Wall clock time and date at job start Tue Mar 31 2020 19:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47358 * 2 1 4 4 N 1.46503 * 109.47259 * 119.99436 * 2 1 3 5 5 C 1.34418 * 124.35315 * 299.98204 * 4 2 1 6 6 O 1.21280 * 124.93728 * 359.64435 * 5 4 2 7 7 C 1.51277 * 110.11856 * 179.60816 * 5 4 2 8 8 C 1.54633 * 104.19630 * 343.74662 * 7 5 4 9 9 C 1.46767 * 124.34683 * 119.99670 * 4 2 1 10 10 H 1.08998 * 110.24372 * 78.00159 * 9 4 2 11 11 C 1.50700 * 110.24807 * 316.08993 * 9 4 2 12 12 O 1.21281 * 119.99874 * 359.97438 * 11 9 4 13 13 N 1.34775 * 119.99986 * 180.02562 * 11 9 4 14 14 C 1.46495 * 120.00203 * 179.97438 * 13 11 9 15 15 C 1.50696 * 109.47409 * 179.97438 * 14 13 11 16 16 C 1.29463 * 117.69166 * 95.00079 * 15 14 13 17 17 C 1.50320 * 123.64594 * 180.85727 * 16 15 14 18 18 N 1.47001 * 109.17333 * 349.02468 * 17 16 15 19 19 C 1.36937 * 121.37470 * 222.97242 * 18 17 16 20 20 H 1.08003 * 119.99711 * 155.97225 * 19 18 17 21 21 C 1.38810 * 120.00076 * 335.96440 * 19 18 17 22 22 N 1.31620 * 119.99951 * 344.51842 * 21 19 18 23 23 Si 1.86796 * 120.00225 * 164.51732 * 21 19 18 24 24 H 1.48509 * 109.46939 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47468 * 119.99985 * 23 21 19 26 26 H 1.48498 * 109.47364 * 240.00559 * 23 21 19 27 27 C 1.47341 * 117.25005 * 42.94130 * 18 17 16 28 28 C 1.49964 * 117.69756 * 274.73961 * 15 14 13 29 29 H 1.09000 * 109.47257 * 300.00149 * 1 2 3 30 30 H 1.08997 * 109.47319 * 60.00196 * 1 2 3 31 31 H 1.08999 * 109.47478 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47512 * 239.99913 * 2 1 3 33 33 H 1.09007 * 109.47186 * 299.99829 * 3 2 1 34 34 H 1.09000 * 109.47058 * 59.99730 * 3 2 1 35 35 H 1.08998 * 109.47684 * 179.97438 * 3 2 1 36 36 H 1.09000 * 110.48742 * 102.41999 * 7 5 4 37 37 H 1.08996 * 110.49022 * 225.07094 * 7 5 4 38 38 H 1.08999 * 110.97238 * 142.91670 * 8 7 5 39 39 H 1.09003 * 110.96720 * 266.67977 * 8 7 5 40 40 H 0.97005 * 119.99959 * 359.97438 * 13 11 9 41 41 H 1.09003 * 109.46883 * 300.00295 * 14 13 11 42 42 H 1.09005 * 109.46996 * 59.99633 * 14 13 11 43 43 H 1.07995 * 118.17319 * 0.88103 * 16 15 14 44 44 H 1.09003 * 109.51855 * 108.93118 * 17 16 15 45 45 H 1.08998 * 109.52242 * 229.10984 * 17 16 15 46 46 H 0.96997 * 120.00062 * 180.02562 * 22 21 19 47 47 H 1.09006 * 109.77326 * 57.81045 * 27 18 17 48 48 H 1.08990 * 109.78104 * 178.62170 * 27 18 17 49 49 H 1.09008 * 109.31755 * 281.29168 * 28 15 14 50 50 H 1.09004 * 109.31172 * 40.71520 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7483 -0.3079 2.4562 6 8 1.0759 0.6543 2.7609 7 6 2.4044 -1.2527 3.4388 8 6 2.7612 -2.4950 2.5899 9 6 2.8655 -1.8887 1.1728 10 1 3.8980 -1.6164 0.9542 11 6 2.3564 -2.8674 0.1462 12 8 1.3742 -2.5991 -0.5127 13 7 2.9921 -4.0413 -0.0391 14 6 2.4969 -4.9930 -1.0367 15 6 3.3785 -6.2152 -1.0461 16 6 3.0099 -7.2284 -0.3295 17 6 3.7960 -8.5055 -0.2262 18 7 4.8568 -8.5031 -1.2439 19 6 5.1341 -9.6191 -1.9873 20 1 5.6080 -9.5208 -2.9528 21 6 4.8064 -10.8768 -1.4999 22 7 4.5177 -11.0340 -0.2254 23 14 4.7749 -12.3463 -2.6527 24 1 5.1342 -11.9066 -4.0250 25 1 5.7522 -13.3625 -2.1863 26 1 3.4129 -12.9378 -2.6638 27 6 5.6089 -7.2500 -1.4314 28 6 4.6178 -6.1742 -1.8896 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 0.0005 36 1 3.3060 -0.8039 3.8557 37 1 1.7081 -1.5208 4.2333 38 1 3.7144 -2.9208 2.9031 39 1 1.9679 -3.2410 2.6376 40 1 3.7775 -4.2561 0.4882 41 1 1.4762 -5.2827 -0.7872 42 1 2.5118 -4.5271 -2.0221 43 1 2.0861 -7.1519 0.2246 44 1 4.2427 -8.5790 0.7654 45 1 3.1339 -9.3552 -0.3923 46 1 4.2891 -11.9130 0.1153 47 1 6.0719 -6.9535 -0.4902 48 1 6.3763 -7.3908 -2.1925 49 1 4.3502 -6.3460 -2.9322 50 1 5.0846 -5.1936 -1.7970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001079559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:20 Heat of formation + Delta-G solvation = -50.615427 kcal Electronic energy + Delta-G solvation = -29536.149434 eV Core-core repulsion = 25563.333944 eV Total energy + Delta-G solvation = -3972.815489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.07112 -40.33126 -39.26199 -37.32709 -36.43200 -35.95440 -34.46763 -32.62669 -31.40518 -31.01045 -29.80360 -28.12903 -28.05270 -25.77160 -24.36315 -23.68017 -23.36744 -22.76548 -21.60069 -19.94030 -19.46436 -18.65795 -18.04696 -17.39205 -17.07196 -16.85513 -16.71946 -16.22696 -16.04347 -15.63339 -15.40865 -15.18120 -15.02518 -14.93195 -14.72866 -14.54889 -14.33225 -13.98515 -13.84921 -13.67684 -13.53702 -13.23770 -13.04042 -13.00079 -12.82533 -12.79635 -12.73222 -12.59369 -12.21616 -12.18851 -12.08865 -12.05956 -11.99982 -11.68250 -11.24473 -11.05774 -10.68395 -10.59346 -10.07279 -9.79888 -9.55912 -8.72625 -7.87688 -5.28054 1.18004 1.46353 1.49230 1.51777 1.58343 1.59099 1.89837 2.43348 2.51773 3.28932 3.29880 3.45436 3.65797 3.73419 3.91402 3.96889 4.00868 4.05261 4.12374 4.15823 4.33198 4.47591 4.54452 4.58042 4.68222 4.68988 4.71859 4.78888 4.79816 4.87716 4.88307 4.93149 4.96248 5.00325 5.06725 5.14277 5.17742 5.25564 5.28597 5.40558 5.46112 5.52465 5.61304 5.63495 5.80779 6.13461 6.20514 6.35666 6.56999 7.13108 7.15531 7.23746 7.86150 8.38531 9.20741 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027201 B = 0.002188 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.140155 B =12793.415507 C =13166.219613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.157 3.843 3 C -0.160 4.160 4 N -0.598 5.598 5 C 0.506 3.494 6 O -0.572 6.572 7 C -0.146 4.146 8 C -0.115 4.115 9 C 0.112 3.888 10 H 0.141 0.859 11 C 0.504 3.496 12 O -0.566 6.566 13 N -0.703 5.703 14 C 0.171 3.829 15 C -0.137 4.137 16 C -0.141 4.141 17 C 0.204 3.796 18 N -0.616 5.616 19 C -0.253 4.253 20 H 0.069 0.931 21 C -0.054 4.054 22 N -0.938 5.938 23 Si 0.964 3.036 24 H -0.268 1.268 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.138 3.862 28 C -0.084 4.084 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.140 0.860 39 H 0.078 0.922 40 H 0.416 0.584 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.016 0.984 45 H 0.053 0.947 46 H 0.249 0.751 47 H 0.033 0.967 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 21.144 4.533 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 C -0.218 4.218 4 N -0.331 5.331 5 C 0.296 3.704 6 O -0.452 6.452 7 C -0.186 4.186 8 C -0.153 4.153 9 C 0.005 3.995 10 H 0.159 0.841 11 C 0.290 3.710 12 O -0.445 6.445 13 N -0.355 5.355 14 C 0.047 3.953 15 C -0.138 4.138 16 C -0.161 4.161 17 C 0.079 3.921 18 N -0.340 5.340 19 C -0.383 4.383 20 H 0.087 0.913 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.792 3.208 24 H -0.192 1.192 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.013 3.987 28 C -0.122 4.122 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.127 0.873 38 H 0.158 0.842 39 H 0.097 0.903 40 H 0.253 0.747 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.130 0.870 44 H 0.034 0.966 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.051 0.949 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.456 21.729 4.175 22.174 hybrid contribution -0.115 -1.455 -0.342 1.499 sum -1.571 20.274 3.832 20.693 Atomic orbital electron populations 1.21983 0.95667 1.01485 1.01781 1.20919 0.94125 0.92579 0.86895 1.22147 1.01582 0.95307 1.02722 1.48333 1.50618 1.27674 1.06469 1.21585 0.79224 0.85120 0.84467 1.90673 1.41406 1.31110 1.81998 1.22421 1.03862 0.94654 0.97635 1.22738 1.06400 0.96894 0.89223 1.21903 0.96750 0.84421 0.96408 0.84129 1.21096 0.83333 0.82679 0.83919 1.90721 1.27482 1.77058 1.49267 1.45931 1.32407 1.16928 1.40252 1.20175 0.95720 0.87091 0.92299 1.20585 0.98242 0.94681 1.00277 1.22924 0.99213 0.95714 0.98249 1.19402 0.89101 0.93135 0.90452 1.44424 1.37189 1.08988 1.43430 1.19526 1.35823 0.85106 0.97896 0.91306 1.25687 1.02549 0.99886 0.96761 1.70155 1.52980 1.22493 1.12897 0.85253 0.76767 0.79687 0.79046 1.19224 1.21968 1.21997 1.21195 0.93239 0.85850 0.98416 1.20724 0.93846 0.99596 0.98064 0.93645 0.90905 0.93460 0.89042 0.90305 0.93206 0.91588 0.84842 0.87264 0.84172 0.90283 0.74688 0.92343 0.91378 0.87035 0.96609 0.92837 0.94177 0.94927 0.92523 0.92193 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.03 71.98 0.65 -2.95 16 2 C 0.16 3.26 2.38 44.99 0.11 3.37 16 3 C -0.16 -2.87 9.20 71.98 0.66 -2.21 16 4 N -0.60 -11.23 2.58 -774.54 -2.00 -13.23 16 5 C 0.51 10.50 7.41 87.90 0.65 11.15 16 6 O -0.57 -16.62 15.12 -3.03 -0.05 -16.67 16 7 C -0.15 -1.56 6.86 30.59 0.21 -1.35 16 8 C -0.11 -0.92 6.65 31.65 0.21 -0.71 16 9 C 0.11 1.40 3.70 44.70 0.17 1.57 16 10 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 11 C 0.50 9.43 6.82 87.66 0.60 10.03 16 12 O -0.57 -15.29 12.94 -3.03 -0.04 -15.33 16 13 N -0.70 -11.86 5.52 -466.80 -2.58 -14.44 16 14 C 0.17 3.91 5.66 85.63 0.48 4.40 16 15 C -0.14 -3.83 5.22 -15.15 -0.08 -3.91 16 16 C -0.14 -4.71 9.47 27.10 0.26 -4.45 16 17 C 0.20 9.23 5.23 85.42 0.45 9.67 16 18 N -0.62 -29.08 3.01 -703.05 -2.11 -31.19 16 19 C -0.25 -13.42 9.71 84.03 0.82 -12.61 16 20 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 21 C -0.05 -2.93 5.01 84.86 0.43 -2.51 16 22 N -0.94 -53.74 11.08 21.65 0.24 -53.50 16 23 Si 0.96 43.98 29.58 68.60 2.03 46.01 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 27 C 0.14 5.01 6.59 86.31 0.57 5.58 16 28 C -0.08 -2.36 5.95 29.71 0.18 -2.18 16 29 H 0.04 1.22 6.80 -2.39 -0.02 1.20 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.30 7.04 -2.39 -0.02 1.28 16 32 H 0.09 1.96 6.56 -2.39 -0.02 1.95 16 33 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.05 1.11 6.77 -2.39 -0.02 1.10 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.08 0.85 7.91 -2.39 -0.02 0.83 16 40 H 0.42 5.03 8.46 -92.70 -0.78 4.25 16 41 H 0.06 1.48 7.78 -2.39 -0.02 1.47 16 42 H 0.07 1.62 8.11 -2.38 -0.02 1.60 16 43 H 0.11 3.32 7.73 -2.91 -0.02 3.30 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.05 2.81 6.41 -2.39 -0.02 2.80 16 46 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 47 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.06 2.03 7.96 -2.39 -0.02 2.01 16 49 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 50 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.28 393.31 2.00 -71.28 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.15 Total: 14.18 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 6.35 Total: 12.90 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -6.45 Total: -112.36 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.09 Total: -32.00 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -73.28 2.00 -71.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001079559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.665 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds