Wall clock time and date at job start Tue Mar 31 2020 18:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 H 1.09007 * 109.47294 * 305.00161 * 3 2 1 5 5 C 1.53001 * 109.47144 * 64.99950 * 3 2 1 6 6 C 1.50701 * 109.47313 * 185.00267 * 3 2 1 7 7 C 1.41261 * 126.70486 * 275.00061 * 6 3 2 8 8 C 1.36827 * 103.84455 * 179.97438 * 7 6 3 9 9 C 1.47510 * 126.94194 * 179.97438 * 8 7 6 10 10 O 1.21589 * 119.99924 * 6.45654 * 9 8 7 11 11 N 1.34771 * 120.00394 * 186.45221 * 9 8 7 12 12 C 1.46504 * 119.99303 * 5.27862 * 11 9 8 13 13 C 1.46498 * 120.00634 * 185.27566 * 11 9 8 14 14 C 1.53039 * 109.46270 * 240.03177 * 13 11 9 15 15 C 1.53192 * 109.31363 * 178.60166 * 14 13 11 16 16 N 1.46918 * 108.76623 * 54.65223 * 15 14 13 17 17 C 1.36942 * 120.63178 * 126.40818 * 16 15 14 18 18 H 1.07999 * 119.99530 * 327.89646 * 17 16 15 19 19 C 1.38814 * 119.99889 * 147.89495 * 17 16 15 20 20 N 1.31620 * 119.99864 * 344.72295 * 19 17 16 21 21 Si 1.86798 * 119.99703 * 164.72528 * 19 17 16 22 22 H 1.48499 * 109.47154 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47170 * 119.99803 * 21 19 17 24 24 H 1.48504 * 109.46999 * 239.99842 * 21 19 17 25 25 C 1.46929 * 118.73946 * 306.38614 * 16 15 14 26 26 C 1.53039 * 109.46094 * 119.97088 * 13 11 9 27 27 O 1.34636 * 106.11287 * 0.26392 * 8 7 6 28 28 N 1.20889 * 111.46938 * 359.52619 * 27 8 7 29 29 H 1.08996 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46577 * 299.99830 * 1 2 3 31 31 H 1.09003 * 109.47252 * 59.99488 * 1 2 3 32 32 H 1.09001 * 109.46577 * 240.00170 * 2 1 3 33 33 H 1.09003 * 109.47252 * 120.00512 * 2 1 3 34 34 H 1.09000 * 109.47280 * 300.00547 * 5 3 2 35 35 H 1.08998 * 109.46655 * 60.00498 * 5 3 2 36 36 H 1.08996 * 109.46869 * 180.02562 * 5 3 2 37 37 H 1.07999 * 128.07563 * 0.02562 * 7 6 3 38 38 H 1.09007 * 109.47179 * 275.74857 * 12 11 9 39 39 H 1.08998 * 109.47861 * 35.75326 * 12 11 9 40 40 H 1.09003 * 109.46994 * 155.75744 * 12 11 9 41 41 H 1.08998 * 109.45507 * 0.02562 * 13 11 9 42 42 H 1.09003 * 109.49349 * 298.56454 * 14 13 11 43 43 H 1.09001 * 109.49754 * 58.65486 * 14 13 11 44 44 H 1.09005 * 109.59506 * 294.86439 * 15 14 13 45 45 H 1.08998 * 109.70202 * 174.50894 * 15 14 13 46 46 H 0.97006 * 119.99111 * 180.02562 * 20 19 17 47 47 H 1.09006 * 109.58705 * 293.82234 * 25 16 15 48 48 H 1.08997 * 109.70497 * 173.46679 * 25 16 15 49 49 H 1.09000 * 109.49824 * 301.34443 * 26 13 11 50 50 H 1.09008 * 109.49481 * 61.43919 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5420 1.4442 -0.1239 7 6 4.4760 1.3137 0.9277 8 6 5.6891 1.3764 0.2978 9 6 7.0204 1.2920 0.9275 10 8 7.1175 1.0347 2.1119 11 7 8.1291 1.5000 0.1900 12 6 8.0104 1.9230 -1.2076 13 6 9.4529 1.3033 0.7859 14 6 10.2377 2.6159 0.7293 15 6 11.6079 2.4156 1.3845 16 7 12.2808 1.2820 0.7358 17 6 13.5405 1.4222 0.2174 18 1 13.8522 2.3703 -0.1952 19 6 14.4168 0.3455 0.2222 20 7 14.1666 -0.7032 0.9772 21 14 15.9509 0.3852 -0.8428 22 1 16.0011 1.6670 -1.5910 23 1 17.1548 0.2682 0.0187 24 1 15.9168 -0.7476 -1.8024 25 6 11.5767 -0.0050 0.6543 26 6 10.2068 0.2225 0.0076 27 8 5.4221 1.5370 -1.0120 28 7 4.2317 1.5658 -1.2206 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5490 2.1252 1.3970 35 1 2.0700 1.5875 2.1491 36 1 1.9983 3.1542 1.3071 37 1 4.2787 1.1921 1.9826 38 1 7.8656 1.0478 -1.8411 39 1 7.1572 2.5931 -1.3133 40 1 8.9201 2.4427 -1.5084 41 1 9.3409 0.9912 1.8242 42 1 10.3716 2.9152 -0.3102 43 1 9.6888 3.3913 1.2638 44 1 11.4782 2.2047 2.4461 45 1 12.2091 3.3164 1.2617 46 1 14.7792 -1.4553 0.9807 47 1 11.4444 -0.4133 1.6563 48 1 12.1552 -0.7027 0.0489 49 1 9.6359 -0.7058 0.0284 50 1 10.3410 0.5446 -1.0251 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006102681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:50 Heat of formation + Delta-G solvation = 21.845808 kcal Electronic energy + Delta-G solvation = -29454.671995 eV Core-core repulsion = 25484.998661 eV Total energy + Delta-G solvation = -3969.673334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -46.12363 -41.27150 -39.07882 -38.13914 -36.73083 -34.45595 -34.23700 -33.07965 -31.83583 -31.31730 -30.39495 -28.11238 -27.24110 -26.28669 -25.25257 -24.06772 -23.87910 -23.18504 -21.90581 -20.68095 -20.34640 -18.95700 -18.79420 -18.58603 -17.73265 -17.24108 -16.82954 -16.37306 -15.93381 -15.90676 -15.47313 -15.37312 -14.98509 -14.87219 -14.74479 -14.57166 -14.40579 -14.13283 -13.98263 -13.68251 -13.20613 -13.17835 -13.03660 -13.00022 -12.87382 -12.66240 -12.53868 -12.49234 -12.17895 -12.13790 -11.96970 -11.95986 -11.88664 -11.59246 -11.53843 -11.45230 -11.24086 -11.08187 -10.83886 -10.57687 -9.76960 -8.65480 -7.87746 -5.37631 -0.33682 0.95632 1.38294 1.47874 1.49809 1.60214 1.79146 2.01144 2.51764 2.90223 3.20086 3.29197 3.64644 3.68094 3.86675 3.88728 3.97521 4.01434 4.05434 4.12227 4.17321 4.30908 4.42969 4.45710 4.54981 4.59244 4.61089 4.65300 4.69877 4.73915 4.83916 4.85241 4.91890 5.00502 5.02432 5.06156 5.07895 5.12687 5.13244 5.17778 5.30167 5.37558 5.40375 5.45317 5.48379 5.65325 5.68533 6.12032 6.41339 6.70142 7.00090 7.15141 7.83662 8.38624 9.19404 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031915 B = 0.002134 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.106806 B =13118.834266 C =13201.812548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.012 4.012 4 H 0.093 0.907 5 C -0.146 4.146 6 C 0.025 3.975 7 C -0.144 4.144 8 C -0.086 4.086 9 C 0.598 3.402 10 O -0.550 6.550 11 N -0.589 5.589 12 C 0.069 3.931 13 C 0.155 3.845 14 C -0.123 4.123 15 C 0.144 3.856 16 N -0.608 5.608 17 C -0.262 4.262 18 H 0.069 0.931 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.290 1.290 25 C 0.184 3.816 26 C -0.129 4.129 27 O 0.116 5.884 28 N -0.365 5.365 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.195 0.805 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.010 0.990 45 H 0.064 0.936 46 H 0.250 0.750 47 H -0.006 1.006 48 H 0.054 0.946 49 H 0.059 0.941 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.295 5.754 -3.759 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.031 4.031 4 H 0.111 0.889 5 C -0.204 4.204 6 C -0.133 4.133 7 C -0.166 4.166 8 C -0.152 4.152 9 C 0.384 3.616 10 O -0.429 6.429 11 N -0.319 5.319 12 C -0.073 4.073 13 C 0.053 3.947 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.331 5.331 17 C -0.392 4.392 18 H 0.087 0.913 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.796 3.204 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.217 1.217 25 C 0.058 3.942 26 C -0.169 4.169 27 O 0.045 5.955 28 N -0.067 5.067 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.212 0.788 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.028 0.972 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.012 0.988 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.439 5.665 -4.430 28.366 hybrid contribution 1.369 -0.598 0.503 1.577 sum -26.070 5.067 -3.926 26.846 Atomic orbital electron populations 1.21801 0.93515 1.02512 1.02827 1.21556 0.97565 0.94040 1.02164 1.19773 0.83355 0.98629 1.01384 0.88888 1.21917 1.03281 1.00235 0.94943 1.24046 1.00057 1.01660 0.87503 1.23061 0.88991 1.01622 1.02911 1.23988 0.96670 1.09617 0.84884 1.16860 0.81860 0.77545 0.85298 1.90845 1.85741 1.50951 1.15401 1.48022 1.05179 1.65017 1.13685 1.22142 1.04339 1.01364 0.79436 1.20975 0.79825 0.96397 0.97511 1.22202 0.95961 0.95810 1.02332 1.21005 0.92310 0.91142 0.93757 1.44296 1.14520 1.07842 1.66454 1.19516 0.89741 0.98240 1.31701 0.91303 1.25941 1.00582 0.98115 0.99812 1.70189 1.38938 1.08506 1.40479 0.85211 0.79167 0.77841 0.78230 1.18745 1.22151 1.21712 1.20449 0.89661 0.88004 0.96107 1.22319 0.96662 0.97689 1.00215 1.85124 1.19247 1.66629 1.24494 1.73698 0.89751 1.18227 1.25030 0.92103 0.91025 0.92276 0.93031 0.91330 0.89353 0.91600 0.92445 0.78798 0.90964 0.89647 0.88832 0.90603 0.90558 0.90687 0.97220 0.91729 0.94103 0.98796 0.92784 0.92193 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 71.98 0.70 -0.51 16 2 C -0.11 -1.36 5.38 30.59 0.16 -1.20 16 3 C -0.01 -0.16 2.85 -11.54 -0.03 -0.19 16 4 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 5 C -0.15 -1.37 8.56 71.98 0.62 -0.75 16 6 C 0.03 0.49 6.20 43.55 0.27 0.76 16 7 C -0.14 -2.97 10.13 22.68 0.23 -2.74 16 8 C -0.09 -2.10 6.82 24.39 0.17 -1.93 16 9 C 0.60 17.65 7.66 86.69 0.66 18.32 16 10 O -0.55 -19.78 16.26 -3.99 -0.06 -19.84 16 11 N -0.59 -16.44 2.76 -826.23 -2.28 -18.72 16 12 C 0.07 1.46 8.40 127.77 1.07 2.53 16 13 C 0.16 5.21 2.47 45.02 0.11 5.32 16 14 C -0.12 -3.97 5.32 30.67 0.16 -3.81 16 15 C 0.14 5.85 6.52 86.36 0.56 6.41 16 16 N -0.61 -29.93 2.97 -699.10 -2.08 -32.01 16 17 C -0.26 -14.07 9.55 84.03 0.80 -13.26 16 18 H 0.07 3.58 7.87 -2.91 -0.02 3.55 16 19 C -0.05 -2.69 4.93 84.86 0.42 -2.28 16 20 N -0.94 -55.35 11.39 21.65 0.25 -55.10 16 21 Si 0.97 44.24 29.58 68.60 2.03 46.27 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 C 0.18 8.83 5.26 86.36 0.45 9.29 16 26 C -0.13 -4.74 5.34 30.67 0.16 -4.58 16 27 O 0.12 2.68 8.26 65.89 0.54 3.22 16 28 N -0.36 -8.33 12.04 -48.86 -0.59 -8.92 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.43 6.56 -2.39 -0.02 0.41 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.52 6.56 -2.39 -0.02 0.51 16 35 H 0.06 0.60 7.48 -2.39 -0.02 0.58 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.19 3.36 7.65 -2.91 -0.02 3.34 16 38 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.09 1.59 6.04 -2.39 -0.01 1.58 16 40 H 0.09 1.88 6.47 -2.39 -0.02 1.87 16 41 H 0.08 2.94 6.91 -2.39 -0.02 2.92 16 42 H 0.08 2.30 6.72 -2.39 -0.02 2.28 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 45 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 46 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 47 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 48 H 0.05 2.91 6.33 -2.39 -0.02 2.89 16 49 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.07 2.48 7.72 -2.38 -0.02 2.46 16 Total: -1.00 -66.78 391.81 5.26 -61.52 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.93 Total: 12.22 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.52 Total: 11.37 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -4.70 Total: -114.76 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.48 Total: -16.62 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -66.78 5.26 -61.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006102681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.364 kcal (2) G-P(sol) polarization free energy of solvation -66.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds