Wall clock time and date at job start Tue Mar 31 2020 19:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.46988 * 2 1 4 4 N 1.46497 * 109.47057 * 179.97438 * 3 2 1 5 5 C 1.46759 * 124.35236 * 89.99967 * 4 3 2 6 6 C 1.54482 * 105.47714 * 163.00549 * 5 4 3 7 7 H 1.08998 * 110.96628 * 267.26074 * 6 5 4 8 8 C 1.50705 * 110.97003 * 143.53619 * 6 5 4 9 9 O 1.21282 * 119.99883 * 3.08735 * 8 6 5 10 10 N 1.34777 * 119.99763 * 183.09105 * 8 6 5 11 11 C 1.46496 * 119.99637 * 179.97438 * 10 8 6 12 12 C 1.50706 * 109.46975 * 179.97438 * 11 10 8 13 13 C 1.29453 * 117.68906 * 94.99908 * 12 11 10 14 14 C 1.50324 * 123.64641 * 180.83716 * 13 12 11 15 15 N 1.47002 * 109.16764 * 349.02198 * 14 13 12 16 16 C 1.36940 * 121.37656 * 222.95328 * 15 14 13 17 17 H 1.07996 * 120.00056 * 155.50995 * 16 15 14 18 18 C 1.38813 * 119.99753 * 335.50424 * 16 15 14 19 19 N 1.31620 * 120.00252 * 334.34526 * 18 16 15 20 20 Si 1.86800 * 119.99559 * 154.33834 * 18 16 15 21 21 H 1.48501 * 109.47162 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47518 * 300.00115 * 20 18 16 23 23 H 1.48505 * 109.47270 * 60.00628 * 20 18 16 24 24 C 1.47338 * 117.25142 * 43.22041 * 15 14 13 25 25 C 1.49963 * 117.69479 * 274.97827 * 12 11 10 26 26 C 1.54626 * 101.79725 * 25.39948 * 6 5 4 27 27 C 1.34419 * 124.35097 * 270.02279 * 4 3 2 28 28 O 1.21286 * 124.94173 * 0.39586 * 27 4 3 29 29 H 1.08997 * 109.47249 * 59.99842 * 1 2 3 30 30 H 1.09005 * 109.46739 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47055 * 299.99666 * 1 2 3 32 32 H 1.08998 * 109.47014 * 239.99784 * 2 1 3 33 33 H 1.08995 * 109.46744 * 120.00062 * 2 1 3 34 34 H 1.08998 * 109.47420 * 60.00032 * 3 2 1 35 35 H 1.08997 * 109.47255 * 300.00154 * 3 2 1 36 36 H 1.09007 * 110.24717 * 44.00268 * 5 4 3 37 37 H 1.09000 * 110.32471 * 282.04667 * 5 4 3 38 38 H 0.96995 * 119.99991 * 359.97438 * 10 8 6 39 39 H 1.09007 * 109.47586 * 59.99931 * 11 10 8 40 40 H 1.08994 * 109.47260 * 299.99751 * 11 10 8 41 41 H 1.07997 * 118.18139 * 0.81724 * 13 12 11 42 42 H 1.09013 * 109.51857 * 229.11895 * 14 13 12 43 43 H 1.08995 * 109.57598 * 108.96652 * 14 13 12 44 44 H 0.96998 * 119.99997 * 354.13743 * 19 18 16 45 45 H 1.08998 * 109.77719 * 57.53469 * 24 15 14 46 46 H 1.08998 * 109.78451 * 178.34965 * 24 15 14 47 47 H 1.08997 * 109.31840 * 281.31060 * 25 12 11 48 48 H 1.09001 * 109.31488 * 40.73943 * 25 12 11 49 49 H 1.08999 * 110.48930 * 93.89880 * 26 6 5 50 50 H 1.09003 * 110.48178 * 216.54671 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3336 1.4423 -1.2107 6 6 5.7415 1.8775 -0.7470 7 1 5.8679 2.9558 -0.8436 8 6 6.8122 1.1412 -1.5103 9 8 6.5053 0.3730 -2.3972 10 7 8.1109 1.3364 -1.2073 11 6 9.1517 0.6203 -1.9488 12 6 10.5067 1.0138 -1.4194 13 6 11.0432 0.2563 -0.5171 14 6 12.3788 0.5321 0.1153 15 7 13.0539 1.6039 -0.6306 16 6 14.3868 1.5299 -0.9357 17 1 14.7788 2.0778 -1.7798 18 6 15.2341 0.7507 -0.1599 19 7 14.9316 0.4999 1.0963 20 14 16.8037 0.0580 -0.8988 21 1 17.5270 -0.7338 0.1284 22 1 16.4648 -0.8173 -2.0497 23 1 17.6669 1.1737 -1.3627 24 6 12.2386 2.7639 -1.0313 25 6 11.1387 2.2550 -1.9754 26 6 5.7302 1.4526 0.7396 27 6 4.2630 1.4422 1.1107 28 8 3.8337 1.4350 2.2450 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9394 2.1526 -1.9375 37 1 4.3713 0.4426 -1.6434 38 1 8.3564 1.9511 -0.4982 39 1 9.0866 0.8771 -3.0062 40 1 9.0114 -0.4536 -1.8265 41 1 10.5010 -0.6225 -0.2008 42 1 12.9885 -0.3711 0.0872 43 1 12.2357 0.8428 1.1502 44 1 14.1627 0.9277 1.5047 45 1 11.7891 3.2209 -0.1497 46 1 12.8630 3.4929 -1.5478 47 1 11.5719 2.0332 -2.9507 48 1 10.3777 3.0271 -2.0892 49 1 6.1599 0.4575 0.8553 50 1 6.2729 2.1766 1.3474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001213216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:34 Heat of formation + Delta-G solvation = -41.932524 kcal Electronic energy + Delta-G solvation = -28669.368522 eV Core-core repulsion = 24696.929551 eV Total energy + Delta-G solvation = -3972.438970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.17674 -39.58664 -38.03411 -36.71395 -35.29032 -35.15295 -33.22076 -31.93315 -30.90475 -29.79699 -28.15223 -27.32759 -26.41575 -24.46630 -23.11856 -22.88164 -22.18448 -21.19410 -20.48265 -19.75907 -18.11997 -17.91341 -17.20595 -16.60880 -16.17043 -16.10850 -15.57075 -15.42778 -14.99896 -14.72634 -14.24402 -14.20506 -14.05633 -13.93307 -13.78495 -13.60417 -13.44160 -13.24922 -13.08406 -12.58426 -12.54084 -12.25431 -12.20943 -12.00832 -11.83637 -11.75735 -11.69538 -11.54429 -11.13878 -10.90366 -10.72590 -10.55368 -10.39218 -10.07800 -10.04553 -9.96235 -9.46087 -9.20513 -9.08918 -8.59450 -8.27869 -7.00303 -6.12778 -3.26358 2.22104 2.29565 2.34300 2.58746 3.24131 3.47191 3.51139 3.68763 3.82758 3.94741 4.37720 4.43611 4.53003 4.54998 4.56608 4.76640 4.82572 4.93957 4.97975 5.05246 5.15753 5.16180 5.17976 5.20307 5.32377 5.34415 5.47624 5.49936 5.60247 5.62177 5.67314 5.75502 5.81273 5.87760 5.96112 6.12642 6.14733 6.19718 6.30314 6.54534 6.58833 6.70341 6.79629 6.80238 7.04263 7.32775 7.42584 7.79952 7.89837 7.97161 8.49624 9.02119 9.77513 10.22405 11.16670 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.001927 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.068646 B =14530.003592 C =14852.781261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.620 5.620 5 C 0.118 3.882 6 C -0.125 4.125 7 H 0.119 0.881 8 C 0.523 3.477 9 O -0.539 6.539 10 N -0.715 5.715 11 C 0.156 3.844 12 C -0.158 4.158 13 C -0.122 4.122 14 C 0.172 3.828 15 N -0.600 5.600 16 C -0.347 4.347 17 H 0.059 0.941 18 C -0.024 4.024 19 N -0.917 5.917 20 Si 1.063 2.937 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.145 3.855 25 C -0.091 4.091 26 C -0.146 4.146 27 C 0.521 3.479 28 O -0.528 6.528 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.404 0.596 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.036 0.964 44 H 0.268 0.732 45 H 0.022 0.978 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.110 0.890 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.972 3.354 -4.504 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.354 5.354 5 C -0.005 4.005 6 C -0.147 4.147 7 H 0.137 0.863 8 C 0.308 3.692 9 O -0.416 6.416 10 N -0.366 5.366 11 C 0.034 3.966 12 C -0.159 4.159 13 C -0.143 4.143 14 C 0.047 3.953 15 N -0.324 5.324 16 C -0.476 4.476 17 H 0.077 0.923 18 C -0.226 4.226 19 N -0.557 5.557 20 Si 0.893 3.107 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.019 3.981 25 C -0.130 4.130 26 C -0.186 4.186 27 C 0.308 3.692 28 O -0.404 6.404 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.238 0.762 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.040 0.960 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.073 0.927 49 H 0.128 0.872 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -24.129 1.815 -4.270 24.571 hybrid contribution -1.171 1.267 -0.142 1.732 sum -25.300 3.082 -4.413 25.866 Atomic orbital electron populations 1.21691 0.94871 1.02173 1.01958 1.21929 0.96371 0.97026 1.02891 1.21466 0.77487 0.97291 1.03259 1.48343 1.06385 1.73484 1.07204 1.21976 0.87755 1.03901 0.86903 1.22253 0.94565 1.02498 0.95336 0.86268 1.20044 0.83367 0.82248 0.83574 1.90721 1.82128 1.37018 1.31776 1.46154 1.05309 1.46418 1.38706 1.20492 0.84412 0.96006 0.95696 1.20529 0.95005 0.99740 1.00622 1.23030 0.98511 0.97163 0.95581 1.19918 0.88820 0.93563 0.93020 1.44196 1.06249 1.15518 1.66471 1.19950 0.83602 1.33246 1.10809 0.92322 1.25825 1.02360 1.00119 0.94315 1.70813 1.28957 1.45952 1.10020 0.83546 0.75476 0.76520 0.75163 1.21068 1.22062 1.21959 1.21059 0.91833 0.90206 0.95019 1.20847 0.97961 0.94064 1.00143 1.22378 0.95644 1.05679 0.94926 1.20769 0.88883 0.75122 0.84425 1.90745 1.78464 1.50191 1.21043 0.92520 0.92302 0.92456 0.91529 0.91505 0.89899 0.90192 0.89681 0.88996 0.76192 0.91232 0.91375 0.88430 0.89684 0.94622 0.92102 0.96046 0.92215 0.91493 0.92712 0.87157 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.14 -1.01 6.26 -26.73 -0.17 -1.18 16 3 C 0.13 0.90 5.93 -4.05 -0.02 0.87 16 4 N -0.62 -5.27 2.93 -172.39 -0.51 -5.78 16 5 C 0.12 0.87 6.69 -3.12 -0.02 0.85 16 6 C -0.12 -0.91 3.54 -90.14 -0.32 -1.23 16 7 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 8 C 0.52 5.44 7.06 -10.98 -0.08 5.36 16 9 O -0.54 -7.52 15.53 5.56 0.09 -7.44 16 10 N -0.72 -7.43 5.54 -61.47 -0.34 -7.77 16 11 C 0.16 2.02 5.66 -5.19 -0.03 2.00 16 12 C -0.16 -2.44 5.22 -100.99 -0.53 -2.97 16 13 C -0.12 -2.13 9.47 -35.78 -0.34 -2.46 16 14 C 0.17 3.81 4.89 -5.10 -0.02 3.78 16 15 N -0.60 -14.38 2.88 -173.35 -0.50 -14.88 16 16 C -0.35 -9.42 9.58 -15.06 -0.14 -9.57 16 17 H 0.06 1.60 7.95 -52.49 -0.42 1.18 16 18 C -0.02 -0.67 4.73 -17.43 -0.08 -0.76 16 19 N -0.92 -26.72 12.54 55.49 0.70 -26.02 16 20 Si 1.06 24.74 29.99 -169.99 -5.10 19.64 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.15 2.84 6.61 -3.26 -0.02 2.82 16 25 C -0.09 -1.46 5.96 -27.91 -0.17 -1.62 16 26 C -0.15 -1.16 6.40 -26.71 -0.17 -1.34 16 27 C 0.52 5.54 8.02 -10.83 -0.09 5.46 16 28 O -0.53 -7.67 17.59 5.55 0.10 -7.57 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.09 0.82 7.00 -51.93 -0.36 0.46 16 38 H 0.40 3.55 8.46 -40.82 -0.35 3.21 16 39 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 40 H 0.07 0.93 7.78 -51.93 -0.40 0.52 16 41 H 0.10 1.51 7.73 -52.49 -0.41 1.10 16 42 H 0.09 2.13 6.77 -51.92 -0.35 1.78 16 43 H 0.04 0.82 7.40 -51.93 -0.38 0.43 16 44 H 0.27 7.79 6.38 -40.82 -0.26 7.53 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.11 0.93 7.89 -51.93 -0.41 0.52 16 50 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -33.47 403.35 -9.77 -43.25 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.46 Total: 0.91 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.83 Total: -0.43 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.65 Total: -54.44 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.18 Total: -15.01 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.10 Total: 19.64 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.47 -9.77 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001213216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.315 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds