Wall clock time and date at job start Tue Mar 31 2020 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 H 1.09007 * 109.47294 * 305.00161 * 3 2 1 5 5 C 1.53001 * 109.47144 * 64.99950 * 3 2 1 6 6 C 1.50701 * 109.47313 * 185.00267 * 3 2 1 7 7 C 1.41261 * 126.70486 * 275.00061 * 6 3 2 8 8 C 1.36827 * 103.84455 * 179.97438 * 7 6 3 9 9 C 1.47510 * 126.94194 * 179.97438 * 8 7 6 10 10 O 1.21589 * 119.99924 * 6.45654 * 9 8 7 11 11 N 1.34771 * 120.00394 * 186.45221 * 9 8 7 12 12 C 1.46504 * 119.99303 * 5.27862 * 11 9 8 13 13 C 1.46498 * 120.00634 * 185.27566 * 11 9 8 14 14 C 1.53039 * 109.46270 * 240.03177 * 13 11 9 15 15 C 1.53192 * 109.31363 * 178.60166 * 14 13 11 16 16 N 1.46918 * 108.76623 * 54.65223 * 15 14 13 17 17 C 1.36942 * 120.63178 * 126.40818 * 16 15 14 18 18 H 1.07999 * 119.99530 * 327.89646 * 17 16 15 19 19 C 1.38814 * 119.99889 * 147.89495 * 17 16 15 20 20 N 1.31620 * 119.99864 * 344.72295 * 19 17 16 21 21 Si 1.86798 * 119.99703 * 164.72528 * 19 17 16 22 22 H 1.48499 * 109.47154 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47170 * 119.99803 * 21 19 17 24 24 H 1.48504 * 109.46999 * 239.99842 * 21 19 17 25 25 C 1.46929 * 118.73946 * 306.38614 * 16 15 14 26 26 C 1.53039 * 109.46094 * 119.97088 * 13 11 9 27 27 O 1.34636 * 106.11287 * 0.26392 * 8 7 6 28 28 N 1.20889 * 111.46938 * 359.52619 * 27 8 7 29 29 H 1.08996 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46577 * 299.99830 * 1 2 3 31 31 H 1.09003 * 109.47252 * 59.99488 * 1 2 3 32 32 H 1.09001 * 109.46577 * 240.00170 * 2 1 3 33 33 H 1.09003 * 109.47252 * 120.00512 * 2 1 3 34 34 H 1.09000 * 109.47280 * 300.00547 * 5 3 2 35 35 H 1.08998 * 109.46655 * 60.00498 * 5 3 2 36 36 H 1.08996 * 109.46869 * 180.02562 * 5 3 2 37 37 H 1.07999 * 128.07563 * 0.02562 * 7 6 3 38 38 H 1.09007 * 109.47179 * 275.74857 * 12 11 9 39 39 H 1.08998 * 109.47861 * 35.75326 * 12 11 9 40 40 H 1.09003 * 109.46994 * 155.75744 * 12 11 9 41 41 H 1.08998 * 109.45507 * 0.02562 * 13 11 9 42 42 H 1.09003 * 109.49349 * 298.56454 * 14 13 11 43 43 H 1.09001 * 109.49754 * 58.65486 * 14 13 11 44 44 H 1.09005 * 109.59506 * 294.86439 * 15 14 13 45 45 H 1.08998 * 109.70202 * 174.50894 * 15 14 13 46 46 H 0.97006 * 119.99111 * 180.02562 * 20 19 17 47 47 H 1.09006 * 109.58705 * 293.82234 * 25 16 15 48 48 H 1.08997 * 109.70497 * 173.46679 * 25 16 15 49 49 H 1.09000 * 109.49824 * 301.34443 * 26 13 11 50 50 H 1.09008 * 109.49481 * 61.43919 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5420 1.4442 -0.1239 7 6 4.4760 1.3137 0.9277 8 6 5.6891 1.3764 0.2978 9 6 7.0204 1.2920 0.9275 10 8 7.1175 1.0347 2.1119 11 7 8.1291 1.5000 0.1900 12 6 8.0104 1.9230 -1.2076 13 6 9.4529 1.3033 0.7859 14 6 10.2377 2.6159 0.7293 15 6 11.6079 2.4156 1.3845 16 7 12.2808 1.2820 0.7358 17 6 13.5405 1.4222 0.2174 18 1 13.8522 2.3703 -0.1952 19 6 14.4168 0.3455 0.2222 20 7 14.1666 -0.7032 0.9772 21 14 15.9509 0.3852 -0.8428 22 1 16.0011 1.6670 -1.5910 23 1 17.1548 0.2682 0.0187 24 1 15.9168 -0.7476 -1.8024 25 6 11.5767 -0.0050 0.6543 26 6 10.2068 0.2225 0.0076 27 8 5.4221 1.5370 -1.0120 28 7 4.2317 1.5658 -1.2206 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5490 2.1252 1.3970 35 1 2.0700 1.5875 2.1491 36 1 1.9983 3.1542 1.3071 37 1 4.2787 1.1921 1.9826 38 1 7.8656 1.0478 -1.8411 39 1 7.1572 2.5931 -1.3133 40 1 8.9201 2.4427 -1.5084 41 1 9.3409 0.9912 1.8242 42 1 10.3716 2.9152 -0.3102 43 1 9.6888 3.3913 1.2638 44 1 11.4782 2.2047 2.4461 45 1 12.2091 3.3164 1.2617 46 1 14.7792 -1.4553 0.9807 47 1 11.4444 -0.4133 1.6563 48 1 12.1552 -0.7027 0.0489 49 1 9.6359 -0.7058 0.0284 50 1 10.3410 0.5446 -1.0251 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006102681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:52 Heat of formation + Delta-G solvation = 38.120363 kcal Electronic energy + Delta-G solvation = -29453.966278 eV Core-core repulsion = 25484.998661 eV Total energy + Delta-G solvation = -3968.967617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.21261 -40.00294 -37.58080 -37.45501 -35.28263 -33.46981 -32.80593 -31.83799 -30.21138 -29.88991 -29.61780 -27.02282 -25.75112 -25.51570 -23.86264 -23.24818 -22.23104 -21.81520 -21.02019 -19.52160 -18.99186 -17.98766 -17.69301 -16.83487 -16.50574 -16.17732 -15.41052 -15.26305 -14.94687 -14.76212 -14.17734 -14.14520 -13.83371 -13.70640 -13.55047 -13.16678 -13.12887 -13.04407 -12.61300 -12.58175 -12.45618 -12.28665 -12.12886 -11.85078 -11.59028 -11.50786 -11.39690 -11.17568 -11.06570 -10.87552 -10.76572 -10.45668 -10.29646 -10.22960 -10.18083 -10.11468 -9.88037 -9.79536 -9.58296 -8.60155 -8.42703 -6.65929 -5.82067 -3.28752 0.66779 1.81638 2.47021 2.92296 3.08990 3.35365 3.43434 3.45358 3.65650 4.10712 4.45523 4.46992 4.52362 4.67106 4.73530 4.86330 5.02755 5.06664 5.10226 5.16076 5.24716 5.28708 5.36817 5.39913 5.45102 5.47601 5.52767 5.55375 5.60244 5.61090 5.71922 5.75984 5.83060 5.86936 5.90627 6.02007 6.15744 6.25477 6.43533 6.49299 6.57231 6.74193 6.77212 6.92206 7.26284 7.31329 7.59069 7.78631 7.80278 8.00566 8.44467 9.18520 9.80406 10.39562 11.26734 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031915 B = 0.002134 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.106806 B =13118.834266 C =13201.812548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.012 4.012 4 H 0.089 0.911 5 C -0.148 4.148 6 C 0.018 3.982 7 C -0.154 4.154 8 C -0.072 4.072 9 C 0.596 3.404 10 O -0.516 6.516 11 N -0.591 5.591 12 C 0.071 3.929 13 C 0.145 3.855 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.591 5.591 17 C -0.256 4.256 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.177 3.823 26 C -0.146 4.146 27 O 0.118 5.882 28 N -0.351 5.351 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.181 0.819 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.021 0.979 45 H 0.059 0.941 46 H 0.254 0.746 47 H 0.022 0.978 48 H 0.085 0.915 49 H 0.052 0.948 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.189 4.385 -2.627 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.108 0.892 5 C -0.206 4.206 6 C -0.140 4.140 7 C -0.176 4.176 8 C -0.138 4.138 9 C 0.381 3.619 10 O -0.392 6.392 11 N -0.322 5.322 12 C -0.071 4.071 13 C 0.044 3.956 14 C -0.179 4.179 15 C 0.021 3.979 16 N -0.314 5.314 17 C -0.386 4.386 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.544 5.544 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.050 3.950 26 C -0.186 4.186 27 O 0.047 5.953 28 N -0.052 5.052 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.198 0.802 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.103 0.897 49 H 0.071 0.929 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.311 4.261 -3.268 25.874 hybrid contribution 0.801 -0.189 0.117 0.831 sum -24.510 4.071 -3.150 25.045 Atomic orbital electron populations 1.21816 0.94976 1.02053 1.02116 1.21572 0.96326 0.94759 1.02849 1.19606 0.85366 0.97928 1.00259 0.89242 1.21903 1.02032 1.00674 0.95957 1.23581 0.98781 1.03214 0.88383 1.22782 0.89484 1.03274 1.02078 1.24374 0.97436 1.07744 0.84245 1.16688 0.81130 0.78398 0.85698 1.90864 1.85069 1.49410 1.13874 1.48130 1.06332 1.65161 1.12582 1.21946 1.03333 1.00584 0.81286 1.21353 0.78562 0.96847 0.98832 1.22401 0.98238 0.95505 1.01764 1.20875 0.90487 0.92319 0.94243 1.44048 1.14624 1.06815 1.65903 1.19170 0.88867 0.98181 1.32371 0.91765 1.25174 0.97530 0.98213 0.98412 1.70032 1.37804 1.07848 1.38669 0.86240 0.82975 0.77573 0.80055 1.20192 1.21666 1.21535 1.20695 0.87651 0.88761 0.97879 1.22594 0.99306 0.96557 1.00160 1.85136 1.19060 1.66184 1.24961 1.73705 0.89679 1.17519 1.24282 0.92379 0.92161 0.92569 0.91672 0.91278 0.91181 0.91829 0.92166 0.80198 0.91858 0.91132 0.89511 0.88342 0.91832 0.92724 0.96114 0.92298 0.93597 0.95941 0.89671 0.92926 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.67 37.16 0.36 -0.43 16 2 C -0.12 -0.80 5.38 -26.73 -0.14 -0.95 16 3 C -0.01 -0.09 2.85 -91.77 -0.26 -0.36 16 4 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 5 C -0.15 -0.89 8.56 37.16 0.32 -0.57 16 6 C 0.02 0.19 6.20 -82.16 -0.51 -0.32 16 7 C -0.15 -1.72 10.13 -38.94 -0.39 -2.11 16 8 C -0.07 -0.93 6.82 -36.31 -0.25 -1.18 16 9 C 0.60 9.07 7.66 -12.48 -0.10 8.98 16 10 O -0.52 -9.31 16.26 5.29 0.09 -9.22 16 11 N -0.59 -8.67 2.76 -175.12 -0.48 -9.15 16 12 C 0.07 0.84 8.40 59.85 0.50 1.34 16 13 C 0.15 2.48 2.47 -67.89 -0.17 2.31 16 14 C -0.14 -2.35 5.32 -26.61 -0.14 -2.49 16 15 C 0.15 3.03 6.52 -3.71 -0.02 3.00 16 16 N -0.59 -14.39 2.97 -172.32 -0.51 -14.90 16 17 C -0.26 -6.86 9.55 -15.06 -0.14 -7.00 16 18 H 0.06 1.69 7.87 -52.49 -0.41 1.28 16 19 C 0.01 0.16 4.93 -17.43 -0.09 0.08 16 20 N -0.90 -25.82 11.39 55.49 0.63 -25.19 16 21 Si 0.90 21.31 29.58 -169.99 -5.03 16.29 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.18 4.10 5.26 -3.71 -0.02 4.08 16 26 C -0.15 -2.70 5.34 -26.61 -0.14 -2.84 16 27 O 0.12 1.47 8.26 15.57 0.13 1.59 16 28 N -0.35 -4.30 12.04 33.52 0.40 -3.89 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.32 6.56 -51.93 -0.34 -0.02 16 35 H 0.06 0.37 7.48 -51.93 -0.39 -0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.18 1.73 7.65 -52.49 -0.40 1.32 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.74 6.04 -51.93 -0.31 0.43 16 40 H 0.09 1.00 6.47 -51.93 -0.34 0.66 16 41 H 0.10 1.88 6.91 -51.93 -0.36 1.52 16 42 H 0.06 1.04 6.72 -51.93 -0.35 0.69 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.09 2.21 6.33 -51.93 -0.33 1.88 16 49 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.06 1.10 7.72 -51.92 -0.40 0.70 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -30.48 391.81 -8.24 -38.72 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -8.17 Total: -1.71 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.20 Total: 1.56 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.04 Total: -53.13 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.21 Total: -7.63 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.48 -8.24 -38.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006102681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.838 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds