Wall clock time and date at job start Tue Mar 31 2020 19:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47153 * 2 1 4 4 N 1.46496 * 109.46749 * 179.97438 * 3 2 1 5 5 C 1.46826 * 124.33566 * 269.93313 * 4 3 2 6 6 C 1.54480 * 105.44315 * 197.00169 * 5 4 3 7 7 H 1.09002 * 110.96541 * 92.76866 * 6 5 4 8 8 C 1.50697 * 110.97031 * 216.49117 * 6 5 4 9 9 O 1.21288 * 119.99701 * 356.91672 * 8 6 5 10 10 N 1.34771 * 120.00074 * 176.91431 * 8 6 5 11 11 C 1.46507 * 120.00095 * 180.02562 * 10 8 6 12 12 C 1.50697 * 109.47326 * 179.97438 * 11 10 8 13 13 C 1.29455 * 117.69188 * 94.97511 * 12 11 10 14 14 C 1.49926 * 123.63059 * 180.62159 * 13 12 11 15 15 N 1.47009 * 109.38423 * 349.42959 * 14 13 12 16 16 C 1.36940 * 121.37470 * 222.83384 * 15 14 13 17 17 H 1.07999 * 120.00017 * 155.29469 * 16 15 14 18 18 C 1.38809 * 119.99828 * 335.28892 * 16 15 14 19 19 N 1.31619 * 120.00296 * 334.48173 * 18 16 15 20 20 Si 1.86806 * 119.99864 * 154.47507 * 18 16 15 21 21 H 1.48497 * 109.47122 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47137 * 300.00350 * 20 18 16 23 23 H 1.48494 * 109.47001 * 60.00272 * 20 18 16 24 24 C 1.47339 * 117.25376 * 42.56146 * 15 14 13 25 25 C 1.49963 * 117.69337 * 274.99724 * 12 11 10 26 26 C 1.54621 * 101.79996 * 334.63303 * 6 5 4 27 27 C 1.34422 * 124.35023 * 89.97942 * 4 3 2 28 28 O 1.21279 * 124.93893 * 359.54425 * 27 4 3 29 29 H 1.08999 * 109.47123 * 300.00173 * 1 2 3 30 30 H 1.08999 * 109.46832 * 59.99725 * 1 2 3 31 31 H 1.08998 * 109.47175 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47123 * 239.99827 * 2 1 3 33 33 H 1.09004 * 109.46765 * 119.99806 * 2 1 3 34 34 H 1.09000 * 109.46744 * 60.00062 * 3 2 1 35 35 H 1.08992 * 109.47111 * 299.99977 * 3 2 1 36 36 H 1.09000 * 110.23553 * 78.02348 * 5 4 3 37 37 H 1.09004 * 110.27873 * 316.00445 * 5 4 3 38 38 H 0.96992 * 120.00449 * 359.97438 * 10 8 6 39 39 H 1.09001 * 109.47311 * 59.99120 * 11 10 8 40 40 H 1.09004 * 109.46628 * 299.99971 * 11 10 8 41 41 H 1.07999 * 118.17818 * 0.88326 * 13 12 11 42 42 H 1.08997 * 109.50796 * 229.40295 * 14 13 12 43 43 H 1.08992 * 109.32006 * 109.34351 * 14 13 12 44 44 H 0.97004 * 119.99990 * 354.13850 * 19 18 16 45 45 H 1.08997 * 109.77707 * 58.07563 * 24 15 14 46 46 H 1.08990 * 109.78322 * 178.83733 * 24 15 14 47 47 H 1.09001 * 109.31501 * 40.71885 * 25 12 11 48 48 H 1.08999 * 109.31558 * 281.29162 * 25 12 11 49 49 H 1.09000 * 110.49115 * 143.46198 * 26 6 5 50 50 H 1.09003 * 110.48564 * 266.09610 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.3327 1.4439 1.2134 6 6 5.7408 1.8786 0.7499 7 1 5.8672 2.9571 0.8454 8 6 6.8111 1.1432 1.5144 9 8 6.5037 0.3759 2.4020 10 7 8.1099 1.3381 1.2118 11 6 9.1505 0.6227 1.9547 12 6 10.5056 1.0147 1.4247 13 6 11.1381 1.9654 2.0346 14 6 12.4856 2.4699 1.6133 15 7 13.0507 1.5655 0.6014 16 6 14.3665 1.1880 0.6377 17 1 14.6757 0.2623 0.1754 18 6 15.3029 1.9954 1.2687 19 7 15.0860 3.2885 1.3839 20 14 16.8710 1.2466 1.9544 21 1 17.6983 2.3124 2.5748 22 1 16.5264 0.2285 2.9791 23 1 17.6344 0.6036 0.8550 24 6 12.1414 1.0770 -0.4500 25 6 11.0261 0.2763 0.2277 26 6 5.7301 1.4522 -0.7363 27 6 4.2640 1.4418 -1.1089 28 8 3.8356 1.4333 -2.2434 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 4.3699 0.4440 1.6457 37 1 3.9382 2.1551 1.9391 38 1 8.3558 1.9514 0.5018 39 1 9.0101 -0.4514 1.8336 40 1 9.0847 0.8807 3.0117 41 1 10.6710 2.4173 2.8972 42 1 13.1473 2.5070 2.4786 43 1 12.3806 3.4691 1.1907 44 1 14.3148 3.6910 0.9548 45 1 11.7132 1.9220 -0.9892 46 1 12.6879 0.4366 -1.1422 47 1 10.2129 0.1198 -0.4810 48 1 11.4172 -0.6911 0.5428 49 1 6.2732 2.1754 -1.3447 50 1 6.1599 0.4570 -0.8507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001213215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:31 Heat of formation + Delta-G solvation = -42.073596 kcal Electronic energy + Delta-G solvation = -28662.832215 eV Core-core repulsion = 24690.387127 eV Total energy + Delta-G solvation = -3972.445088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.18250 -39.59202 -38.06232 -36.72116 -35.29298 -35.15632 -33.22573 -31.94023 -30.92441 -29.82752 -28.16141 -27.33719 -26.42305 -24.46746 -23.12551 -22.86490 -22.19022 -21.20712 -20.48531 -19.76571 -18.13529 -17.90979 -17.20688 -16.58522 -16.19319 -16.10958 -15.59330 -15.42776 -14.99155 -14.69319 -14.39495 -14.22070 -13.94537 -13.87550 -13.82625 -13.64668 -13.47808 -13.24941 -13.03879 -12.59845 -12.56179 -12.26701 -12.24008 -11.95506 -11.86775 -11.76534 -11.69940 -11.55164 -11.14540 -10.90416 -10.72808 -10.55200 -10.39935 -10.07452 -10.04628 -9.96989 -9.45761 -9.20712 -9.09538 -8.60126 -8.27883 -7.00323 -6.12898 -3.26342 2.21197 2.29044 2.33990 2.58147 3.23771 3.47287 3.50993 3.68628 3.82255 3.94168 4.37421 4.43105 4.52415 4.54837 4.56100 4.76489 4.81985 4.94056 4.97498 5.04864 5.14462 5.16071 5.17669 5.19680 5.31377 5.33833 5.47900 5.49734 5.59629 5.61792 5.66558 5.75372 5.80569 5.87472 5.97015 6.13736 6.14069 6.19741 6.30196 6.55372 6.58744 6.69689 6.79014 6.80113 7.04218 7.32623 7.42028 7.79057 7.89818 7.96993 8.49677 9.02219 9.77554 10.22335 11.16726 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032139 B = 0.001891 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.007760 B =14801.182701 C =15092.886725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.126 3.874 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.125 4.125 7 H 0.119 0.881 8 C 0.523 3.477 9 O -0.539 6.539 10 N -0.715 5.715 11 C 0.156 3.844 12 C -0.158 4.158 13 C -0.123 4.123 14 C 0.172 3.828 15 N -0.600 5.600 16 C -0.347 4.347 17 H 0.059 0.941 18 C -0.024 4.024 19 N -0.917 5.917 20 Si 1.063 2.937 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.146 3.854 25 C -0.092 4.092 26 C -0.146 4.146 27 C 0.521 3.479 28 O -0.529 6.529 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.404 0.596 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.036 0.964 44 H 0.268 0.732 45 H 0.021 0.979 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.113 0.887 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.294 -2.202 -0.401 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.005 4.005 6 C -0.147 4.147 7 H 0.137 0.863 8 C 0.308 3.692 9 O -0.416 6.416 10 N -0.366 5.366 11 C 0.034 3.966 12 C -0.159 4.159 13 C -0.143 4.143 14 C 0.047 3.953 15 N -0.324 5.324 16 C -0.476 4.476 17 H 0.077 0.923 18 C -0.226 4.226 19 N -0.558 5.558 20 Si 0.893 3.107 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.019 3.981 25 C -0.131 4.131 26 C -0.186 4.186 27 C 0.308 3.692 28 O -0.405 6.405 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.238 0.762 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.131 0.869 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.377 -2.445 0.509 24.504 hybrid contribution -1.252 -0.088 -1.046 1.634 sum -25.629 -2.532 -0.537 25.760 Atomic orbital electron populations 1.21691 0.94870 1.02168 1.01968 1.21931 0.96369 0.97024 1.02873 1.21468 0.77495 0.97288 1.03267 1.48366 1.06392 1.73449 1.07212 1.21996 0.87762 1.03902 0.86868 1.22253 0.94570 1.02539 0.95313 0.86254 1.20039 0.83361 0.82213 0.83614 1.90723 1.82117 1.37067 1.31741 1.46155 1.05310 1.46409 1.38711 1.20495 0.84461 0.96488 0.95163 1.20532 0.94891 1.00106 1.00342 1.22951 0.98261 0.95638 0.97476 1.19832 0.89702 0.92212 0.93584 1.44172 1.06802 1.55976 1.25480 1.19951 0.83450 1.04167 1.39992 0.92333 1.25817 1.01768 0.94505 1.00505 1.70812 1.30032 1.09458 1.45484 0.83547 0.75594 0.75049 0.76522 1.21068 1.22068 1.21956 1.20949 0.90747 0.95557 0.90827 1.20768 0.98376 0.99246 0.94679 1.22362 0.95667 1.05638 0.94948 1.20748 0.88880 0.75127 0.84429 1.90742 1.78506 1.50238 1.21009 0.92512 0.92458 0.92305 0.91518 0.91530 0.90190 0.89898 0.88985 0.89645 0.76192 0.91261 0.91333 0.88408 0.89698 0.94670 0.92106 0.96065 0.92215 0.92624 0.91500 0.86897 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.14 -0.99 6.26 -26.73 -0.17 -1.16 16 3 C 0.13 0.89 5.93 -4.04 -0.02 0.86 16 4 N -0.62 -5.22 2.93 -172.37 -0.51 -5.72 16 5 C 0.12 0.87 6.69 -3.09 -0.02 0.85 16 6 C -0.12 -0.91 3.54 -90.14 -0.32 -1.23 16 7 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 8 C 0.52 5.43 7.06 -10.99 -0.08 5.35 16 9 O -0.54 -7.52 15.53 5.55 0.09 -7.43 16 10 N -0.72 -7.42 5.54 -61.47 -0.34 -7.76 16 11 C 0.16 2.02 5.66 -5.19 -0.03 1.99 16 12 C -0.16 -2.44 5.22 -100.99 -0.53 -2.97 16 13 C -0.12 -2.12 9.46 -35.97 -0.34 -2.46 16 14 C 0.17 3.79 4.87 -5.29 -0.03 3.76 16 15 N -0.60 -14.38 2.89 -173.91 -0.50 -14.89 16 16 C -0.35 -9.42 9.58 -15.06 -0.14 -9.56 16 17 H 0.06 1.60 7.95 -52.49 -0.42 1.18 16 18 C -0.02 -0.67 4.73 -17.43 -0.08 -0.75 16 19 N -0.92 -26.66 12.55 55.49 0.70 -25.96 16 20 Si 1.06 24.71 29.99 -169.99 -5.10 19.62 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.15 2.86 6.58 -3.53 -0.02 2.84 16 25 C -0.09 -1.48 5.95 -28.18 -0.17 -1.64 16 26 C -0.15 -1.13 6.40 -26.75 -0.17 -1.30 16 27 C 0.52 5.46 8.02 -10.86 -0.09 5.37 16 28 O -0.53 -7.56 17.60 5.56 0.10 -7.46 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.65 7.93 -51.93 -0.41 0.23 16 36 H 0.09 0.81 7.01 -51.93 -0.36 0.45 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.40 3.55 8.46 -40.82 -0.35 3.21 16 39 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 40 H 0.07 0.92 7.78 -51.93 -0.40 0.52 16 41 H 0.10 1.49 7.73 -52.49 -0.41 1.08 16 42 H 0.08 2.11 6.78 -51.93 -0.35 1.76 16 43 H 0.04 0.80 7.40 -51.93 -0.38 0.42 16 44 H 0.27 7.77 6.38 -40.82 -0.26 7.51 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.11 0.88 7.89 -51.93 -0.41 0.47 16 LS Contribution 403.30 15.07 6.08 6.08 Total: -1.00 -33.42 403.30 -9.78 -43.20 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.46 Total: 0.80 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.84 Total: -0.47 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.65 Total: -54.33 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.18 Total: -14.89 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.10 Total: 19.62 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.42 -9.78 -43.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001213215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.130 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds