.8064 -10.8768 -1.4999 22 7 4.5177 -11.0340 -0.2254 23 14 4.7749 -12.3463 -2.6527 24 1 5.1342 -11.9066 -4.0250 25 1 5.7522 -13.3625 -2.1863 26 1 3.4129 -12.9378 -2.6638 27 6 5.6089 -7.2500 -1.4314 28 6 4.6178 -6.1742 -1.8896 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 0.0005 36 1 3.3060 -0.8039 3.8557 37 1 1.7081 -1.5208 4.2333 38 1 3.7144 -2.9208 2.9031 39 1 1.9679 -3.2410 2.6376 40 1 3.7775 -4.2561 0.4882 41 1 1.4762 -5.2827 -0.7872 42 1 2.5118 -4.5271 -2.0221 43 1 2.0861 -7.1519 0.2246 44 1 4.2427 -8.5790 0.7654 45 1 3.1339 -9.3552 -0.3923 46 1 4.2891 -11.9130 0.1153 47 1 6.0719 -6.9535 -0.4902 48 1 6.3763 -7.3908 -2.1925 49 1 4.3502 -6.3460 -2.9322 50 1 5.0846 -5.1936 -1.7970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001079559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:21 Heat of formation + Delta-G solvation = -30.305243 kcal Electronic energy + Delta-G solvation = -29535.268718 eV Core-core repulsion = 25563.333944 eV Total energy + Delta-G solvation = -3971.934773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.30004 -39.37602 -37.86442 -36.42590 -35.44928 -34.89041 -32.97533 -31.04057 -30.33229 -29.86280 -28.83810 -27.26268 -26.66551 -24.27239 -23.01828 -22.77668 -22.61496 -21.22113 -20.75036 -19.09296 -17.95895 -17.62142 -17.29470 -16.14412 -15.99901 -15.69553 -15.39474 -15.18065 -14.99224 -14.39985 -14.15346 -14.05712 -13.92721 -13.80607 -13.65898 -13.51782 -13.24970 -13.07214 -12.80896 -12.43993 -12.25171 -12.18442 -12.10088 -12.05811 -11.64990 -11.49448 -11.45511 -11.38573 -11.17063 -10.98498 -10.81231 -10.49295 -10.35666 -10.18091 -9.90351 -9.75963 -9.68251 -9.13460 -8.94851 -8.75660 -8.15392 -6.82888 -5.87373 -3.26323 2.25098 2.37948 2.45681 2.70226 3.32695 3.34330 3.41086 3.42769 3.92555 4.03804 4.36609 4.43073 4.53340 4.70579 4.82386 4.89813 5.03775 5.10962 5.17253 5.25028 5.27628 5.31874 5.38788 5.48625 5.48996 5.52342 5.57266 5.66249 5.71105 5.82441 5.83938 5.97124 5.99492 6.06233 6.20018 6.22988 6.33191 6.41418 6.44502 6.64014 6.77461 6.89157 7.06456 7.15939 7.22220 7.39515 7.64654 7.74260 7.92901 8.04865 8.30294 9.11904 9.74474 10.31793 11.23152 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027201 B = 0.002188 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.140155 B =12793.415507 C =13166.219613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 C -0.169 4.169 4 N -0.594 5.594 5 C 0.520 3.480 6 O -0.528 6.528 7 C -0.155 4.155 8 C -0.123 4.123 9 C 0.111 3.889 10 H 0.107 0.893 11 C 0.503 3.497 12 O -0.529 6.529 13 N -0.714 5.714 14 C 0.159 3.841 15 C -0.168 4.168 16 C -0.121 4.121 17 C 0.193 3.807 18 N -0.595 5.595 19 C -0.246 4.246 20 H 0.069 0.931 21 C -0.001 4.001 22 N -0.909 5.909 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.144 3.856 28 C -0.090 4.090 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.403 0.597 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.042 0.958 45 H 0.094 0.906 46 H 0.254 0.746 47 H 0.023 0.977 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 19.700 4.802 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 C -0.227 4.227 4 N -0.328 5.328 5 C 0.308 3.692 6 O -0.404 6.404 7 C -0.195 4.195 8 C -0.162 4.162 9 C 0.003 3.997 10 H 0.124 0.876 11 C 0.287 3.713 12 O -0.406 6.406 13 N -0.366 5.366 14 C 0.036 3.964 15 C -0.169 4.169 16 C -0.142 4.142 17 C 0.068 3.932 18 N -0.319 5.319 19 C -0.376 4.376 20 H 0.087 0.913 21 C -0.199 4.199 22 N -0.555 5.555 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.017 3.983 28 C -0.129 4.129 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.237 0.763 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.060 0.940 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.960 20.277 4.448 20.969 hybrid contribution 0.314 -1.077 -0.373 1.182 sum -2.646 19.199 4.075 19.805 Atomic orbital electron populations 1.22075 0.94486 1.03062 1.02068 1.20943 0.95005 0.91706 0.86504 1.22238 1.00957 0.96336 1.03150 1.48189 1.50631 1.27174 1.06771 1.20801 0.79739 0.85132 0.83554 1.90699 1.39422 1.29012 1.81262 1.22385 1.03159 0.95409 0.98574 1.22646 1.04750 0.97683 0.91074 1.21646 0.95935 0.85960 0.96180 0.87561 1.20622 0.84087 0.82597 0.84030 1.90717 1.25786 1.76330 1.47731 1.46172 1.32055 1.17565 1.40772 1.20473 0.96693 0.87796 0.91412 1.20482 0.98852 0.94636 1.02915 1.23303 0.98358 0.97252 0.95310 1.19768 0.89630 0.91884 0.91900 1.44136 1.36027 1.08174 1.43515 1.19221 1.36782 0.83921 0.97630 0.91293 1.24990 1.01883 0.97488 0.95538 1.70007 1.51546 1.22455 1.11471 0.86184 0.77367 0.82695 0.80307 1.20291 1.21711 1.21560 1.20988 0.92590 0.86812 0.97883 1.20787 0.94486 0.98962 0.98647 0.91933 0.92079 0.91393 0.88776 0.91498 0.91202 0.92789 0.87446 0.87676 0.87920 0.89260 0.76280 0.91597 0.91526 0.88789 0.94036 0.88852 0.93608 0.95856 0.92459 0.91736 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.03 37.15 0.34 -1.53 16 2 C 0.16 1.74 2.38 -67.93 -0.16 1.58 16 3 C -0.17 -1.61 9.20 37.16 0.34 -1.27 16 4 N -0.59 -6.10 2.58 -158.68 -0.41 -6.51 16 5 C 0.52 5.72 7.41 -10.86 -0.08 5.64 16 6 O -0.53 -7.61 15.12 5.56 0.08 -7.53 16 7 C -0.16 -1.06 6.86 -26.74 -0.18 -1.24 16 8 C -0.12 -0.74 6.65 -25.09 -0.17 -0.90 16 9 C 0.11 0.89 3.70 -68.16 -0.25 0.64 16 10 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 11 C 0.50 5.42 6.82 -10.99 -0.07 5.35 16 12 O -0.53 -7.55 12.94 5.56 0.07 -7.48 16 13 N -0.71 -7.32 5.52 -61.47 -0.34 -7.66 16 14 C 0.16 2.05 5.66 -5.20 -0.03 2.02 16 15 C -0.17 -2.56 5.22 -101.00 -0.53 -3.09 16 16 C -0.12 -2.10 9.47 -35.78 -0.34 -2.44 16 17 C 0.19 4.28 5.23 -5.10 -0.03 4.25 16 18 N -0.60 -14.04 3.01 -173.57 -0.52 -14.56 16 19 C -0.25 -6.48 9.71 -15.06 -0.15 -6.63 16 20 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 21 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 22 N -0.91 -25.29 11.08 55.49 0.61 -24.67 16 23 Si 0.90 21.11 29.58 -169.99 -5.03 16.08 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 C 0.14 2.74 6.59 -3.43 -0.02 2.71 16 28 C -0.09 -1.41 5.95 -28.09 -0.17 -1.57 16 29 H 0.06 0.81 6.80 -51.93 -0.35 0.46 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.91 7.04 -51.93 -0.37 0.55 16 32 H 0.09 1.08 6.56 -51.93 -0.34 0.74 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.79 6.77 -51.93 -0.35 0.44 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.62 7.91 -51.93 -0.41 0.21 16 40 H 0.40 3.38 8.46 -40.82 -0.35 3.03 16 41 H 0.07 0.91 7.78 -51.93 -0.40 0.51 16 42 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 43 H 0.09 1.45 7.73 -52.49 -0.41 1.05 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.09 2.35 6.41 -51.93 -0.33 2.02 16 46 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.07 7.96 -51.93 -0.41 0.66 16 49 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 50 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -31.92 393.31 -9.53 -41.45 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.34 Total: 1.56 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.59 Total: 3.39 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.66 Total: -53.40 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.16 Total: -15.00 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.92 -9.53 -41.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001079559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.143 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds