Wall clock time and date at job start Tue Mar 31 2020 19:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47153 * 2 1 4 4 N 1.46496 * 109.46749 * 179.97438 * 3 2 1 5 5 C 1.46826 * 124.33566 * 269.93313 * 4 3 2 6 6 C 1.54480 * 105.44315 * 197.00169 * 5 4 3 7 7 H 1.09002 * 110.96541 * 92.76866 * 6 5 4 8 8 C 1.50697 * 110.97031 * 216.49117 * 6 5 4 9 9 O 1.21288 * 119.99701 * 356.91672 * 8 6 5 10 10 N 1.34771 * 120.00074 * 176.91431 * 8 6 5 11 11 C 1.46507 * 120.00095 * 180.02562 * 10 8 6 12 12 C 1.50697 * 109.47326 * 179.97438 * 11 10 8 13 13 C 1.29455 * 117.69188 * 94.97511 * 12 11 10 14 14 C 1.49926 * 123.63059 * 180.62159 * 13 12 11 15 15 N 1.47009 * 109.38423 * 349.42959 * 14 13 12 16 16 C 1.36940 * 121.37470 * 222.83384 * 15 14 13 17 17 H 1.07999 * 120.00017 * 155.29469 * 16 15 14 18 18 C 1.38809 * 119.99828 * 335.28892 * 16 15 14 19 19 N 1.31619 * 120.00296 * 334.48173 * 18 16 15 20 20 Si 1.86806 * 119.99864 * 154.47507 * 18 16 15 21 21 H 1.48497 * 109.47122 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47137 * 300.00350 * 20 18 16 23 23 H 1.48494 * 109.47001 * 60.00272 * 20 18 16 24 24 C 1.47339 * 117.25376 * 42.56146 * 15 14 13 25 25 C 1.49963 * 117.69337 * 274.99724 * 12 11 10 26 26 C 1.54621 * 101.79996 * 334.63303 * 6 5 4 27 27 C 1.34422 * 124.35023 * 89.97942 * 4 3 2 28 28 O 1.21279 * 124.93893 * 359.54425 * 27 4 3 29 29 H 1.08999 * 109.47123 * 300.00173 * 1 2 3 30 30 H 1.08999 * 109.46832 * 59.99725 * 1 2 3 31 31 H 1.08998 * 109.47175 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47123 * 239.99827 * 2 1 3 33 33 H 1.09004 * 109.46765 * 119.99806 * 2 1 3 34 34 H 1.09000 * 109.46744 * 60.00062 * 3 2 1 35 35 H 1.08992 * 109.47111 * 299.99977 * 3 2 1 36 36 H 1.09000 * 110.23553 * 78.02348 * 5 4 3 37 37 H 1.09004 * 110.27873 * 316.00445 * 5 4 3 38 38 H 0.96992 * 120.00449 * 359.97438 * 10 8 6 39 39 H 1.09001 * 109.47311 * 59.99120 * 11 10 8 40 40 H 1.09004 * 109.46628 * 299.99971 * 11 10 8 41 41 H 1.07999 * 118.17818 * 0.88326 * 13 12 11 42 42 H 1.08997 * 109.50796 * 229.40295 * 14 13 12 43 43 H 1.08992 * 109.32006 * 109.34351 * 14 13 12 44 44 H 0.97004 * 119.99990 * 354.13850 * 19 18 16 45 45 H 1.08997 * 109.77707 * 58.07563 * 24 15 14 46 46 H 1.08990 * 109.78322 * 178.83733 * 24 15 14 47 47 H 1.09001 * 109.31501 * 40.71885 * 25 12 11 48 48 H 1.08999 * 109.31558 * 281.29162 * 25 12 11 49 49 H 1.09000 * 110.49115 * 143.46198 * 26 6 5 50 50 H 1.09003 * 110.48564 * 266.09610 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.3327 1.4439 1.2134 6 6 5.7408 1.8786 0.7499 7 1 5.8672 2.9571 0.8454 8 6 6.8111 1.1432 1.5144 9 8 6.5037 0.3759 2.4020 10 7 8.1099 1.3381 1.2118 11 6 9.1505 0.6227 1.9547 12 6 10.5056 1.0147 1.4247 13 6 11.1381 1.9654 2.0346 14 6 12.4856 2.4699 1.6133 15 7 13.0507 1.5655 0.6014 16 6 14.3665 1.1880 0.6377 17 1 14.6757 0.2623 0.1754 18 6 15.3029 1.9954 1.2687 19 7 15.0860 3.2885 1.3839 20 14 16.8710 1.2466 1.9544 21 1 17.6983 2.3124 2.5748 22 1 16.5264 0.2285 2.9791 23 1 17.6344 0.6036 0.8550 24 6 12.1414 1.0770 -0.4500 25 6 11.0261 0.2763 0.2277 26 6 5.7301 1.4522 -0.7363 27 6 4.2640 1.4418 -1.1089 28 8 3.8356 1.4333 -2.2434 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 4.3699 0.4440 1.6457 37 1 3.9382 2.1551 1.9391 38 1 8.3558 1.9514 0.5018 39 1 9.0101 -0.4514 1.8336 40 1 9.0847 0.8807 3.0117 41 1 10.6710 2.4173 2.8972 42 1 13.1473 2.5070 2.4786 43 1 12.3806 3.4691 1.1907 44 1 14.3148 3.6910 0.9548 45 1 11.7132 1.9220 -0.9892 46 1 12.6879 0.4366 -1.1422 47 1 10.2129 0.1198 -0.4810 48 1 11.4172 -0.6911 0.5428 49 1 6.2732 2.1754 -1.3447 50 1 6.1599 0.4570 -0.8507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001213215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:30 Heat of formation + Delta-G solvation = -63.336907 kcal Electronic energy + Delta-G solvation = -28663.754261 eV Core-core repulsion = 24690.387127 eV Total energy + Delta-G solvation = -3973.367134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.92583 -40.51726 -39.50243 -37.54937 -36.58715 -35.79789 -34.68755 -32.87899 -32.25684 -31.43945 -28.93916 -28.50098 -27.26897 -25.90511 -24.48877 -23.98560 -22.79519 -22.74459 -21.29801 -20.47739 -19.84174 -18.91161 -17.97011 -17.87543 -17.07727 -17.05451 -16.58035 -16.40288 -16.10958 -15.73860 -15.56788 -15.48266 -15.39207 -14.86116 -14.81271 -14.77872 -14.58361 -14.17160 -13.95420 -13.80105 -13.74953 -13.40610 -13.10119 -13.01223 -12.77283 -12.63920 -12.52806 -12.52103 -12.40995 -12.22932 -12.15014 -11.88784 -11.70611 -11.69039 -11.31607 -11.22626 -10.84620 -10.51615 -10.13298 -9.80283 -9.76243 -8.97416 -8.25661 -5.36917 1.07559 1.43553 1.52982 1.59207 1.66031 1.84867 1.89481 2.34615 2.65655 3.15958 3.21149 3.31075 3.48350 3.72101 3.80487 3.84350 3.90111 3.97637 4.01514 4.16370 4.30975 4.36282 4.43466 4.47730 4.51527 4.57550 4.60641 4.64375 4.68706 4.69767 4.76420 4.81443 4.84386 4.92407 4.94380 5.01016 5.05848 5.12064 5.14579 5.28104 5.30142 5.36736 5.52987 5.65897 5.79844 6.01123 6.02853 6.40051 6.50299 7.03242 7.03751 7.16216 7.76631 8.22566 9.01621 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032139 B = 0.001891 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.007760 B =14801.182701 C =15092.886725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.615 5.615 5 C 0.118 3.882 6 C -0.111 4.111 7 H 0.150 0.850 8 C 0.528 3.472 9 O -0.574 6.574 10 N -0.708 5.708 11 C 0.167 3.833 12 C -0.131 4.131 13 C -0.141 4.141 14 C 0.181 3.819 15 N -0.621 5.621 16 C -0.353 4.353 17 H 0.052 0.948 18 C -0.075 4.075 19 N -0.944 5.944 20 Si 1.111 2.889 21 H -0.292 1.292 22 H -0.282 1.282 23 H -0.276 1.276 24 C 0.139 3.861 25 C -0.085 4.085 26 C -0.139 4.139 27 C 0.511 3.489 28 O -0.576 6.576 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.415 0.585 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.046 0.954 43 H 0.019 0.981 44 H 0.255 0.745 45 H 0.030 0.970 46 H 0.053 0.947 47 H 0.093 0.907 48 H 0.061 0.939 49 H 0.131 0.869 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.949 -2.582 0.174 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.000 4.000 4 N -0.348 5.348 5 C -0.005 4.005 6 C -0.132 4.132 7 H 0.167 0.833 8 C 0.315 3.685 9 O -0.453 6.453 10 N -0.359 5.359 11 C 0.044 3.956 12 C -0.132 4.132 13 C -0.161 4.161 14 C 0.056 3.944 15 N -0.346 5.346 16 C -0.483 4.483 17 H 0.070 0.930 18 C -0.271 4.271 19 N -0.586 5.586 20 Si 0.936 3.064 21 H -0.218 1.218 22 H -0.209 1.209 23 H -0.202 1.202 24 C 0.014 3.986 25 C -0.124 4.124 26 C -0.179 4.179 27 C 0.300 3.700 28 O -0.456 6.456 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.251 0.749 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.139 0.861 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.111 0.889 48 H 0.079 0.921 49 H 0.149 0.851 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.068 -2.833 1.080 26.244 hybrid contribution -0.815 -0.029 -1.280 1.517 sum -26.883 -2.862 -0.200 27.036 Atomic orbital electron populations 1.21671 0.93540 1.02498 1.02643 1.21876 0.97532 0.96771 1.01612 1.21625 0.76876 0.97411 1.04095 1.48499 1.07036 1.72107 1.07133 1.22072 0.87867 1.03914 0.86650 1.22216 0.93160 1.03713 0.94128 0.83251 1.20422 0.83506 0.81531 0.83073 1.90724 1.82569 1.38592 1.33435 1.45986 1.04917 1.46321 1.38707 1.20229 0.83379 0.96716 0.95259 1.20634 0.95605 0.98014 0.98923 1.22655 0.96289 0.97738 0.99437 1.19567 0.91492 0.91640 0.91728 1.44432 1.06575 1.56334 1.27295 1.20190 0.85202 1.03606 1.39258 0.93002 1.27074 1.04623 0.94365 1.01087 1.70913 1.30205 1.10453 1.47061 0.82894 0.72574 0.74391 0.76514 1.21802 1.20880 1.20208 1.21141 0.91107 0.96074 0.90273 1.20692 0.98134 0.98080 0.95478 1.22355 0.93945 1.06203 0.95446 1.21216 0.90190 0.74466 0.84118 1.90714 1.79468 1.52604 1.22832 0.91018 0.92574 0.92187 0.94037 0.91446 0.87452 0.90915 0.90352 0.87237 0.74893 0.91153 0.91424 0.86133 0.93549 0.96359 0.93439 0.95173 0.92869 0.88882 0.92084 0.85066 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.99 0.71 -0.66 16 2 C -0.14 -1.83 6.26 30.60 0.19 -1.63 16 3 C 0.12 1.52 5.93 86.38 0.51 2.03 16 4 N -0.62 -9.25 2.93 -817.85 -2.40 -11.65 16 5 C 0.12 1.41 6.69 86.82 0.58 1.99 16 6 C -0.11 -1.22 3.54 -10.49 -0.04 -1.26 16 7 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 8 C 0.53 9.29 7.06 87.66 0.62 9.90 16 9 O -0.57 -14.57 15.53 -3.06 -0.05 -14.62 16 10 N -0.71 -12.19 5.54 -466.78 -2.58 -14.77 16 11 C 0.17 3.81 5.66 85.63 0.48 4.30 16 12 C -0.13 -3.73 5.22 -15.14 -0.08 -3.81 16 13 C -0.14 -4.71 9.46 26.98 0.26 -4.45 16 14 C 0.18 8.14 4.87 85.29 0.42 8.56 16 15 N -0.62 -30.08 2.89 -704.12 -2.03 -32.12 16 16 C -0.35 -19.45 9.58 84.03 0.81 -18.64 16 17 H 0.05 2.86 7.95 -2.91 -0.02 2.84 16 18 C -0.08 -4.22 4.73 84.86 0.40 -3.81 16 19 N -0.94 -56.48 12.55 21.65 0.27 -56.20 16 20 Si 1.11 50.39 29.99 68.60 2.06 52.45 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 24 C 0.14 5.33 6.58 86.26 0.57 5.90 16 25 C -0.09 -2.53 5.95 29.65 0.18 -2.36 16 26 C -0.14 -1.80 6.40 30.58 0.20 -1.60 16 27 C 0.51 10.08 8.02 87.90 0.71 10.78 16 28 O -0.58 -16.46 17.60 -3.03 -0.05 -16.51 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 1.09 7.93 -2.39 -0.02 1.07 16 36 H 0.08 1.22 7.01 -2.39 -0.02 1.21 16 37 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.41 5.61 8.46 -92.71 -0.78 4.82 16 39 H 0.07 1.66 8.11 -2.39 -0.02 1.64 16 40 H 0.07 1.62 7.78 -2.39 -0.02 1.60 16 41 H 0.12 3.47 7.73 -2.91 -0.02 3.44 16 42 H 0.05 2.41 6.78 -2.39 -0.02 2.39 16 43 H 0.02 0.88 7.40 -2.39 -0.02 0.86 16 44 H 0.26 15.44 6.38 -92.71 -0.59 14.84 16 45 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 46 H 0.05 2.07 7.96 -2.39 -0.02 2.05 16 47 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.11 1.48 7.89 -2.39 -0.02 1.46 16 Total: -1.00 -75.39 403.30 2.04 -73.35 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.32 Total: 14.85 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 6.51 Total: 5.23 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -6.74 Total: -114.74 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.10 Total: -31.13 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.06 Total: 52.45 kcal Total: -75.39 2.04 -73.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001213215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.012 kcal (2) G-P(sol) polarization free energy of solvation -75.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds